Clone Sequence Records
BS13215.complete Sequence
2045 bp assembled on 2009-12-07
GenBank Submission: KX802968
> BS13215.complete
GAAGTTATCAGTCGACATGCTGGAGACGAAGAGCATAGCTGCATTGGCTT
TCACGGAGACGCCGCGCAAACGCAAAAGGGAGACGCTCTATAAAAATGCT
GCCCCGCCCCCGAATCCGCAGCAACAACCCCCAGAAAAGGACGCACAGGA
TGCAGCTGTCGCGTCGACAGAATCCTGCTTCACCAACGCCGCCTTCAGTT
CCACGCCCAAGAAGCTAATGGTGGCTCGTCGTCGTTTGGCCAAGGAGAAT
AGCCAACCCAATCCGTTTCCCGGCTTGGAGGTCAAGTCCATAGCTGATCT
GGCCCAGAAGCAGCAGCACCAGCAGCATCATCAGCAGCAGCAACAACAAC
AACAAAAGCTACCCACGAATCCTTTTGAGGTCCTGCGCCAGCCGCCCAAG
AAGAAGAAGCGCGAGCATGCCTGCTTCGAGAATCCTGGCCTGAATTTGGA
GCTGCCCGAGAAGCAGTTCAATCCATATGAGGTCGTCCGCTCGGCAACCA
CGCCCGCCAAGGGCTTCGTGAATCCTGCCCTGAATTTGCGCGGCAGTGAT
GCGCCGGCCTCGCTCAATCCCTTCGAGATCCATCGGCCCAGCGAGGCGTC
CGAGGCAGCCTGCAATCCCTCGGGTGTGGCCAATCCGGCACTGGCCGATA
GGGATTCGGAGGAGCAGCTGCCCACCAGCCTGAAGATCGGCTTGCCATTC
ACGCCAACGCTGGGCTGTCGCATCGATTTTCACGGCATGTCCCTTACGCA
GCTAACGCCTAGCAAGCTGCTGGCCGAGAAGCTGGTCTTTTCGCCCGTTC
CGGCGCCCAAACGATCGCTGGGCGCCATCAGCGAGGAGTCGTCTATGGAC
ATTGGCAAGGAGCTGGATCGCTATCAACTGGAATTGGAGAACAGCATCAA
CGAGGCGAAGCTACGGAAGAATGGCGTGCTGGTGGATAGAGAGTTGCCCA
GGAATAGCTTGGAGGTGGAACTGCCCAAGAACACCAAGGTCTCCTTGGTC
ATGGAGACCAATACGCAGGAGCTGATGATGCAGGAAGTGGTGACGGTGGA
CACTCAAGTGGAGAGGCGTCTGGTTTGCACCAGACGACGCACACTAACCG
AGATTAGCGAGGCTTCCGAGGTGGAAGAGGACACGGAGAAGCTGCTCGAG
CAGGACCGCGAAGCAGAGGTGATTCTCGAGCAGGAGAAGATTCTAGAGCA
GGAGATGGTCTCAGAGCGGGAACGACATTTAACGAGGGAGAAGCAATTGA
AGCAGGAGAAACTCCTAGAGAGGGAAAAACATTTGGAGCGAGAGAAGCTG
CAGGAGAAGCTGCACGAGCAGCTCAGGGAAAAGCTCCAGGAGAGGGCCAA
GCACCTGGAGAAGGAGAAGCTGGAGGAGGAGGAGCTCCTGGAAAGGCAGC
TAGAAGAGGAACGGGAAAAGGAGCCAACCGACGGCGATGTGGCCTATGCC
TCCGAATCCGAATCCGACGACGAGCCCGATGATCTAGACTTCAAGGCACC
CGCGCGCTTCGTTCGCGCCTACAGACCCGCCGCTCTGCCCTCCAAGGCGG
CCAGCAAGGAGTCGCTGCAGTCCATCGGATCAAGCAAGTCCGCCAAATCG
GCAGAAGTTAAGCCCAGTATCGGAATGAAAGGCATGATAAGAAAGTCCAT
TCGAAGACTGATGCATCCCACGTCGCACACCACGCCATCCGAGGTAAAGT
CCGAGGACAAGGATGAACATGGACATGGACAGGGCCATGGACAGCACAAC
ATACTCAATAGCATTCGGCACAGCCTGCGCAGGAGGCCACAAAAGGCGGC
CGAGTTGGAGGAGCAAATGGAGCCCGTTCTCGCCGACGTCTCCATTATCG
ACACCAGCGAACGGACCATGAAGCTCCGCTCGAGCGTTGCCCAAACCGAG
TACATGACCATCGAGCAGCTGACCAACGAGAAGAAGCACTCACTGCGGAA
CAGCATTAGGCGGTCCACGCGGGACGTGCTGCGCCATGTGTTCCACAAGA
GTCACGATGCCTATGCAACCGCCAAGTGAAAGCTTTCTAGACCAT
BS13215.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pon-RA | 2013 | CG3346-PA | 1..2013 | 17..2029 | 10050 | 100 | Plus |
Trl-RK | 1872 | CG33261-PK | 1508..1559 | 309..360 | 185 | 90.4 | Plus |
Trl-RJ | 1827 | CG33261-PJ | 1508..1559 | 309..360 | 185 | 90.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:58:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pon-RA | 2601 | CG3346-RA | 136..2148 | 17..2029 | 10050 | 100 | Plus |
Cht6-RK | 11742 | CG43374-RK | 135..180 | 309..354 | 185 | 93.5 | Plus |
Cht6-RJ | 14423 | CG43374-RJ | 79..124 | 309..354 | 185 | 93.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:58:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4637110..4638659 | 480..2029 | 7735 | 99.9 | Plus |
X | 23542271 | X | 4636453..4636919 | 17..483 | 2335 | 100 | Plus |
X | 23542271 | X | 10017616..10017661 | 309..354 | 185 | 93.5 | Plus |
