Clone BS13217 Report

Search the DGRC for BS13217

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG14569-RA
Protein status:BS13217.pep: full length peptide match
Sequenced Size:620

Clone Sequence Records

BS13217.complete Sequence

620 bp assembled on 2010-02-09

GenBank Submission: KX804067

> BS13217.complete
GAAGTTATCAGTCGACATGTTTAAACCGACTGGCGCACCAATTGCTATTC
TTGTCCTGAGCCTGTTGGCGCTGAGCTCCGCGGAGCCGATCCGCCGGAGG
TTCTTGGCGCGCCAAGTGGAGGCTATACCCAGTCCTTCGCCCACCGGATA
TCCGGAGGCGGGCATCACCCCGAGTGTTCCCTTCGATTTACCCAGTTCGA
CTGTCAAGCCGGAGAACACTTATCTGCCGCCTGATAACACCTATGGACCT
CCGGACAACACATACGGGCCACCAGATAACACTTATGGACCTCCAGAGAC
CGACTCCGTGCCGGCTATTGCTCCCGAGGCTGAGCCGCTACCAGAGAATC
CCATCGAGACTGATGATATTCCAGAGACTGAGGAAGCATCGGTTGACGGT
GCCAAGCTGCAGCCCGCTGATGAGGACGCCGAGGAGGATGAACCGCAGCT
GGATGTTGCTGAGGATGGCACTGTGATCGTTGTAGCTAGCAGTCTTGACC
AGCCACAGTCCGTCCAGTCCGCCCGACTCTACCAGCGATTTCCGCAAGGA
CGGCGTTCCCAGAGGCCCGTTCCTCAGCGTCTAATCCTGCGTCGCAGTTG
GTAGAAGCTTTCTAGACCAT

BS13217.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG14569-RA 588 CG14569-PA 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG14569-RA 826 CG14569-RA 30..618 17..605 2945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21730933..21731521 605..17 2945 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:29:52 has no hits.

BS13217.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:43 Download gff for BS13217.complete
Subject Subject Range Query Range Percent Splice Strand
CG14569-RA 33..614 23..604 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:27 Download gff for BS13217.complete
Subject Subject Range Query Range Percent Splice Strand
CG14569-RA 36..617 23..604 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:43 Download gff for BS13217.complete
Subject Subject Range Query Range Percent Splice Strand
CG14569-RA 33..614 23..604 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:17 Download gff for BS13217.complete
Subject Subject Range Query Range Percent Splice Strand
CG14569-RA 36..617 23..604 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:17 Download gff for BS13217.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21730934..21731515 23..604 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:27 Download gff for BS13217.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21724034..21724615 23..604 100   Minus

BS13217.5prime Sequence

618 bp (618 high quality bases) assembled on 2006-10-13

> BS13217.5prime
GAAGTTATCACTCGACATGTTTAAACCGACTGGCGCACCAATTGCTATTC
TTGTCCTGAGCCTGTTGGCGCTGAGCTCCGCGGAGCCGATCCGCCGGAGG
TTCTTGGCGCGCCAAGTGGAGGCTATACCCAGTCCTTCGCCCACCGGATA
TCCGGAGGCGGGCATCACCCCGAGTGTTCCCTTCGATTTACCCAGTTCGA
CTGTCAAGCCGGAGAACACTTATCTGCCGCCTGATAACACCTATGGACCT
CCGGACAACACATACGGGCCACCAGATAACACTTATGGACCTCCAGAGAC
CGACTCCGTGCCGGCTATTGCTCCCGAGGCTGAGCCGCTACCAGAGAATC
CCATCGAGACTGATGATATTCCAGAGACTGAGGAAGCATCGGTTGACGGT
GCCAAGCTGCAGCCCGCTGATGAGGACGCCGAGGAGGATGAACCGCAGCT
GGATGTTGCTGAGGATGGCACTGTGATCGTTGTAGCTAGCAGTCTTGACC
AGCCACAGTCCGTCCAGTCCGCCCGACTCTACCAGCGATTTCCGCAAGGA
CGGCGTTCCCAGAGGCCCGTTCCTCAGCGTCTAATCCTGCGTCGCAGTTG
GTAGAAGCTTTCTAGACC

BS13217.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14569-PA 588 CG14569-RA 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14569-RA 826 CG14569-RA 30..618 17..605 2945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21730933..21731521 605..17 2945 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:51:23 has no hits.

BS13217.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:34 Download gff for BS13217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14569-PA 1..588 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:37:12 Download gff for BS13217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14569-RA 30..627 17..617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:09:15 Download gff for BS13217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14569-RA 30..627 17..617 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:09:15 Download gff for BS13217.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21730924..21731521 17..617 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:37:12 Download gff for BS13217.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21724024..21724621 17..617 99   Minus

BS13217.pep Sequence

Translation from 16 to 603

> BS13217.pep
MFKPTGAPIAILVLSLLALSSAEPIRRRFLARQVEAIPSPSPTGYPEAGI
TPSVPFDLPSSTVKPENTYLPPDNTYGPPDNTYGPPDNTYGPPETDSVPA
IAPEAEPLPENPIETDDIPETEEASVDGAKLQPADEDAEEDEPQLDVAED
GTVIVVASSLDQPQSVQSARLYQRFPQGRRSQRPVPQRLILRRSW*

BS13217.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14569-PA 195 CG14569-PA 1..195 1..195 1017 100 Plus
CG14568-PA 171 CG14568-PA 10..139 11..114 217 42.5 Plus
CG14570-PA 228 CG14570-PA 5..127 4..111 183 36.1 Plus