Clone Sequence Records
BS13220.3prime Sequence
611 bp (609 high quality bases) assembled on 2006-10-13
> BS13220.3prime
ATGGTCTAGAAAGCTTCTAGGCGTTGACCTTGTCCTCGTCACCCGTAGTG
TCGTCCTCCTCCACCTCGCTGTTGTCCTCTTCGCAGATCTCCTTCAGGAC
CTCCACCAAATTCTTGGCCTCGTCCAGTTCCTGGCGCATAGTGTCCATCT
CCTCCTCAAGCCCCTCGATGCGCTCGTGCAGATGGCGGTTTTCGGTGAGC
GAGTCCTCCAGCGCCAGTCGCCGCTGCTCGGCCAGCAGCTTGTAGTAGTT
CTCGCCGGGTTCGGCTGTGCTAGTGAGATCCTCTGCCGTGATGGGCTTGT
CAGCATTGCCAAGCGGAACGGCCTCAGCATCAGTCTGGGTATCCGCATCC
TTTGTGGAAATCGCGGGCGCCGTGTCCACGCATTTGCGCTTGCCGTACTT
GGGCGCGACTTGGACGCCGGCCTTCAGACGACTCAGCTGATCCACGATGG
AGGCGCGCCCTGAACCAGTGAGGTTCTCCTTATCGTTTACGTTGCCCTGC
AAGGGTTTCAGGGTCTGTCTCTGCTGCTTCAGGTGCTCCTTCTGCTCGGC
CTCTGTCTCGACTTGGATGTAGACCCTGGCAGCGCTCGAAGACATTGTCG
ACTGATAACTT
BS13220.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3183-PA | 579 | geminin-RA | 1..579 | 595..17 | 2895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| geminin-RB | 939 | CG3183-RB | 173..751 | 595..17 | 2895 | 100 | Minus |
| geminin-RA | 1061 | CG3183-RA | 295..873 | 595..17 | 2895 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6655651..6656229 | 17..595 | 2895 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:37:48 has no hits.
BS13220.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:36 Download gff for
BS13220.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3183-PA | 1..579 | 17..595 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:27:04 Download gff for
BS13220.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| geminin-RA | 217..803 | 12..600 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:20 Download gff for
BS13220.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| geminin-RA | 290..876 | 12..600 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:20 Download gff for
BS13220.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6655648..6656234 | 12..600 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:27:04 Download gff for
BS13220.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2543153..2543739 | 12..600 | 99 | | Plus |
BS13220.5prime Sequence
609 bp (609 high quality bases) assembled on 2006-10-13
> BS13220.5prime
GAAGTTATCAGTCGACATGTCTTCGAGCGCTGCCAGGGTCTACATCCAAG
TCGAGACAGAGGCCGAGCAGAAGGAGCACCTGAAGCAGCAGAGACAGACC
CTGAAACCCTTGCAGGGCAACGTAAACGATAAGGAGAACCTCACTGGTTC
AGGGCGCGCCTCCATCGTGGATCAGCTGAGTCGTCTGAAGGCCGGCGTCC
AAGTCGCGCCCAAGTACGGCAAGCGCAAATGCGTGGACACGGCGCCCGCG
ATTTCCACAAAGGATGCGGATACCCAGACTGATGCTGAGGCCGTTCCGCT
TGGCAATGCTGACAAGCCCATCACGGCAGAGGATCTCACTAGCACAGCCG
AACCCGGCGAGAACTACTACAAGCTGCTGGCCGAGCAGCGGCGACTGGCG
CTGGAGGACTCGCTCACCGAAAACCGCCATCTGCACGAGCGCATCGAGGG
GCTTGAGGAGGAGATGGACACTATGCGCCAGGAACTGGACGAGGCCAAGA
ATTTGGTGGAGGTCCTGAAGGAGATCTGCGAAGAGGACAACAGCGAGGTG
GAGGAGGACGACACTACGGGTGACGAGGACAAGGTCAACGCCTAGAAGCT
TTCTAGACC
BS13220.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3183-PA | 579 | geminin-RA | 1..579 | 17..595 | 2895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| geminin-RB | 939 | CG3183-RB | 173..751 | 17..595 | 2895 | 100 | Plus |
| geminin-RA | 1061 | CG3183-RA | 295..873 | 17..595 | 2895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6655651..6656229 | 595..17 | 2895 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:09:50 has no hits.