3L | 28110227 | 3L | 14027758..14027809 | 355..304 | 185 | 90.4 | Minus |
3L | 28110227 | 3L | 14751472..14751523 | 360..309 | 185 | 90.4 | Minus |
Blast to na_te.dros performed 2014-11-28 01:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2436 | 288..359 | 209 | 78.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2409 | 305..359 | 185 | 81.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2835 | 310..362 | 184 | 83 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2355 | 306..359 | 162 | 77.8 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3279..3323 | 311..355 | 144 | 80 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2476 | 312..354 | 143 | 81.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2943..2997 | 311..362 | 133 | 74.5 | Plus |
BS13215.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:45 Download gff for
BS13215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 124..2135 | 17..2028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:30 Download gff for
BS13215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 136..2147 | 17..2028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:13 Download gff for
BS13215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 124..2135 | 17..2028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:53 Download gff for
BS13215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 136..2147 | 17..2028 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:53 Download gff for
BS13215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4636453..4636917 | 17..481 | 100 | -> | Plus |
X | 4637112..4638658 | 482..2028 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:30 Download gff for
BS13215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4530486..4530950 | 17..481 | 100 | -> | Plus |
arm_X | 4531145..4532691 | 482..2028 | 99 | | Plus |
BS13215.3prime Sequence
763 bp (651 high quality bases) assembled on 2006-10-13
> BS13215.3prime
ATGGTCTAGAAAGCTTTCACTTGGCGGTTGCATAGGCATCGTGACTCTTG
TGGAACACATGGCGCAGCACGTCCCGCGTGGACCGCCTAATGCTGTTCCG
CAGTGAGTGCTTCTTCTCGTTGGTCAGCTGCTCGATGGTCATGTACTCGG
TTTGGGCAACGCTCGAGCGGAGCTTCATGGTCCGTTCGCTGGTGTCGATA
ATGGAGACGTCGGCGAGAACGGGCTCCATTTGCTCCTCCAACTCGGCCGC
CTTTTGTGGCCTCCTGCGCAGGCTGTGCCGAATGCTATTGAGTATGTTGT
GCTGTCCATGGCCCTGTCCATGTCCATGTTCATCCTTGTCCTCGGACTTT
ACCTCGGATGGCGTGGTGTGCGACGTGGGATGCATCAGTCTTCGAATGGA
CTTTCTTATCATGCCTTTCATTCCGATACTGGGCTTAACTTCTGCCGATT
TGGCGGACTTGCTTGATCCGATGGACTGCAGCGACTCCTTGCTGGCCGCC
TTGGAGGGCAGAGCGGCGGGTCTGTAGGCGCGAACGAAGCGCGCGGGTGC
CTTGAAGTCTAGATCATCGGGCTCGTCGTCGGATTCGGATTCGGAGGCAT
AGGCCACATCGCCGTCGGTTGGCTCCTTTTCCCGTTCCTCTTCTAGCTGC
CTTTTCCGGAGCTCCTCCTCCTCCAGCTTCTCCTTCTCCAGGTGCTTGGC
CCTCTCCTGGAGCTTTTTCCTGAGCTGCTCGTGCAACTTCTCCTGCAACT
TCTCTCGCTCCAA
BS13215.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3346-PA | 2013 | pon-RA | 1267..2013 | 763..17 | 3585 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pon-RA | 2601 | CG3346-RA | 1402..2148 | 763..17 | 3645 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4637913..4638659 | 763..17 | 3645 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:52:09 has no hits.
