Clone Sequence Records
BS13217.complete Sequence
620 bp assembled on 2010-02-09
GenBank Submission: KX804067
> BS13217.complete
GAAGTTATCAGTCGACATGTTTAAACCGACTGGCGCACCAATTGCTATTC
TTGTCCTGAGCCTGTTGGCGCTGAGCTCCGCGGAGCCGATCCGCCGGAGG
TTCTTGGCGCGCCAAGTGGAGGCTATACCCAGTCCTTCGCCCACCGGATA
TCCGGAGGCGGGCATCACCCCGAGTGTTCCCTTCGATTTACCCAGTTCGA
CTGTCAAGCCGGAGAACACTTATCTGCCGCCTGATAACACCTATGGACCT
CCGGACAACACATACGGGCCACCAGATAACACTTATGGACCTCCAGAGAC
CGACTCCGTGCCGGCTATTGCTCCCGAGGCTGAGCCGCTACCAGAGAATC
CCATCGAGACTGATGATATTCCAGAGACTGAGGAAGCATCGGTTGACGGT
GCCAAGCTGCAGCCCGCTGATGAGGACGCCGAGGAGGATGAACCGCAGCT
GGATGTTGCTGAGGATGGCACTGTGATCGTTGTAGCTAGCAGTCTTGACC
AGCCACAGTCCGTCCAGTCCGCCCGACTCTACCAGCGATTTCCGCAAGGA
CGGCGTTCCCAGAGGCCCGTTCCTCAGCGTCTAATCCTGCGTCGCAGTTG
GTAGAAGCTTTCTAGACCAT
BS13217.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:29:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14569-RA | 588 | CG14569-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:29:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14569-RA | 826 | CG14569-RA | 30..618 | 17..605 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21730933..21731521 | 605..17 | 2945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:29:52 has no hits.
BS13217.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:43 Download gff for
BS13217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14569-RA | 33..614 | 23..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:27 Download gff for
BS13217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14569-RA | 36..617 | 23..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:43 Download gff for
BS13217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14569-RA | 33..614 | 23..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:17 Download gff for
BS13217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14569-RA | 36..617 | 23..604 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:17 Download gff for
BS13217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21730934..21731515 | 23..604 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:27 Download gff for
BS13217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21724034..21724615 | 23..604 | 100 | | Minus |
BS13217.5prime Sequence
618 bp (618 high quality bases) assembled on 2006-10-13
> BS13217.5prime
GAAGTTATCACTCGACATGTTTAAACCGACTGGCGCACCAATTGCTATTC
TTGTCCTGAGCCTGTTGGCGCTGAGCTCCGCGGAGCCGATCCGCCGGAGG
TTCTTGGCGCGCCAAGTGGAGGCTATACCCAGTCCTTCGCCCACCGGATA
TCCGGAGGCGGGCATCACCCCGAGTGTTCCCTTCGATTTACCCAGTTCGA
CTGTCAAGCCGGAGAACACTTATCTGCCGCCTGATAACACCTATGGACCT
CCGGACAACACATACGGGCCACCAGATAACACTTATGGACCTCCAGAGAC
CGACTCCGTGCCGGCTATTGCTCCCGAGGCTGAGCCGCTACCAGAGAATC
CCATCGAGACTGATGATATTCCAGAGACTGAGGAAGCATCGGTTGACGGT
GCCAAGCTGCAGCCCGCTGATGAGGACGCCGAGGAGGATGAACCGCAGCT
GGATGTTGCTGAGGATGGCACTGTGATCGTTGTAGCTAGCAGTCTTGACC
AGCCACAGTCCGTCCAGTCCGCCCGACTCTACCAGCGATTTCCGCAAGGA
CGGCGTTCCCAGAGGCCCGTTCCTCAGCGTCTAATCCTGCGTCGCAGTTG
GTAGAAGCTTTCTAGACC
BS13217.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:43:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14569-PA | 588 | CG14569-RA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14569-RA | 826 | CG14569-RA | 30..618 | 17..605 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21730933..21731521 | 605..17 | 2945 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:51:23 has no hits.
BS13217.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:34 Download gff for
BS13217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14569-PA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:37:12 Download gff for
BS13217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14569-RA | 30..627 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:09:15 Download gff for
BS13217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14569-RA | 30..627 | 17..617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:09:15 Download gff for
BS13217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21730924..21731521 | 17..617 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:37:12 Download gff for
BS13217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21724024..21724621 | 17..617 | 99 | | Minus |
BS13217.pep Sequence
Translation from 16 to 603
> BS13217.pep
MFKPTGAPIAILVLSLLALSSAEPIRRRFLARQVEAIPSPSPTGYPEAGI
TPSVPFDLPSSTVKPENTYLPPDNTYGPPDNTYGPPDNTYGPPETDSVPA
IAPEAEPLPENPIETDDIPETEEASVDGAKLQPADEDAEEDEPQLDVAED
GTVIVVASSLDQPQSVQSARLYQRFPQGRRSQRPVPQRLILRRSW*
BS13217.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14569-PA | 195 | CG14569-PA | 1..195 | 1..195 | 1017 | 100 | Plus |
CG14568-PA | 171 | CG14568-PA | 10..139 | 11..114 | 217 | 42.5 | Plus |
CG14570-PA | 228 | CG14570-PA | 5..127 | 4..111 | 183 | 36.1 | Plus |