Clone Sequence Records
BS13216.3prime Sequence
599 bp (588 high quality bases) assembled on 2006-10-13
> BS13216.3prime
ATGGTCTAGAAAGCTTTCATTTGACCTCCCACTTCATGGATTGGTGCAGG
TAGTCGCCATCGGGACTGACGTAATCCTTAATGGGGGGCGTGGCAACGGG
TCCTTTGACGGCGACGGGCAGCAGCTGGGGATCGATATCGATGGCCGCCT
GGTAGAGCTCCTCGGACTCGCGCCGAAGTTCCGCCAGCGCCTTGTTTTGC
GCCTGGACCAGCCGGTCGATGATCTGAAAGTCTGCTACGCGCTCGTCGTG
CTTGTAGTGCGCCCACTGCTTCTTGAGGAGAGCACGTTCCTCCAACTGGT
CGATGGTCAGTGGAGCTAGCTTCCGCTGCCGTTTGTCCTTTTCGTCGATG
AGCTCCAGTGGAACCTCCAGTTCATCCACGGGCTTCAGCTGACGGGCATT
CTTCTCCAGCCGGCGAATCTGCTTTTCGATCTTCTTCTTCTTGCGATCCT
CGCGCTGCTTGACAATCTGCGGATCCAGTTTCTTCTTTTTCTTCAGGGGC
TCCGCACAAAGAACTGGTGTCGTGTGGAGGCAACGTGCAAAGGCGGCACC
GGCGACGCCGCCACTTCTCTGCAGACTCAATCTGGCAAAGGCGCCCAGC
BS13216.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5242-PA | 591 | mRpL40-RA | 9..591 | 599..17 | 2915 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:09:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL40-RA | 716 | CG5242-RA | 82..664 | 599..17 | 2915 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11408386..11408704 | 335..17 | 1595 | 100 | Minus |
3R | 32079331 | 3R | 11408078..11408326 | 584..336 | 1245 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:09:16 has no hits.
BS13216.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:33 Download gff for
BS13216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5242-PA | 9..591 | 17..599 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:38 Download gff for
BS13216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL40-RA | 82..667 | 13..599 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:51 Download gff for
BS13216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL40-RA | 82..667 | 13..599 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:51 Download gff for
BS13216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11407999..11408016 | 582..599 | 100 | -> | Minus |
3R | 11408081..11408326 | 336..581 | 100 | -> | Minus |
3R | 11408386..11408707 | 13..335 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:38 Download gff for
BS13216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7233803..7234048 | 336..581 | 100 | -> | Minus |
arm_3R | 7233721..7233738 | 582..599 | 100 | -> | Minus |
arm_3R | 7234108..7234429 | 13..335 | 99 | | Minus |
BS13216.5prime Sequence
621 bp (621 high quality bases) assembled on 2006-10-13
> BS13216.5prime
GAAGTTATCAGTCGACATGTCGCTGCTGGGCGCCTTTGCCAGATTGAGTC
TGCAGAGAAGTGGCGGCGTCGCCGGTGCCGCCTTTGCACGTTGCCTCCAC
ACGACACCAGTTCTTTGTGCGGAGCCCCTGAAGAAAAAGAAGAAACTGGA
TCCGCAGATTGTCAAGCAGCGCGAGGATCGCAAGAAGAAGAAGATCGAAA
AGCAGATTCGCCGGCTGGAGAAGAATGCCCGTCAGCTGAAGCCCGTGGAT
GAACTGGAGGTTCCACTGGAGCTCATCGACGAAAAGGACAAACGGCAGCG
GAAGCTAGCTCCACTGACCATCGACCAGTTGGAGGAACGTGCTCTCCTCA
AGAAGCAGTGGGCGCACTACAAGCACGACGAGCGCGTAGCAGACTTTCAG
ATCATCGACCGGCTGGTCCAGGCGCAAAACAAGGCGCTGGCGGAACTTCG
GCGCGAGTCCGAGGAGCTCTACCAGGCGGCCATCGATATCGATCCCCAGC
TGCTGCCCGTCGCCGTCAAAGGACCCGTTGCCACGCCCCCCATTAAGGAT
TACGTCAGTCCCGATGGCGACTACCTGCACCAATCCATGAAGTGGGAGGT
CAAAATGAAGCTTTCTAGACC
BS13216.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5242-PA | 591 | mRpL40-RA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL40-RA | 716 | CG5242-RA | 74..661 | 17..604 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11408386..11408701 | 289..604 | 1580 | 100 | Plus |
3R | 32079331 | 3R | 11408078..11408326 | 40..288 | 1245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:50:53 has no hits.
