Clone BS13218 Report

Search the DGRC for BS13218

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptVps16A-RA
Protein status:BS13218.pep: full length peptide match
Sequenced Size:2534

Clone Sequence Records

BS13218.complete Sequence

2534 bp assembled on 2009-12-07

GenBank Submission: KX801304

> BS13218.complete
GAAGTTATCAGTCGACATGCCTATCATGTACAACACGGGGGAGTGGTTCA
AGGTGCGACCGGACTACTACAGAAAAGTGGAACTGGCTACGCCTGATTGG
CCTCTGGACCTGGACTTGGAGTATATGTGGGTGGAAGTGGCTCCCTATGG
AGGACCACTGGCGGTCACTCGTGATCCGACCAAATTGGTGCCGGTAAAGG
GTAACGCTAGACCCATGATTCGCATCTTTGATACCACCGGCAGGGAAATG
GGTCACATATTGTGGAACCATGGCAAACTTATTGCCATGGGCTGGTCAGA
CATGGAGGAGCTTATCTGCATCCAGGAGAACGCCACCGTCTTTGTCTACG
ACATGTTTGGTCGGGAAAAGGAGTCCTACAGCATCGGCGATGAGGCCAGT
GTCACAAAGATTGTGGAGGGCAAGGTGTTCCAGTCCTCAGCTGGCACAGG
AGTGGCTGTAATGACCACATCCGGTCGGGTTTTCCTCAAGCAGAACAGCA
GCAAGACTGAAAGAAAGCTGCCGGATATTCCCAATTCCAGCATGAACTGT
TCCTGCTGGGAGATCGTAACCGAGGGACGCAACAGCTACTGTCTGCTGGG
AAGGGATCGAGAGGTCATAAAGCTGTTTCCAGGCGAAACTGTGGGAACTA
TTACCGCCAATCTCTTTGAGAAACCGCACGAGCGAATCATAAAGATATCT
GTGTCGTACAACCATCAGCACTTGGCACTGTACACCAACACCGGTCTTCT
TTGGCTGGGCAGCGTAGATATGCGGCAAAAGTATTGTGAATTCGACACCG
GACGTAAAGATATGCCCCTCCAAATGGAGTGGATCATGAACTCTGACAAC
AGCGAGGCGGATGCGGTGGTCATTTCATATCCATCGTACCTCTTAATTGT
AAATCGTAACGCTGATCGCAGTGACTTTCCCTACGATCCGGTGATGTTTC
TTGTGGCTGAAATGGATGGCGTTCGCATTATTACTCAGAGTTCGCATGAA
ATAATACAGCGCCTGCCAAAATGCGTTGAGAACATATTTGCAGTGAATAG
CCAGGAACCGGCTAGCTATCTCTTTGAGGCACAGAAAAAGTTTGAGGAGA
AGTCCTACAAGTCGGATGAGTATCTCAGCATGTGTCGGGAAAAGATCGAT
CTGGCAGTGTCCGAATGTATTGAGGCGGCTTCATATGAGTTTTGTCCGGA
AACTCAAAAGAGCTTGCTTAGGACGGCCTATTTTGGAAAAGGCTTTATTC
GTAACCACAATCCAGATGAATATATGCGTATTATGCGAATACTGAGGGTT
CTTAACACCTTGCGGCATGAGCGAATTGCCATGCCCATCACCTTCAAACA
ATTCTCACATCTTAATACCGAGGTCATACTCAGCCGTTTGGTATTCCGCA
AACACTATGCCATTGCGATACAAGTGGCCAAGCATTTAAATCTGCCCGAA
TCGTGGATCTTGGAACACTGGGCTTACCATAAAGTGATGAATGATCCCAA
TGATACTGAAGTGGCGCGTAAGATAACTGAAAAGTTCAAGAATCCGTCGG
TCGAGGGAATTTCTTTCTGCAATATTGCGTCAAAGGCGCATCAAGCTGGA
CGAGATGACCTGGCCATTAAGCTGCTAGAGCTCGAGTCTCGTGCTTCGCT
TCACGTACCACTACTTCTGAAGATGCGCAAGTTTGATCGGGCGGTGGGCA
GTGCCACACAGTCCGGCGATACAGAGTTGATCACCCAAGTTCTCTTGGAG
ATGAAAATGCACATGATGCTGTCCAATTTGCACATGACTATTAGGGACCA
TCCACTGGCTCTAAACATATACAAAAAGATAATGCGGGAGTCCAACAGAG
CTGGACTCTATGGGATTTACAACACCGAAGACGACCAAAAGGCCATCGCT
GAGTATCACTTCCAGAATGCCATTGAAACTGAAGGATTGGAGTCGAATCT
TTCGATGATTGGAAACGCCTATGCCCAGGGCCGTTGCACATTGGAAGCGG
AGCTTTGTGCGGATACCAGCCGATTGATTAAGCTGCAAAAGACTCTAAGC
ACCAAGTATAATGTCAGCTTAAATGGCTTGTCAATACATGAGACCATTCA
AGAATTACTGCTGATCGGCGAATTGAAAGAGGCAGAGCGAATCAGAAGCG
AATTTAAAGTGCCCGATCGTCGGTTCTGGTGGCTACGAATCCTCACACTT
TCTAGTCAACACAAGTGGGAGGAGTTGGAAAAGTTAGCTAAAAGTAAAAA
GAGCCCCATTGGCTACGATCCTTTTGTTGAGGTCTGCTTAAAACAGGACA
ATGTAATGGAGGCCCGAAAGTATATACCAAGGTGTCGGGACAATCGCCGG
GTCGTCTGGTATATGCGAGCAAACCTATTTAACGAAGCCATAGATTCCGC
CTTCGAGCAGCGTGATGTGCACAGTCTCTTTGAGTTGCAAAAGAACCAGG
CGATCGTTAACAATGGCACACTGTTGAGCAAAGTTTGCGATTGCATTGCC
ATGCTGGAGGGAAAGTAGAAGCTTTCTAGACCAT

