Clone BS13215 Report

Search the DGRC for BS13215

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:15
Vector:pDNR-Dual
Associated Gene/Transcriptpon-RA
Protein status:BS13215.pep: full length peptide match
Sequenced Size:2045

Clone Sequence Records

BS13215.complete Sequence

2045 bp assembled on 2009-12-07

GenBank Submission: KX802968

> BS13215.complete
GAAGTTATCAGTCGACATGCTGGAGACGAAGAGCATAGCTGCATTGGCTT
TCACGGAGACGCCGCGCAAACGCAAAAGGGAGACGCTCTATAAAAATGCT
GCCCCGCCCCCGAATCCGCAGCAACAACCCCCAGAAAAGGACGCACAGGA
TGCAGCTGTCGCGTCGACAGAATCCTGCTTCACCAACGCCGCCTTCAGTT
CCACGCCCAAGAAGCTAATGGTGGCTCGTCGTCGTTTGGCCAAGGAGAAT
AGCCAACCCAATCCGTTTCCCGGCTTGGAGGTCAAGTCCATAGCTGATCT
GGCCCAGAAGCAGCAGCACCAGCAGCATCATCAGCAGCAGCAACAACAAC
AACAAAAGCTACCCACGAATCCTTTTGAGGTCCTGCGCCAGCCGCCCAAG
AAGAAGAAGCGCGAGCATGCCTGCTTCGAGAATCCTGGCCTGAATTTGGA
GCTGCCCGAGAAGCAGTTCAATCCATATGAGGTCGTCCGCTCGGCAACCA
CGCCCGCCAAGGGCTTCGTGAATCCTGCCCTGAATTTGCGCGGCAGTGAT
GCGCCGGCCTCGCTCAATCCCTTCGAGATCCATCGGCCCAGCGAGGCGTC
CGAGGCAGCCTGCAATCCCTCGGGTGTGGCCAATCCGGCACTGGCCGATA
GGGATTCGGAGGAGCAGCTGCCCACCAGCCTGAAGATCGGCTTGCCATTC
ACGCCAACGCTGGGCTGTCGCATCGATTTTCACGGCATGTCCCTTACGCA
GCTAACGCCTAGCAAGCTGCTGGCCGAGAAGCTGGTCTTTTCGCCCGTTC
CGGCGCCCAAACGATCGCTGGGCGCCATCAGCGAGGAGTCGTCTATGGAC
ATTGGCAAGGAGCTGGATCGCTATCAACTGGAATTGGAGAACAGCATCAA
CGAGGCGAAGCTACGGAAGAATGGCGTGCTGGTGGATAGAGAGTTGCCCA
GGAATAGCTTGGAGGTGGAACTGCCCAAGAACACCAAGGTCTCCTTGGTC
ATGGAGACCAATACGCAGGAGCTGATGATGCAGGAAGTGGTGACGGTGGA
CACTCAAGTGGAGAGGCGTCTGGTTTGCACCAGACGACGCACACTAACCG
AGATTAGCGAGGCTTCCGAGGTGGAAGAGGACACGGAGAAGCTGCTCGAG
CAGGACCGCGAAGCAGAGGTGATTCTCGAGCAGGAGAAGATTCTAGAGCA
GGAGATGGTCTCAGAGCGGGAACGACATTTAACGAGGGAGAAGCAATTGA
AGCAGGAGAAACTCCTAGAGAGGGAAAAACATTTGGAGCGAGAGAAGCTG
CAGGAGAAGCTGCACGAGCAGCTCAGGGAAAAGCTCCAGGAGAGGGCCAA
GCACCTGGAGAAGGAGAAGCTGGAGGAGGAGGAGCTCCTGGAAAGGCAGC
TAGAAGAGGAACGGGAAAAGGAGCCAACCGACGGCGATGTGGCCTATGCC
TCCGAATCCGAATCCGACGACGAGCCCGATGATCTAGACTTCAAGGCACC
CGCGCGCTTCGTTCGCGCCTACAGACCCGCCGCTCTGCCCTCCAAGGCGG
CCAGCAAGGAGTCGCTGCAGTCCATCGGATCAAGCAAGTCCGCCAAATCG
GCAGAAGTTAAGCCCAGTATCGGAATGAAAGGCATGATAAGAAAGTCCAT
TCGAAGACTGATGCATCCCACGTCGCACACCACGCCATCCGAGGTAAAGT
CCGAGGACAAGGATGAACATGGACATGGACAGGGCCATGGACAGCACAAC
ATACTCAATAGCATTCGGCACAGCCTGCGCAGGAGGCCACAAAAGGCGGC
CGAGTTGGAGGAGCAAATGGAGCCCGTTCTCGCCGACGTCTCCATTATCG
ACACCAGCGAACGGACCATGAAGCTCCGCTCGAGCGTTGCCCAAACCGAG
TACATGACCATCGAGCAGCTGACCAACGAGAAGAAGCACTCACTGCGGAA
CAGCATTAGGCGGTCCACGCGGGACGTGCTGCGCCATGTGTTCCACAAGA
GTCACGATGCCTATGCAACCGCCAAGTGAAAGCTTTCTAGACCAT