BS13215.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:33 Download gff for
BS13215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3346-PA | 1269..2013 | 17..761 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:13 Download gff for
BS13215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 1404..2150 | 13..761 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:18:45 Download gff for
BS13215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 1404..2150 | 13..761 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:18:45 Download gff for
BS13215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4637915..4638661 | 13..761 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:13 Download gff for
BS13215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4531948..4532694 | 13..761 | 98 | | Minus |
BS13215.5prime Sequence
789 bp (731 high quality bases) assembled on 2006-10-13
> BS13215.5prime
GAAGTTATCAGTCGACATGCTGGAGACGAAGAGCATAGCTGCATTGGCTT
TCACGGAGACGCCGCGCAAACGCAAAAGGGAGACGCTCTATAAAAATGCT
GCCCCGCCCCCGAATCCGCAGCAACAACCCCCAGAAAAGGACGCACAGGA
TGCAGCTGTCGCGTCGACAGAATCCTGCTTCACCAACGCCGCCTTCAGTT
CCACGCCCAAGAAGCTAATGGTGGCTCGTCGTCGTTTGGCCAAGGAGAAT
AGCCAACCCAATCCGTTTCCCGGCTTGGAGGTCAAGTCCATAGCTGATCT
GGCCCAGAAGCAGCAGCACCAGCAGCATCATCAGCAGCAGCAACAACAAC
AACAAAAGCTACCCACGAATCCTTTTGAGGTCCTGCGCCAGCCGCCCAAG
AAGAAGAAGCGCGAGCATGCCTGCTTCGAGAATCCTGGCCTGAATTTGGA
GCTGCCCGAGAAGCAGTTCAATCCATATGAGGTCGTCCGCTCGGCAACCA
CGCCCGCCAAGGGCTTCGTGAATCCTGCCCTGAATTTGCGCGGCAGTGAT
GCGCCGGCCTCGCTCAATCCCTTCGAGATCCATCGGCCCAGCGAGGCGTC
CGAGGCAGCCTGCAATCCCTCGGGTGTGGCCAATCCGGCACTGGCCGATA
GGGATTCGGAGGAGCAGCTGCCCACCAGCCTGAAGATCGGCTTGCCATTC
ACGCCAACGCTGGGCTGTCGCATCGATTTTCACGGGATGTCCCTTACGCA
GCTAACGCCTAGCAAGCTGCTGACCGAGAAGCTGGTCTT
BS13215.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:43:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3346-PA | 2013 | pon-RA | 1..773 | 17..789 | 3815 | 99.7 | Plus |
CG18361-PB | 1806 | dsh-RB | 289..329 | 311..351 | 155 | 95.1 | Plus |
CG9811-PA | 1614 | Rgk1-RA | 235..272 | 314..351 | 140 | 94.7 | Plus |
CG33261-PI | 1704 | Trl-RI | 1395..1431 | 319..355 | 135 | 94.5 | Plus |
CG33261-PI | 1704 | Trl-RI | 1276..1317 | 314..355 | 135 | 92.8 | Plus |
CG33261-PA | 1749 | Trl-RA | 1395..1431 | 319..355 | 135 | 94.5 | Plus |
CG33261-PA | 1749 | Trl-RA | 1276..1317 | 314..355 | 135 | 92.8 | Plus |
CG33261-PF | 1749 | Trl-RF | 1395..1431 | 319..355 | 135 | 94.5 | Plus |
CG33261-PF | 1749 | Trl-RF | 1276..1317 | 314..355 | 135 | 92.8 | Plus |
CG12690-PA | 3807 | CHES-1-like-RA | 859..900 | 314..355 | 135 | 92.8 | Plus |
CG32133-PA | 6885 | CG32133-RA | 657..708 | 304..355 | 135 | 90.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pon-RA | 2601 | CG3346-RA | 136..908 | 17..789 | 3835 | 99.7 | Plus |
Cht6-RK | 11742 | CG43374-RK | 135..180 | 309..354 | 185 | 93.5 | Plus |
Cht6-RJ | 14423 | CG43374-RJ | 79..124 | 309..354 | 185 | 93.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4636453..4636919 | 17..483 | 2335 | 100 | Plus |
X | 23542271 | X | 4637110..4637419 | 480..789 | 1520 | 99.4 | Plus |
X | 23542271 | X | 10017616..10017661 | 309..354 | 185 | 93.5 | Plus |