BS13218.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
Vps16A-RA 2502 CG8454-PA 1..2502 17..2518 12510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
Vps16A-RA 2741 CG8454-RA 95..2605 8..2518 12525 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9267810..9268498 534..1222 3445 100 Plus
3R 32079331 3R 9269294..9269883 1784..2373 2950 100 Plus
3R 32079331 3R 9268942..9269225 1500..1783 1420 100 Plus
3R 32079331 3R 9267488..9267759 262..533 1360 100 Plus
3R 32079331 3R 9267243..9267436 69..262 970 100 Plus
3R 32079331 3R 9268737..9268889 1351..1503 750 99.3 Plus
3R 32079331 3R 9269944..9270088 2374..2518 725 100 Plus
3R 32079331 3R 9268556..9268684 1222..1350 645 100 Plus
3R 32079331 3R 9267113..9267177 8..72 295 96.9 Plus
Blast to na_te.dros performed on 2014-11-28 02:11:07 has no hits.

BS13218.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:39 Download gff for BS13218.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16A-RA 91..2592 17..2518 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:05 Download gff for BS13218.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16A-RA 104..2605 17..2518 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:02 Download gff for BS13218.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16A-RA 91..2592 17..2518 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:48 Download gff for BS13218.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16A-RA 104..2605 17..2518 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:48 Download gff for BS13218.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9267247..9267436 73..262 100 -> Plus
3R 9267489..9267759 263..533 100 -> Plus
3R 9267122..9267177 17..72 100 -> Plus
3R 9267810..9268498 534..1222 100 -> Plus
3R 9268557..9268684 1223..1350 100 -> Plus
3R 9268737..9268885 1351..1499 100 -> Plus
3R 9268942..9269225 1500..1783 100 -> Plus
3R 9269294..9269883 1784..2373 100 -> Plus
3R 9269944..9270088 2374..2518 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:05 Download gff for BS13218.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5092844..5092899 17..72 100 -> Plus
arm_3R 5092969..5093158 73..262 100 -> Plus
arm_3R 5093211..5093481 263..533 100 -> Plus
arm_3R 5093532..5094220 534..1222 100 -> Plus
arm_3R 5094279..5094406 1223..1350 100 -> Plus
arm_3R 5094459..5094607 1351..1499 100 -> Plus
arm_3R 5094664..5094947 1500..1783 100 -> Plus
arm_3R 5095016..5095605 1784..2373 100 -> Plus
arm_3R 5095666..5095810 2374..2518 100   Plus