BS13215.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
pon-RA 2013 CG3346-PA 1..2013 17..2029 10050 100 Plus
Trl-RK 1872 CG33261-PK 1508..1559 309..360 185 90.4 Plus
Trl-RJ 1827 CG33261-PJ 1508..1559 309..360 185 90.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
pon-RA 2601 CG3346-RA 136..2148 17..2029 10050 100 Plus
Cht6-RK 11742 CG43374-RK 135..180 309..354 185 93.5 Plus
Cht6-RJ 14423 CG43374-RJ 79..124 309..354 185 93.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4637110..4638659 480..2029 7735 99.9 Plus
X 23542271 X 4636453..4636919 17..483 2335 100 Plus
X 23542271 X 10017616..10017661 309..354 185 93.5 Plus
3L 28110227 3L 14027758..14027809 355..304 185 90.4 Minus
3L 28110227 3L 14751472..14751523 360..309 185 90.4 Minus
Blast to na_te.dros performed 2014-11-28 01:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2364..2436 288..359 209 78.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2409 305..359 185 81.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2783..2835 310..362 184 83 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2355 306..359 162 77.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3279..3323 311..355 144 80 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2434..2476 312..354 143 81.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2943..2997 311..362 133 74.5 Plus

BS13215.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:45 Download gff for BS13215.complete
Subject Subject Range Query Range Percent Splice Strand
pon-RA 124..2135 17..2028 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:30 Download gff for BS13215.complete
Subject Subject Range Query Range Percent Splice Strand
pon-RA 136..2147 17..2028 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:13 Download gff for BS13215.complete
Subject Subject Range Query Range Percent Splice Strand
pon-RA 124..2135 17..2028 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:53 Download gff for BS13215.complete
Subject Subject Range Query Range Percent Splice Strand
pon-RA 136..2147 17..2028 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:53 Download gff for BS13215.complete
Subject Subject Range Query Range Percent Splice Strand
X 4636453..4636917 17..481 100 -> Plus
X 4637112..4638658 482..2028 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:30 Download gff for BS13215.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4530486..4530950 17..481 100 -> Plus
arm_X 4531145..4532691 482..2028 99   Plus

BS13215.3prime Sequence

763 bp (651 high quality bases) assembled on 2006-10-13

> BS13215.3prime
ATGGTCTAGAAAGCTTTCACTTGGCGGTTGCATAGGCATCGTGACTCTTG
TGGAACACATGGCGCAGCACGTCCCGCGTGGACCGCCTAATGCTGTTCCG
CAGTGAGTGCTTCTTCTCGTTGGTCAGCTGCTCGATGGTCATGTACTCGG
TTTGGGCAACGCTCGAGCGGAGCTTCATGGTCCGTTCGCTGGTGTCGATA
ATGGAGACGTCGGCGAGAACGGGCTCCATTTGCTCCTCCAACTCGGCCGC
CTTTTGTGGCCTCCTGCGCAGGCTGTGCCGAATGCTATTGAGTATGTTGT
GCTGTCCATGGCCCTGTCCATGTCCATGTTCATCCTTGTCCTCGGACTTT
ACCTCGGATGGCGTGGTGTGCGACGTGGGATGCATCAGTCTTCGAATGGA
CTTTCTTATCATGCCTTTCATTCCGATACTGGGCTTAACTTCTGCCGATT
TGGCGGACTTGCTTGATCCGATGGACTGCAGCGACTCCTTGCTGGCCGCC
TTGGAGGGCAGAGCGGCGGGTCTGTAGGCGCGAACGAAGCGCGCGGGTGC
CTTGAAGTCTAGATCATCGGGCTCGTCGTCGGATTCGGATTCGGAGGCAT
AGGCCACATCGCCGTCGGTTGGCTCCTTTTCCCGTTCCTCTTCTAGCTGC
CTTTTCCGGAGCTCCTCCTCCTCCAGCTTCTCCTTCTCCAGGTGCTTGGC
CCTCTCCTGGAGCTTTTTCCTGAGCTGCTCGTGCAACTTCTCCTGCAACT
TCTCTCGCTCCAA

