Clone Sequence Records
BS13218.complete Sequence
2534 bp assembled on 2009-12-07
GenBank Submission: KX801304
> BS13218.complete
GAAGTTATCAGTCGACATGCCTATCATGTACAACACGGGGGAGTGGTTCA
AGGTGCGACCGGACTACTACAGAAAAGTGGAACTGGCTACGCCTGATTGG
CCTCTGGACCTGGACTTGGAGTATATGTGGGTGGAAGTGGCTCCCTATGG
AGGACCACTGGCGGTCACTCGTGATCCGACCAAATTGGTGCCGGTAAAGG
GTAACGCTAGACCCATGATTCGCATCTTTGATACCACCGGCAGGGAAATG
GGTCACATATTGTGGAACCATGGCAAACTTATTGCCATGGGCTGGTCAGA
CATGGAGGAGCTTATCTGCATCCAGGAGAACGCCACCGTCTTTGTCTACG
ACATGTTTGGTCGGGAAAAGGAGTCCTACAGCATCGGCGATGAGGCCAGT
GTCACAAAGATTGTGGAGGGCAAGGTGTTCCAGTCCTCAGCTGGCACAGG
AGTGGCTGTAATGACCACATCCGGTCGGGTTTTCCTCAAGCAGAACAGCA
GCAAGACTGAAAGAAAGCTGCCGGATATTCCCAATTCCAGCATGAACTGT
TCCTGCTGGGAGATCGTAACCGAGGGACGCAACAGCTACTGTCTGCTGGG
AAGGGATCGAGAGGTCATAAAGCTGTTTCCAGGCGAAACTGTGGGAACTA
TTACCGCCAATCTCTTTGAGAAACCGCACGAGCGAATCATAAAGATATCT
GTGTCGTACAACCATCAGCACTTGGCACTGTACACCAACACCGGTCTTCT
TTGGCTGGGCAGCGTAGATATGCGGCAAAAGTATTGTGAATTCGACACCG
GACGTAAAGATATGCCCCTCCAAATGGAGTGGATCATGAACTCTGACAAC
AGCGAGGCGGATGCGGTGGTCATTTCATATCCATCGTACCTCTTAATTGT
AAATCGTAACGCTGATCGCAGTGACTTTCCCTACGATCCGGTGATGTTTC
TTGTGGCTGAAATGGATGGCGTTCGCATTATTACTCAGAGTTCGCATGAA
ATAATACAGCGCCTGCCAAAATGCGTTGAGAACATATTTGCAGTGAATAG
CCAGGAACCGGCTAGCTATCTCTTTGAGGCACAGAAAAAGTTTGAGGAGA
AGTCCTACAAGTCGGATGAGTATCTCAGCATGTGTCGGGAAAAGATCGAT
CTGGCAGTGTCCGAATGTATTGAGGCGGCTTCATATGAGTTTTGTCCGGA
AACTCAAAAGAGCTTGCTTAGGACGGCCTATTTTGGAAAAGGCTTTATTC
GTAACCACAATCCAGATGAATATATGCGTATTATGCGAATACTGAGGGTT
CTTAACACCTTGCGGCATGAGCGAATTGCCATGCCCATCACCTTCAAACA
ATTCTCACATCTTAATACCGAGGTCATACTCAGCCGTTTGGTATTCCGCA
AACACTATGCCATTGCGATACAAGTGGCCAAGCATTTAAATCTGCCCGAA
TCGTGGATCTTGGAACACTGGGCTTACCATAAAGTGATGAATGATCCCAA
TGATACTGAAGTGGCGCGTAAGATAACTGAAAAGTTCAAGAATCCGTCGG
TCGAGGGAATTTCTTTCTGCAATATTGCGTCAAAGGCGCATCAAGCTGGA
CGAGATGACCTGGCCATTAAGCTGCTAGAGCTCGAGTCTCGTGCTTCGCT
TCACGTACCACTACTTCTGAAGATGCGCAAGTTTGATCGGGCGGTGGGCA
GTGCCACACAGTCCGGCGATACAGAGTTGATCACCCAAGTTCTCTTGGAG
ATGAAAATGCACATGATGCTGTCCAATTTGCACATGACTATTAGGGACCA
TCCACTGGCTCTAAACATATACAAAAAGATAATGCGGGAGTCCAACAGAG
CTGGACTCTATGGGATTTACAACACCGAAGACGACCAAAAGGCCATCGCT
GAGTATCACTTCCAGAATGCCATTGAAACTGAAGGATTGGAGTCGAATCT
TTCGATGATTGGAAACGCCTATGCCCAGGGCCGTTGCACATTGGAAGCGG
AGCTTTGTGCGGATACCAGCCGATTGATTAAGCTGCAAAAGACTCTAAGC
ACCAAGTATAATGTCAGCTTAAATGGCTTGTCAATACATGAGACCATTCA
AGAATTACTGCTGATCGGCGAATTGAAAGAGGCAGAGCGAATCAGAAGCG
AATTTAAAGTGCCCGATCGTCGGTTCTGGTGGCTACGAATCCTCACACTT
TCTAGTCAACACAAGTGGGAGGAGTTGGAAAAGTTAGCTAAAAGTAAAAA
GAGCCCCATTGGCTACGATCCTTTTGTTGAGGTCTGCTTAAAACAGGACA
ATGTAATGGAGGCCCGAAAGTATATACCAAGGTGTCGGGACAATCGCCGG
GTCGTCTGGTATATGCGAGCAAACCTATTTAACGAAGCCATAGATTCCGC
CTTCGAGCAGCGTGATGTGCACAGTCTCTTTGAGTTGCAAAAGAACCAGG
CGATCGTTAACAATGGCACACTGTTGAGCAAAGTTTGCGATTGCATTGCC
ATGCTGGAGGGAAAGTAGAAGCTTTCTAGACCAT
BS13218.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:11:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps16A-RA | 2502 | CG8454-PA | 1..2502 | 17..2518 | 12510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps16A-RA | 2741 | CG8454-RA | 95..2605 | 8..2518 | 12525 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9267810..9268498 | 534..1222 | 3445 | 100 | Plus |
3R | 32079331 | 3R | 9269294..9269883 | 1784..2373 | 2950 | 100 | Plus |