BS13220.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:37 Download gff for
BS13220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3183-PA | 1..579 | 17..595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:11 Download gff for
BS13220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| geminin-RA | 222..803 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:26:57 Download gff for
BS13220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| geminin-RA | 295..876 | 17..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:26:57 Download gff for
BS13220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6655648..6656229 | 17..600 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:11 Download gff for
BS13220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2543153..2543734 | 17..600 | 99 | | Minus |
BS13220.complete Sequence
611 bp assembled on 2006-11-01
GenBank Submission: FJ637393
> BS13220.complete
GAAGTTATCAGTCGACATGTCTTCGAGCGCTGCCAGGGTCTACATCCAAG
TCGAGACAGAGGCCGAGCAGAAGGAGCACCTGAAGCAGCAGAGACAGACC
CTGAAACCCTTGCAGGGCAACGTAAACGATAAGGAGAACCTCACTGGTTC
AGGGCGCGCCTCCATCGTGGATCAGCTGAGTCGTCTGAAGGCCGGCGTCC
AAGTCGCGCCCAAGTACGGCAAGCGCAAATGCGTGGACACGGCGCCCGCG
ATTTCCACAAAGGATGCGGATACCCAGACTGATGCTGAGGCCGTTCCGCT
TGGCAATGCTGACAAGCCCATCACGGCAGAGGATCTCACTAGCACAGCCG
AACCCGGCGAGAACTACTACAAGCTGCTGGCCGAGCAGCGGCGACTGGCG
CTGGAGGACTCGCTCACCGAAAACCGCCATCTGCACGAGCGCATCGAGGG
GCTTGAGGAGGAGATGGACACTATGCGCCAGGAACTGGACGAGGCCAAGA
ATTTGGTGGAGGTCCTGAAGGAGATCTGCGAAGAGGACAACAGCGAGGTG
GAGGAGGACGACACTACGGGTGACGAGGACAAGGTCAACGCCTAGAAGCT
TTCTAGACCAT
BS13220.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:55:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| geminin-RB | 579 | CG3183-PB | 1..579 | 17..595 | 2895 | 100 | Plus |
| geminin-RA | 579 | CG3183-PA | 1..579 | 17..595 | 2895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:55:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| geminin-RB | 939 | CG3183-RB | 173..751 | 17..595 | 2895 | 100 | Plus |
| geminin-RA | 1061 | CG3183-RA | 295..873 | 17..595 | 2895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:55:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6655651..6656229 | 595..17 | 2895 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:55:22 has no hits.
BS13220.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:08 Download gff for
BS13220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| geminin-RA | 1..579 | 17..595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:59 Download gff for
BS13220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| geminin-RA | 222..803 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:35 Download gff for
BS13220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| geminin-RA | 222..800 | 17..595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:08 Download gff for
BS13220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| geminin-RA | 222..803 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:52 Download gff for
BS13220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| geminin-RA | 295..873 | 17..595 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:52 Download gff for
BS13220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6655651..6656229 | 17..595 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:35 Download gff for
BS13220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2543156..2543734 | 17..595 | 100 | | Minus |
BS13220.pep Sequence
Translation from 16 to 594
> BS13220.pep
MSSSAARVYIQVETEAEQKEHLKQQRQTLKPLQGNVNDKENLTGSGRASI
VDQLSRLKAGVQVAPKYGKRKCVDTAPAISTKDADTQTDAEAVPLGNADK
PITAEDLTSTAEPGENYYKLLAEQRRLALEDSLTENRHLHERIEGLEEEM
DTMRQELDEAKNLVEVLKEICEEDNSEVEEDDTTGDEDKVNA*
BS13220.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| geminin-PB | 192 | CG3183-PB | 1..192 | 1..192 | 967 | 100 | Plus |
| geminin-PA | 192 | CG3183-PA | 1..192 | 1..192 | 967 | 100 | Plus |