BS13215.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3346-PA 2013 pon-RA 1267..2013 763..17 3585 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
pon-RA 2601 CG3346-RA 1402..2148 763..17 3645 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4637913..4638659 763..17 3645 99.2 Minus
Blast to na_te.dros performed on 2015-02-12 04:52:09 has no hits.

BS13215.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:33 Download gff for BS13215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3346-PA 1269..2013 17..761 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:13 Download gff for BS13215.3prime
Subject Subject Range Query Range Percent Splice Strand
pon-RA 1404..2150 13..761 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:18:45 Download gff for BS13215.3prime
Subject Subject Range Query Range Percent Splice Strand
pon-RA 1404..2150 13..761 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:18:45 Download gff for BS13215.3prime
Subject Subject Range Query Range Percent Splice Strand
X 4637915..4638661 13..761 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:13 Download gff for BS13215.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4531948..4532694 13..761 98   Minus

BS13215.5prime Sequence

789 bp (731 high quality bases) assembled on 2006-10-13

> BS13215.5prime
GAAGTTATCAGTCGACATGCTGGAGACGAAGAGCATAGCTGCATTGGCTT
TCACGGAGACGCCGCGCAAACGCAAAAGGGAGACGCTCTATAAAAATGCT
GCCCCGCCCCCGAATCCGCAGCAACAACCCCCAGAAAAGGACGCACAGGA
TGCAGCTGTCGCGTCGACAGAATCCTGCTTCACCAACGCCGCCTTCAGTT
CCACGCCCAAGAAGCTAATGGTGGCTCGTCGTCGTTTGGCCAAGGAGAAT
AGCCAACCCAATCCGTTTCCCGGCTTGGAGGTCAAGTCCATAGCTGATCT
GGCCCAGAAGCAGCAGCACCAGCAGCATCATCAGCAGCAGCAACAACAAC
AACAAAAGCTACCCACGAATCCTTTTGAGGTCCTGCGCCAGCCGCCCAAG
AAGAAGAAGCGCGAGCATGCCTGCTTCGAGAATCCTGGCCTGAATTTGGA
GCTGCCCGAGAAGCAGTTCAATCCATATGAGGTCGTCCGCTCGGCAACCA
CGCCCGCCAAGGGCTTCGTGAATCCTGCCCTGAATTTGCGCGGCAGTGAT
GCGCCGGCCTCGCTCAATCCCTTCGAGATCCATCGGCCCAGCGAGGCGTC
CGAGGCAGCCTGCAATCCCTCGGGTGTGGCCAATCCGGCACTGGCCGATA
GGGATTCGGAGGAGCAGCTGCCCACCAGCCTGAAGATCGGCTTGCCATTC
ACGCCAACGCTGGGCTGTCGCATCGATTTTCACGGGATGTCCCTTACGCA
GCTAACGCCTAGCAAGCTGCTGACCGAGAAGCTGGTCTT