BS13218.3prime Sequence

746 bp (652 high quality bases) assembled on 2006-10-13

> BS13218.3prime
ATGGTCTAGAAAGCTTCTACTTTCCCTCCAGCATGGCAATGCAATCGCAA
ACTTTGCTCAACAGTGTGCCATTGTTAACGATCGCCTGGTTCTTTTGCAA
CTCAAAGAGACTGTGCACATCACGCTGCTCGAAGGCGGAATCTATGGCTT
CGTTAAATAGGTTTGCTCGCATATACCAAACGACCCGGCGATTGTCCCGA
CACCTTGGTATATACTTTCGGGCCTCCATTACATTGTCCTGTTTTAAGCA
GACCTCAACAAAAGGATCGTAGCCAATGGGGCTCTTTTTACTTTTAGCTA
ACTTTTCCAACTCCTCCCACTTGTGTTGACTAGAAAGTGTGAGGATTCGT
AGCCACCAGAACCGACGATCGGGCACTTTAAATTCGCTTCTGATTCGCTC
TGCCTCTTTCAATTCGCCGATCAGCAGTAATTCTTGAATGGTCTCATGTA
TTGACAAGCCATTTAAGCTGACATTATACTTGGTGCTTAGAGTCTTTTGC
AGCTTAATCAATCGGCTGGTATCCGCACAAAGCTCCGCTTCCAATGTGCA
ACGGCCCTGGGCATAGGCGTTTCCAATCATCGAAAGATTCGACTCCAATC
CTTCAGTTTCAATGGCATTCTGGAAGTGATACTCAGCGATGGCCTTTTGG
TCGTCTTCGGTGTTGTAAATCCCATAGAGTCCAGCTCTGTTGGACTCCCG
CATTTATCTTTTTGTATATGTTTAGAGCCAGTGGATGGTCCCTAAT

BS13218.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8454-PA 2502 Vps16A-RA 1774..2502 746..17 3585 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
Vps16A-RA 2741 CG8454-RA 1877..2605 746..17 3610 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9269300..9269883 746..162 2860 99.7 Minus
3R 32079331 3R 9269944..9270088 161..17 725 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:49:14 has no hits.

BS13218.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:35 Download gff for BS13218.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8454-PA 1774..2502 17..746 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:49:11 Download gff for BS13218.3prime
Subject Subject Range Query Range Percent Splice Strand
Vps16A-RA 1877..2605 17..746 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:29:32 Download gff for BS13218.3prime
Subject Subject Range Query Range Percent Splice Strand
Vps16A-RA 1877..2605 17..746 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:29:32 Download gff for BS13218.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9269300..9269883 162..746 99 -> Minus
3R 9269944..9270088 17..161 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:49:11 Download gff for BS13218.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5095022..5095605 162..746 99 -> Minus
arm_3R 5095666..5095810 17..161 100   Minus

BS13218.5prime Sequence

713 bp (681 high quality bases) assembled on 2006-10-13

> BS13218.5prime
GAAGTTATCAGTCGACATGCCTATCATGTACAACACGGGGGAGTGGTTCA
AGGTGCGACCGGACTACTACAGAAAAGTGGAACTGGCTACGCCTGATTGG
CCTCTGGACCTGGACTTGGAGTATATGTGGGTGGAAGTGGCTCCCTATGG
AGGACCACTGGCGGTCACTCGTGATCCGACCAAATTGGTGCCGGTAAAGG
GTAACGCTAGACCCATGATTCGCATCTTTGATACCACCGGCAGGGAAATG
GGTCACATATTGTGGAACCATGGCAAACTTATTGCCATGGGCTGGTCAGA
CATGGAGGAGCTTATCTGCATCCAGGAGAACGCCACCGTCTTTGTCTACG
ACATGTTTGGTCGGGAAAAGGAGTCCTACAGCATCGGCGATGAGGCCAGT
GTCACAAAGATTGTGGAGGGCAAGGTGTTCCAGTCCTCAGCTGGCACAGG
AGTGGCTGTAATGACCACATCCGGTCGGGTTTTCCTCAAGCAGAACAGCA
GCAAGACTGAAAGAAAGCTGCCGGATATTCCCAATTCCAGCATGAACTGT
TCCTGCTGGGAGATCGTAACCGAGGGACGCAACAGCTACTGTCTGCTGGG
AAGGGATCGAGAGGTCATAAAGCTGTTTCCAGGCGAAACTGTGGGAACTA
TTACCGCCAATCTCTTTGAGAAACCGCACGAGCGAATCATAAAGATATCT
GTGTCGTACAACC

