Clone BS13216 Report

Search the DGRC for BS13216

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL40-RA
Protein status:BS13216.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13216.3prime Sequence

599 bp (588 high quality bases) assembled on 2006-10-13

> BS13216.3prime
ATGGTCTAGAAAGCTTTCATTTGACCTCCCACTTCATGGATTGGTGCAGG
TAGTCGCCATCGGGACTGACGTAATCCTTAATGGGGGGCGTGGCAACGGG
TCCTTTGACGGCGACGGGCAGCAGCTGGGGATCGATATCGATGGCCGCCT
GGTAGAGCTCCTCGGACTCGCGCCGAAGTTCCGCCAGCGCCTTGTTTTGC
GCCTGGACCAGCCGGTCGATGATCTGAAAGTCTGCTACGCGCTCGTCGTG
CTTGTAGTGCGCCCACTGCTTCTTGAGGAGAGCACGTTCCTCCAACTGGT
CGATGGTCAGTGGAGCTAGCTTCCGCTGCCGTTTGTCCTTTTCGTCGATG
AGCTCCAGTGGAACCTCCAGTTCATCCACGGGCTTCAGCTGACGGGCATT
CTTCTCCAGCCGGCGAATCTGCTTTTCGATCTTCTTCTTCTTGCGATCCT
CGCGCTGCTTGACAATCTGCGGATCCAGTTTCTTCTTTTTCTTCAGGGGC
TCCGCACAAAGAACTGGTGTCGTGTGGAGGCAACGTGCAAAGGCGGCACC
GGCGACGCCGCCACTTCTCTGCAGACTCAATCTGGCAAAGGCGCCCAGC

BS13216.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5242-PA 591 mRpL40-RA 9..591 599..17 2915 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL40-RA 716 CG5242-RA 82..664 599..17 2915 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11408386..11408704 335..17 1595 100 Minus
3R 32079331 3R 11408078..11408326 584..336 1245 100 Minus
Blast to na_te.dros performed on 2015-01-30 18:09:16 has no hits.

BS13216.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:33 Download gff for BS13216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5242-PA 9..591 17..599 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:38 Download gff for BS13216.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL40-RA 82..667 13..599 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:51 Download gff for BS13216.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL40-RA 82..667 13..599 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:51 Download gff for BS13216.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11407999..11408016 582..599 100 -> Minus
3R 11408081..11408326 336..581 100 -> Minus
3R 11408386..11408707 13..335 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:38 Download gff for BS13216.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7233803..7234048 336..581 100 -> Minus
arm_3R 7233721..7233738 582..599 100 -> Minus
arm_3R 7234108..7234429 13..335 99   Minus

BS13216.5prime Sequence

621 bp (621 high quality bases) assembled on 2006-10-13

> BS13216.5prime
GAAGTTATCAGTCGACATGTCGCTGCTGGGCGCCTTTGCCAGATTGAGTC
TGCAGAGAAGTGGCGGCGTCGCCGGTGCCGCCTTTGCACGTTGCCTCCAC
ACGACACCAGTTCTTTGTGCGGAGCCCCTGAAGAAAAAGAAGAAACTGGA
TCCGCAGATTGTCAAGCAGCGCGAGGATCGCAAGAAGAAGAAGATCGAAA
AGCAGATTCGCCGGCTGGAGAAGAATGCCCGTCAGCTGAAGCCCGTGGAT
GAACTGGAGGTTCCACTGGAGCTCATCGACGAAAAGGACAAACGGCAGCG
GAAGCTAGCTCCACTGACCATCGACCAGTTGGAGGAACGTGCTCTCCTCA
AGAAGCAGTGGGCGCACTACAAGCACGACGAGCGCGTAGCAGACTTTCAG
ATCATCGACCGGCTGGTCCAGGCGCAAAACAAGGCGCTGGCGGAACTTCG
GCGCGAGTCCGAGGAGCTCTACCAGGCGGCCATCGATATCGATCCCCAGC
TGCTGCCCGTCGCCGTCAAAGGACCCGTTGCCACGCCCCCCATTAAGGAT
TACGTCAGTCCCGATGGCGACTACCTGCACCAATCCATGAAGTGGGAGGT
CAAAATGAAGCTTTCTAGACC

BS13216.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5242-PA 591 mRpL40-RA 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL40-RA 716 CG5242-RA 74..661 17..604 2940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11408386..11408701 289..604 1580 100 Plus
3R 32079331 3R 11408078..11408326 40..288 1245 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:50:53 has no hits.