3R | 32079331 | 3R | 9268942..9269225 | 1500..1783 | 1420 | 100 | Plus |
3R | 32079331 | 3R | 9267488..9267759 | 262..533 | 1360 | 100 | Plus |
3R | 32079331 | 3R | 9267243..9267436 | 69..262 | 970 | 100 | Plus |
3R | 32079331 | 3R | 9268737..9268889 | 1351..1503 | 750 | 99.3 | Plus |
3R | 32079331 | 3R | 9269944..9270088 | 2374..2518 | 725 | 100 | Plus |
3R | 32079331 | 3R | 9268556..9268684 | 1222..1350 | 645 | 100 | Plus |
3R | 32079331 | 3R | 9267113..9267177 | 8..72 | 295 | 96.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:11:07 has no hits.
BS13218.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:39 Download gff for
BS13218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps16A-RA | 91..2592 | 17..2518 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:05 Download gff for
BS13218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps16A-RA | 104..2605 | 17..2518 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:02 Download gff for
BS13218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps16A-RA | 91..2592 | 17..2518 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:48 Download gff for
BS13218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps16A-RA | 104..2605 | 17..2518 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:48 Download gff for
BS13218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9267247..9267436 | 73..262 | 100 | -> | Plus |
3R | 9267489..9267759 | 263..533 | 100 | -> | Plus |
3R | 9267122..9267177 | 17..72 | 100 | -> | Plus |
3R | 9267810..9268498 | 534..1222 | 100 | -> | Plus |
3R | 9268557..9268684 | 1223..1350 | 100 | -> | Plus |
3R | 9268737..9268885 | 1351..1499 | 100 | -> | Plus |
3R | 9268942..9269225 | 1500..1783 | 100 | -> | Plus |
3R | 9269294..9269883 | 1784..2373 | 100 | -> | Plus |
3R | 9269944..9270088 | 2374..2518 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:05 Download gff for
BS13218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5092844..5092899 | 17..72 | 100 | -> | Plus |
arm_3R | 5092969..5093158 | 73..262 | 100 | -> | Plus |
arm_3R | 5093211..5093481 | 263..533 | 100 | -> | Plus |
arm_3R | 5093532..5094220 | 534..1222 | 100 | -> | Plus |
arm_3R | 5094279..5094406 | 1223..1350 | 100 | -> | Plus |
arm_3R | 5094459..5094607 | 1351..1499 | 100 | -> | Plus |
arm_3R | 5094664..5094947 | 1500..1783 | 100 | -> | Plus |
arm_3R | 5095016..5095605 | 1784..2373 | 100 | -> | Plus |
arm_3R | 5095666..5095810 | 2374..2518 | 100 | | Plus |
BS13218.3prime Sequence
746 bp (652 high quality bases) assembled on 2006-10-13
> BS13218.3prime
ATGGTCTAGAAAGCTTCTACTTTCCCTCCAGCATGGCAATGCAATCGCAA
ACTTTGCTCAACAGTGTGCCATTGTTAACGATCGCCTGGTTCTTTTGCAA
CTCAAAGAGACTGTGCACATCACGCTGCTCGAAGGCGGAATCTATGGCTT
CGTTAAATAGGTTTGCTCGCATATACCAAACGACCCGGCGATTGTCCCGA
CACCTTGGTATATACTTTCGGGCCTCCATTACATTGTCCTGTTTTAAGCA
GACCTCAACAAAAGGATCGTAGCCAATGGGGCTCTTTTTACTTTTAGCTA
ACTTTTCCAACTCCTCCCACTTGTGTTGACTAGAAAGTGTGAGGATTCGT
AGCCACCAGAACCGACGATCGGGCACTTTAAATTCGCTTCTGATTCGCTC
TGCCTCTTTCAATTCGCCGATCAGCAGTAATTCTTGAATGGTCTCATGTA
TTGACAAGCCATTTAAGCTGACATTATACTTGGTGCTTAGAGTCTTTTGC
AGCTTAATCAATCGGCTGGTATCCGCACAAAGCTCCGCTTCCAATGTGCA
ACGGCCCTGGGCATAGGCGTTTCCAATCATCGAAAGATTCGACTCCAATC