3L | 28110227 | 3L | 14027758..14027809 | 355..304 | 185 | 90.4 | Minus |
3L | 28110227 | 3L | 14751472..14751523 | 360..309 | 185 | 90.4 | Minus |
2R | 25286936 | 2R | 11105919..11105963 | 355..311 | 180 | 93.3 | Minus |
Blast to na_te.dros performed 2015-02-11 18:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2436 | 288..359 | 209 | 78.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2409 | 305..359 | 185 | 81.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2835 | 310..362 | 184 | 83 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2355 | 306..359 | 162 | 77.8 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3279..3323 | 311..355 | 144 | 80 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2476 | 312..354 | 143 | 81.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2943..2997 | 311..362 | 133 | 74.5 | Plus |
BS | 5142 | BS BS 5142bp | 2018..2110 | 305..405 | 109 | 61.8 | Plus |
BS13215.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:33 Download gff for
BS13215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3346-PA | 1..773 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:01:10 Download gff for
BS13215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 136..908 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:43:31 Download gff for
BS13215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 136..908 | 17..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:43:31 Download gff for
BS13215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4636453..4636917 | 17..481 | 100 | -> | Plus |
X | 4637112..4637419 | 482..789 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:01:10 Download gff for
BS13215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4530486..4530950 | 17..481 | 100 | -> | Plus |
arm_X | 4531145..4531452 | 482..789 | 99 | | Plus |
BS13215.pep Sequence
Translation from 16 to 2028
> BS13215.pep
MLETKSIAALAFTETPRKRKRETLYKNAAPPPNPQQQPPEKDAQDAAVAS
TESCFTNAAFSSTPKKLMVARRRLAKENSQPNPFPGLEVKSIADLAQKQQ
HQQHHQQQQQQQQKLPTNPFEVLRQPPKKKKREHACFENPGLNLELPEKQ
FNPYEVVRSATTPAKGFVNPALNLRGSDAPASLNPFEIHRPSEASEAACN
PSGVANPALADRDSEEQLPTSLKIGLPFTPTLGCRIDFHGMSLTQLTPSK
LLAEKLVFSPVPAPKRSLGAISEESSMDIGKELDRYQLELENSINEAKLR
KNGVLVDRELPRNSLEVELPKNTKVSLVMETNTQELMMQEVVTVDTQVER
RLVCTRRRTLTEISEASEVEEDTEKLLEQDREAEVILEQEKILEQEMVSE
RERHLTREKQLKQEKLLEREKHLEREKLQEKLHEQLREKLQERAKHLEKE
KLEEEELLERQLEEEREKEPTDGDVAYASESESDDEPDDLDFKAPARFVR
AYRPAALPSKAASKESLQSIGSSKSAKSAEVKPSIGMKGMIRKSIRRLMH
PTSHTTPSEVKSEDKDEHGHGQGHGQHNILNSIRHSLRRRPQKAAELEEQ
MEPVLADVSIIDTSERTMKLRSSVAQTEYMTIEQLTNEKKHSLRNSIRRS
TRDVLRHVFHKSHDAYATAK*
BS13215.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pon-PA | 670 | CG3346-PA | 1..670 | 1..670 | 3392 | 100 | Plus |
Trf2-PI | 1714 | CG18009-PI | 770..958 | 255..466 | 180 | 30.3 | Plus |
Trf2-PE | 1715 | CG18009-PE | 771..959 | 255..466 | 180 | 30.3 | Plus |
Trf2-PF | 1715 | CG18009-PF | 771..959 | 255..466 | 180 | 30.3 | Plus |
Trf2-PG | 1715 | CG18009-PG | 771..959 | 255..466 | 180 | 30.3 | Plus |
Trf2-PI | 1714 | CG18009-PI | 822..1045 | 281..503 | 165 | 29.5 | Plus |
Trf2-PE | 1715 | CG18009-PE | 823..1046 | 281..503 | 165 | 29.5 | Plus |
Trf2-PF | 1715 | CG18009-PF | 823..1046 | 281..503 | 165 | 29.5 | Plus |