BS13216.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:34 Download gff for BS13216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5242-PA 1..591 17..608 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:13 Download gff for BS13216.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL40-RA 74..672 17..617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:00 Download gff for BS13216.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL40-RA 74..672 17..617 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:00 Download gff for BS13216.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11407991..11408016 17..42 100 -> Plus
3R 11408081..11408326 43..288 100 -> Plus
3R 11408386..11408712 289..617 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:13 Download gff for BS13216.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7233713..7233738 17..42 100 -> Plus
arm_3R 7233803..7234048 43..288 100 -> Plus
arm_3R 7234108..7234434 289..617 98   Plus

BS13216.complete Sequence

623 bp assembled on 2006-11-01

GenBank Submission: FJ637392

> BS13216.complete
GAAGTTATCAGTCGACATGTCGCTGCTGGGCGCCTTTGCCAGATTGAGTC
TGCAGAGAAGTGGCGGCGTCGCCGGTGCCGCCTTTGCACGTTGCCTCCAC
ACGACACCAGTTCTTTGTGCGGAGCCCCTGAAGAAAAAGAAGAAACTGGA
TCCGCAGATTGTCAAGCAGCGCGAGGATCGCAAGAAGAAGAAGATCGAAA
AGCAGATTCGCCGGCTGGAGAAGAATGCCCGTCAGCTGAAGCCCGTGGAT
GAACTGGAGGTTCCACTGGAGCTCATCGACGAAAAGGACAAACGGCAGCG
GAAGCTAGCTCCACTGACCATCGACCAGTTGGAGGAACGTGCTCTCCTCA
AGAAGCAGTGGGCGCACTACAAGCACGACGAGCGCGTAGCAGACTTTCAG
ATCATCGACCGGCTGGTCCAGGCGCAAAACAAGGCGCTGGCGGAACTTCG
GCGCGAGTCCGAGGAGCTCTACCAGGCGGCCATCGATATCGATCCCCAGC
TGCTGCCCGTCGCCGTCAAAGGACCCGTTGCCACGCCCCCCATTAAGGAT
TACGTCAGTCCCGATGGCGACTACCTGCACCAATCCATGAAGTGGGAGGT
CAAATGAAAGCTTTCTAGACCAT

BS13216.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL40-RA 591 CG5242-PA 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL40-RA 716 CG5242-RA 74..664 17..607 2955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11408386..11408704 289..607 1595 100 Plus
3R 32079331 3R 11408078..11408326 40..288 1245 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:00:16 has no hits.

BS13216.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:07 Download gff for BS13216.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL40-RA 1..591 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:58 Download gff for BS13216.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL40-RA 69..662 17..611 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:29 Download gff for BS13216.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL40-RA 74..663 17..606 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:07 Download gff for BS13216.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL40-RA 69..662 17..611 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:36 Download gff for BS13216.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL40-RA 74..663 17..606 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:36 Download gff for BS13216.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11408081..11408326 43..288 100 -> Plus
3R 11408386..11408703 289..606 100   Plus
3R 11407991..11408016 17..42 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:29 Download gff for BS13216.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7233713..7233738 17..42 100 -> Plus
arm_3R 7233803..7234048 43..288 100 -> Plus
arm_3R 7234108..7234425 289..606 100   Plus

BS13216.pep Sequence

Translation from 16 to 606

> BS13216.pep
MSLLGAFARLSLQRSGGVAGAAFARCLHTTPVLCAEPLKKKKKLDPQIVK
QREDRKKKKIEKQIRRLEKNARQLKPVDELEVPLELIDEKDKRQRKLAPL
TIDQLEERALLKKQWAHYKHDERVADFQIIDRLVQAQNKALAELRRESEE
LYQAAIDIDPQLLPVAVKGPVATPPIKDYVSPDGDYLHQSMKWEVK*

BS13216.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL40-PA 196 CG5242-PA 1..196 1..196 997 100 Plus