BS13215.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3346-PA 2013 pon-RA 1..773 17..789 3815 99.7 Plus
CG18361-PB 1806 dsh-RB 289..329 311..351 155 95.1 Plus
CG9811-PA 1614 Rgk1-RA 235..272 314..351 140 94.7 Plus
CG33261-PI 1704 Trl-RI 1395..1431 319..355 135 94.5 Plus
CG33261-PI 1704 Trl-RI 1276..1317 314..355 135 92.8 Plus
CG33261-PA 1749 Trl-RA 1395..1431 319..355 135 94.5 Plus
CG33261-PA 1749 Trl-RA 1276..1317 314..355 135 92.8 Plus
CG33261-PF 1749 Trl-RF 1395..1431 319..355 135 94.5 Plus
CG33261-PF 1749 Trl-RF 1276..1317 314..355 135 92.8 Plus
CG12690-PA 3807 CHES-1-like-RA 859..900 314..355 135 92.8 Plus
CG32133-PA 6885 CG32133-RA 657..708 304..355 135 90.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
pon-RA 2601 CG3346-RA 136..908 17..789 3835 99.7 Plus
Cht6-RK 11742 CG43374-RK 135..180 309..354 185 93.5 Plus
Cht6-RJ 14423 CG43374-RJ 79..124 309..354 185 93.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4636453..4636919 17..483 2335 100 Plus
X 23542271 X 4637110..4637419 480..789 1520 99.4 Plus
X 23542271 X 10017616..10017661 309..354 185 93.5 Plus
3L 28110227 3L 14027758..14027809 355..304 185 90.4 Minus
3L 28110227 3L 14751472..14751523 360..309 185 90.4 Minus
2R 25286936 2R 11105919..11105963 355..311 180 93.3 Minus
Blast to na_te.dros performed 2015-02-11 18:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2364..2436 288..359 209 78.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2409 305..359 185 81.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2783..2835 310..362 184 83 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2355 306..359 162 77.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3279..3323 311..355 144 80 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2434..2476 312..354 143 81.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2943..2997 311..362 133 74.5 Plus
BS 5142 BS BS 5142bp 2018..2110 305..405 109 61.8 Plus

BS13215.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:33 Download gff for BS13215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3346-PA 1..773 17..789 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:01:10 Download gff for BS13215.5prime
Subject Subject Range Query Range Percent Splice Strand
pon-RA 136..908 17..789 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:43:31 Download gff for BS13215.5prime
Subject Subject Range Query Range Percent Splice Strand
pon-RA 136..908 17..789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:43:31 Download gff for BS13215.5prime
Subject Subject Range Query Range Percent Splice Strand
X 4636453..4636917 17..481 100 -> Plus
X 4637112..4637419 482..789 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:01:10 Download gff for BS13215.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4530486..4530950 17..481 100 -> Plus
arm_X 4531145..4531452 482..789 99   Plus

BS13215.pep Sequence

Translation from 16 to 2028

> BS13215.pep
MLETKSIAALAFTETPRKRKRETLYKNAAPPPNPQQQPPEKDAQDAAVAS
TESCFTNAAFSSTPKKLMVARRRLAKENSQPNPFPGLEVKSIADLAQKQQ
HQQHHQQQQQQQQKLPTNPFEVLRQPPKKKKREHACFENPGLNLELPEKQ
FNPYEVVRSATTPAKGFVNPALNLRGSDAPASLNPFEIHRPSEASEAACN
PSGVANPALADRDSEEQLPTSLKIGLPFTPTLGCRIDFHGMSLTQLTPSK
LLAEKLVFSPVPAPKRSLGAISEESSMDIGKELDRYQLELENSINEAKLR
KNGVLVDRELPRNSLEVELPKNTKVSLVMETNTQELMMQEVVTVDTQVER
RLVCTRRRTLTEISEASEVEEDTEKLLEQDREAEVILEQEKILEQEMVSE
RERHLTREKQLKQEKLLEREKHLEREKLQEKLHEQLREKLQERAKHLEKE
KLEEEELLERQLEEEREKEPTDGDVAYASESESDDEPDDLDFKAPARFVR
AYRPAALPSKAASKESLQSIGSSKSAKSAEVKPSIGMKGMIRKSIRRLMH
PTSHTTPSEVKSEDKDEHGHGQGHGQHNILNSIRHSLRRRPQKAAELEEQ
MEPVLADVSIIDTSERTMKLRSSVAQTEYMTIEQLTNEKKHSLRNSIRRS
TRDVLRHVFHKSHDAYATAK*

BS13215.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
pon-PA 670 CG3346-PA 1..670 1..670 3392 100 Plus
Trf2-PI 1714 CG18009-PI 770..958 255..466 180 30.3 Plus
Trf2-PE 1715 CG18009-PE 771..959 255..466 180 30.3 Plus
Trf2-PF 1715 CG18009-PF 771..959 255..466 180 30.3 Plus
Trf2-PG 1715 CG18009-PG 771..959 255..466 180 30.3 Plus
Trf2-PI 1714 CG18009-PI 822..1045 281..503 165 29.5 Plus
Trf2-PE 1715 CG18009-PE 823..1046 281..503 165 29.5 Plus
Trf2-PF 1715 CG18009-PF 823..1046 281..503 165 29.5 Plus