BS13216.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:34 Download gff for
BS13216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5242-PA | 1..591 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:13 Download gff for
BS13216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL40-RA | 74..672 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:00 Download gff for
BS13216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL40-RA | 74..672 | 17..617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:00 Download gff for
BS13216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11407991..11408016 | 17..42 | 100 | -> | Plus |
3R | 11408081..11408326 | 43..288 | 100 | -> | Plus |
3R | 11408386..11408712 | 289..617 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:13 Download gff for
BS13216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7233713..7233738 | 17..42 | 100 | -> | Plus |
arm_3R | 7233803..7234048 | 43..288 | 100 | -> | Plus |
arm_3R | 7234108..7234434 | 289..617 | 98 | | Plus |
BS13216.complete Sequence
623 bp assembled on 2006-11-01
GenBank Submission: FJ637392
> BS13216.complete
GAAGTTATCAGTCGACATGTCGCTGCTGGGCGCCTTTGCCAGATTGAGTC
TGCAGAGAAGTGGCGGCGTCGCCGGTGCCGCCTTTGCACGTTGCCTCCAC
ACGACACCAGTTCTTTGTGCGGAGCCCCTGAAGAAAAAGAAGAAACTGGA
TCCGCAGATTGTCAAGCAGCGCGAGGATCGCAAGAAGAAGAAGATCGAAA
AGCAGATTCGCCGGCTGGAGAAGAATGCCCGTCAGCTGAAGCCCGTGGAT
GAACTGGAGGTTCCACTGGAGCTCATCGACGAAAAGGACAAACGGCAGCG
GAAGCTAGCTCCACTGACCATCGACCAGTTGGAGGAACGTGCTCTCCTCA
AGAAGCAGTGGGCGCACTACAAGCACGACGAGCGCGTAGCAGACTTTCAG
ATCATCGACCGGCTGGTCCAGGCGCAAAACAAGGCGCTGGCGGAACTTCG
GCGCGAGTCCGAGGAGCTCTACCAGGCGGCCATCGATATCGATCCCCAGC
TGCTGCCCGTCGCCGTCAAAGGACCCGTTGCCACGCCCCCCATTAAGGAT
TACGTCAGTCCCGATGGCGACTACCTGCACCAATCCATGAAGTGGGAGGT
CAAATGAAAGCTTTCTAGACCAT
BS13216.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL40-RA | 591 | CG5242-PA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL40-RA | 716 | CG5242-RA | 74..664 | 17..607 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11408386..11408704 | 289..607 | 1595 | 100 | Plus |
3R | 32079331 | 3R | 11408078..11408326 | 40..288 | 1245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:00:16 has no hits.
BS13216.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:07 Download gff for
BS13216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL40-RA | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:58 Download gff for
BS13216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL40-RA | 69..662 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:29 Download gff for
BS13216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL40-RA | 74..663 | 17..606 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:07 Download gff for
BS13216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL40-RA | 69..662 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:36 Download gff for
BS13216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL40-RA | 74..663 | 17..606 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:36 Download gff for
BS13216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11408081..11408326 | 43..288 | 100 | -> | Plus |
3R | 11408386..11408703 | 289..606 | 100 | | Plus |
3R | 11407991..11408016 | 17..42 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:29 Download gff for
BS13216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7233713..7233738 | 17..42 | 100 | -> | Plus |
arm_3R | 7233803..7234048 | 43..288 | 100 | -> | Plus |
arm_3R | 7234108..7234425 | 289..606 | 100 | | Plus |
BS13216.pep Sequence
Translation from 16 to 606
> BS13216.pep
MSLLGAFARLSLQRSGGVAGAAFARCLHTTPVLCAEPLKKKKKLDPQIVK
QREDRKKKKIEKQIRRLEKNARQLKPVDELEVPLELIDEKDKRQRKLAPL
TIDQLEERALLKKQWAHYKHDERVADFQIIDRLVQAQNKALAELRRESEE
LYQAAIDIDPQLLPVAVKGPVATPPIKDYVSPDGDYLHQSMKWEVK*
BS13216.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL40-PA | 196 | CG5242-PA | 1..196 | 1..196 | 997 | 100 | Plus |