CTTCAGTTTCAATGGCATTCTGGAAGTGATACTCAGCGATGGCCTTTTGG
TCGTCTTCGGTGTTGTAAATCCCATAGAGTCCAGCTCTGTTGGACTCCCG
CATTTATCTTTTTGTATATGTTTAGAGCCAGTGGATGGTCCCTAAT
BS13218.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:43:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8454-PA | 2502 | Vps16A-RA | 1774..2502 | 746..17 | 3585 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:49:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps16A-RA | 2741 | CG8454-RA | 1877..2605 | 746..17 | 3610 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9269300..9269883 | 746..162 | 2860 | 99.7 | Minus |
3R | 32079331 | 3R | 9269944..9270088 | 161..17 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:49:14 has no hits.
BS13218.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:35 Download gff for
BS13218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8454-PA | 1774..2502 | 17..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:49:11 Download gff for
BS13218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps16A-RA | 1877..2605 | 17..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:29:32 Download gff for
BS13218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps16A-RA | 1877..2605 | 17..746 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:29:32 Download gff for
BS13218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9269300..9269883 | 162..746 | 99 | -> | Minus |
3R | 9269944..9270088 | 17..161 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:49:11 Download gff for
BS13218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5095022..5095605 | 162..746 | 99 | -> | Minus |
arm_3R | 5095666..5095810 | 17..161 | 100 | | Minus |
BS13218.5prime Sequence
713 bp (681 high quality bases) assembled on 2006-10-13
> BS13218.5prime
GAAGTTATCAGTCGACATGCCTATCATGTACAACACGGGGGAGTGGTTCA
AGGTGCGACCGGACTACTACAGAAAAGTGGAACTGGCTACGCCTGATTGG
CCTCTGGACCTGGACTTGGAGTATATGTGGGTGGAAGTGGCTCCCTATGG
AGGACCACTGGCGGTCACTCGTGATCCGACCAAATTGGTGCCGGTAAAGG
GTAACGCTAGACCCATGATTCGCATCTTTGATACCACCGGCAGGGAAATG
GGTCACATATTGTGGAACCATGGCAAACTTATTGCCATGGGCTGGTCAGA
CATGGAGGAGCTTATCTGCATCCAGGAGAACGCCACCGTCTTTGTCTACG
ACATGTTTGGTCGGGAAAAGGAGTCCTACAGCATCGGCGATGAGGCCAGT
GTCACAAAGATTGTGGAGGGCAAGGTGTTCCAGTCCTCAGCTGGCACAGG
AGTGGCTGTAATGACCACATCCGGTCGGGTTTTCCTCAAGCAGAACAGCA
GCAAGACTGAAAGAAAGCTGCCGGATATTCCCAATTCCAGCATGAACTGT
TCCTGCTGGGAGATCGTAACCGAGGGACGCAACAGCTACTGTCTGCTGGG
AAGGGATCGAGAGGTCATAAAGCTGTTTCCAGGCGAAACTGTGGGAACTA
TTACCGCCAATCTCTTTGAGAAACCGCACGAGCGAATCATAAAGATATCT
GTGTCGTACAACC
BS13218.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:43:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8454-PA | 2502 | Vps16A-RA | 1..697 | 17..713 | 3485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps16A-RA | 2741 | CG8454-RA | 95..800 | 8..713 | 3500 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9267488..9267759 | 262..533 | 1360 | 100 | Plus |
3R | 32079331 | 3R | 9267243..9267436 | 69..262 | 970 | 100 | Plus |
3R | 32079331 | 3R | 9267810..9267989 | 534..713 | 900 | 100 | Plus |
3R | 32079331 | 3R | 9267113..9267177 | 8..72 | 295 | 96.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:26:39 has no hits.