BS13218.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8454-PA 2502 Vps16A-RA 1..697 17..713 3485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
Vps16A-RA 2741 CG8454-RA 95..800 8..713 3500 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9267488..9267759 262..533 1360 100 Plus
3R 32079331 3R 9267243..9267436 69..262 970 100 Plus
3R 32079331 3R 9267810..9267989 534..713 900 100 Plus
3R 32079331 3R 9267113..9267177 8..72 295 96.9 Plus
Blast to na_te.dros performed on 2015-02-11 18:26:39 has no hits.

BS13218.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:35 Download gff for BS13218.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8454-PA 1..697 17..713 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:19:32 Download gff for BS13218.5prime
Subject Subject Range Query Range Percent Splice Strand
Vps16A-RA 89..800 2..713 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:59:52 Download gff for BS13218.5prime
Subject Subject Range Query Range Percent Splice Strand
Vps16A-RA 89..800 2..713 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:59:52 Download gff for BS13218.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9267107..9267177 2..72 93 -> Plus
3R 9267247..9267436 73..262 100 -> Plus
3R 9267489..9267759 263..533 100 -> Plus
3R 9267810..9267989 534..713 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:19:32 Download gff for BS13218.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5092829..5092899 2..72 93 -> Plus
arm_3R 5092969..5093158 73..262 100 -> Plus
arm_3R 5093211..5093481 263..533 100 -> Plus
arm_3R 5093532..5093711 534..713 100   Plus

BS13218.pep Sequence

Translation from 16 to 2517

> BS13218.pep
MPIMYNTGEWFKVRPDYYRKVELATPDWPLDLDLEYMWVEVAPYGGPLAV
TRDPTKLVPVKGNARPMIRIFDTTGREMGHILWNHGKLIAMGWSDMEELI
CIQENATVFVYDMFGREKESYSIGDEASVTKIVEGKVFQSSAGTGVAVMT
TSGRVFLKQNSSKTERKLPDIPNSSMNCSCWEIVTEGRNSYCLLGRDREV
IKLFPGETVGTITANLFEKPHERIIKISVSYNHQHLALYTNTGLLWLGSV
DMRQKYCEFDTGRKDMPLQMEWIMNSDNSEADAVVISYPSYLLIVNRNAD
RSDFPYDPVMFLVAEMDGVRIITQSSHEIIQRLPKCVENIFAVNSQEPAS
YLFEAQKKFEEKSYKSDEYLSMCREKIDLAVSECIEAASYEFCPETQKSL
LRTAYFGKGFIRNHNPDEYMRIMRILRVLNTLRHERIAMPITFKQFSHLN
TEVILSRLVFRKHYAIAIQVAKHLNLPESWILEHWAYHKVMNDPNDTEVA
RKITEKFKNPSVEGISFCNIASKAHQAGRDDLAIKLLELESRASLHVPLL
LKMRKFDRAVGSATQSGDTELITQVLLEMKMHMMLSNLHMTIRDHPLALN
IYKKIMRESNRAGLYGIYNTEDDQKAIAEYHFQNAIETEGLESNLSMIGN
AYAQGRCTLEAELCADTSRLIKLQKTLSTKYNVSLNGLSIHETIQELLLI
GELKEAERIRSEFKVPDRRFWWLRILTLSSQHKWEELEKLAKSKKSPIGY
DPFVEVCLKQDNVMEARKYIPRCRDNRRVVWYMRANLFNEAIDSAFEQRD
VHSLFELQKNQAIVNNGTLLSKVCDCIAMLEGK*

BS13218.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
Vps16A-PA 833 CG8454-PA 1..833 1..833 4357 100 Plus