BS13218.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:35 Download gff for
BS13218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8454-PA | 1..697 | 17..713 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:19:32 Download gff for
BS13218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps16A-RA | 89..800 | 2..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:59:52 Download gff for
BS13218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps16A-RA | 89..800 | 2..713 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:59:52 Download gff for
BS13218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9267107..9267177 | 2..72 | 93 | -> | Plus |
3R | 9267247..9267436 | 73..262 | 100 | -> | Plus |
3R | 9267489..9267759 | 263..533 | 100 | -> | Plus |
3R | 9267810..9267989 | 534..713 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:19:32 Download gff for
BS13218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5092829..5092899 | 2..72 | 93 | -> | Plus |
arm_3R | 5092969..5093158 | 73..262 | 100 | -> | Plus |
arm_3R | 5093211..5093481 | 263..533 | 100 | -> | Plus |
arm_3R | 5093532..5093711 | 534..713 | 100 | | Plus |
BS13218.pep Sequence
Translation from 16 to 2517
> BS13218.pep
MPIMYNTGEWFKVRPDYYRKVELATPDWPLDLDLEYMWVEVAPYGGPLAV
TRDPTKLVPVKGNARPMIRIFDTTGREMGHILWNHGKLIAMGWSDMEELI
CIQENATVFVYDMFGREKESYSIGDEASVTKIVEGKVFQSSAGTGVAVMT
TSGRVFLKQNSSKTERKLPDIPNSSMNCSCWEIVTEGRNSYCLLGRDREV
IKLFPGETVGTITANLFEKPHERIIKISVSYNHQHLALYTNTGLLWLGSV
DMRQKYCEFDTGRKDMPLQMEWIMNSDNSEADAVVISYPSYLLIVNRNAD
RSDFPYDPVMFLVAEMDGVRIITQSSHEIIQRLPKCVENIFAVNSQEPAS
YLFEAQKKFEEKSYKSDEYLSMCREKIDLAVSECIEAASYEFCPETQKSL
LRTAYFGKGFIRNHNPDEYMRIMRILRVLNTLRHERIAMPITFKQFSHLN
TEVILSRLVFRKHYAIAIQVAKHLNLPESWILEHWAYHKVMNDPNDTEVA
RKITEKFKNPSVEGISFCNIASKAHQAGRDDLAIKLLELESRASLHVPLL
LKMRKFDRAVGSATQSGDTELITQVLLEMKMHMMLSNLHMTIRDHPLALN
IYKKIMRESNRAGLYGIYNTEDDQKAIAEYHFQNAIETEGLESNLSMIGN
AYAQGRCTLEAELCADTSRLIKLQKTLSTKYNVSLNGLSIHETIQELLLI
GELKEAERIRSEFKVPDRRFWWLRILTLSSQHKWEELEKLAKSKKSPIGY
DPFVEVCLKQDNVMEARKYIPRCRDNRRVVWYMRANLFNEAIDSAFEQRD
VHSLFELQKNQAIVNNGTLLSKVCDCIAMLEGK*
BS13218.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps16A-PA | 833 | CG8454-PA | 1..833 | 1..833 | 4357 | 100 | Plus |