Clone Sequence Records
BS13223.3prime Sequence
435 bp (435 high quality bases) assembled on 2006-10-13
> BS13223.3prime
ATGGTCTAGAAAGCTTCTATTGCTTGGCACCGCCAAAGAAGAACTTGTAG
AAGAGCGTGGCCACCAAGCACAGGACGAGGGGCACCAGCCACGACTTCAC
AGAACTCTCCTCGGTTTGCTGTTCCGTGCTCCAGGTCGGCTCCGACTTCT
GGGCCACGCTTGTCCTTTCGCTCTCCACCAGCTCACCGATTTTGTACTTC
TTCATCATGTCGCGGGCATCGTTGCTGTGGCCAACGTCCTCAAAGTTCTC
CGTGGCATCTTTGCCGGCCTGCTCGATGAGCACCTCTTCGCCACCGGGAT
GCTCGTTGAGGAAGGCGGTGACGTCGTAGATGTTGTTGTGTATGAGCAGC
CAGGTGTCCTTGTTCGTGTTGTGCTTGGCGACCTCGGCCCGCGTGAAAGT
CTTTGTTTCCTCGCTCGACATGTCGACTGATAACT
BS13223.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2140-PB | 405 | Cyt-b5-RB | 1..405 | 421..17 | 2025 | 100 | Minus |
CG2140-PA | 372 | Cyt-b5-RA | 88..372 | 301..17 | 1425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-RB | 830 | CG2140-RB | 105..510 | 422..17 | 2030 | 100 | Minus |
Cyt-b5-RA | 692 | CG2140-RA | 88..372 | 301..17 | 1425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7535330..7535616 | 303..17 | 1435 | 100 | Minus |
2R | 25286936 | 2R | 7533610..7533730 | 422..302 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:15:56 has no hits.
BS13223.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:39 Download gff for
BS13223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2140-PB | 1..405 | 17..421 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:05:04 Download gff for
BS13223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-RB | 100..513 | 14..431 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:34:31 Download gff for
BS13223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-RB | 100..513 | 14..431 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:34:31 Download gff for
BS13223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7533605..7533730 | 302..431 | 96 | -> | Minus |
2R | 7535332..7535619 | 14..301 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:05:04 Download gff for
BS13223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3421110..3421235 | 302..431 | 96 | -> | Minus |
arm_2R | 3422837..3423124 | 14..301 | 99 | | Minus |
BS13223.5prime Sequence
435 bp (435 high quality bases) assembled on 2006-10-13
> BS13223.5prime
GAAGTTATCAGTCGACATGTCGAGCGAGGAAACAAAGACTTTCACGCGGG
CCGAGGTCGCCAAGCACAACACGAACAAGGACACCTGGCTGCTCATACAC
AACAACATCTACGACGTCACCGCCTTCCTCAACGAGCATCCCGGTGGCGA
AGAGGTGCTCATCGAGCAGGCCGGCAAAGATGCCACGGAGAACTTTGAGG
ACGTTGGCCACAGCAACGATGCCCGCGACATGATGAAGAAGTACAAAATC
GGTGAGCTGGTGGAGAGCGAAAGGACAAGCGTGGCCCAGAAGTCGGAGCC
GACCTGGAGCACGGAACAGCAAACCGAGGAGAGTTCTGTGAAGTCGTGGC
TGGTGCCCCTCGTCCTGTGCTTGGTGGCCACGCTCTTCTACAAGTTCTTC
TTTGGCGGTGCCAAGCAATAGAAGCTTTCTAGACC
BS13223.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2140-PB | 405 | Cyt-b5-RB | 1..405 | 17..421 | 2025 | 100 | Plus |
CG2140-PA | 372 | Cyt-b5-RA | 88..372 | 137..421 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-RB | 830 | CG2140-RB | 105..510 | 16..421 | 2030 | 100 | Plus |
Cyt-b5-RA | 692 | CG2140-RA | 88..372 | 137..421 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7535330..7535616 | 135..421 | 1435 | 100 | Plus |
2R | 25286936 | 2R | 7533610..7533730 | 16..136 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:51:32 has no hits.
BS13223.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:39 Download gff for
BS13223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2140-PB | 1..405 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:15 Download gff for
BS13223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-RB | 100..513 | 7..424 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:03 Download gff for
BS13223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-RB | 100..513 | 7..424 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:03 Download gff for
BS13223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7533605..7533730 | 7..136 | 96 | -> | Plus |
2R | 7535332..7535619 | 137..424 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:15 Download gff for
BS13223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3422837..3423124 | 137..424 | 99 | | Plus |
arm_2R | 3421110..3421235 | 7..136 | 96 | -> | Plus |
BS13223.complete Sequence
437 bp assembled on 2006-11-01
GenBank Submission: FJ637394
> BS13223.complete
GAAGTTATCAGTCGACATGTCGAGCGAGGAAACAAAGACTTTCACGCGGG
CCGAGGTCGCCAAGCACAACACGAACAAGGACACCTGGCTGCTCATACAC
AACAACATCTACGACGTCACCGCCTTCCTCAACGAGCATCCCGGTGGCGA
AGAGGTGCTCATCGAGCAGGCCGGCAAAGATGCCACGGAGAACTTTGAGG
ACGTTGGCCACAGCAACGATGCCCGCGACATGATGAAGAAGTACAAAATC
GGTGAGCTGGTGGAGAGCGAAAGGACAAGCGTGGCCCAGAAGTCGGAGCC
GACCTGGAGCACGGAACAGCAAACCGAGGAGAGTTCTGTGAAGTCGTGGC
TGGTGCCCCTCGTCCTGTGCTTGGTGGCCACGCTCTTCTACAAGTTCTTC
TTTGGCGGTGCCAAGCAATAGAAGCTTTCTAGACCAT
BS13223.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:12:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-RB | 405 | CG2140-PB | 1..405 | 17..421 | 2025 | 100 | Plus |
Cyt-b5-RA | 372 | CG2140-PA | 88..372 | 137..421 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-RB | 830 | CG2140-RB | 105..510 | 16..421 | 2030 | 100 | Plus |
Cyt-b5-RA | 692 | CG2140-RA | 88..372 | 137..421 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7535330..7535616 | 135..421 | 1435 | 100 | Plus |
2R | 25286936 | 2R | 7533610..7533730 | 16..136 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:12:36 has no hits.
BS13223.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:30:59 Download gff for
BS13223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-RB | 1..405 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:50 Download gff for
BS13223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-RB | 98..511 | 7..424 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:01 Download gff for
BS13223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-RB | 106..510 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:30:59 Download gff for
BS13223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-RB | 98..511 | 7..424 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:27 Download gff for
BS13223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-RB | 106..510 | 17..421 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:27 Download gff for
BS13223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7535332..7535616 | 137..421 | 100 | | Plus |
2R | 7533611..7533730 | 17..136 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:01 Download gff for
BS13223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3421116..3421235 | 17..136 | 100 | -> | Plus |
arm_2R | 3422837..3423121 | 137..421 | 100 | | Plus |
BS13223.pep Sequence
Translation from 16 to 420
> BS13223.pep
MSSEETKTFTRAEVAKHNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIE
QAGKDATENFEDVGHSNDARDMMKKYKIGELVESERTSVAQKSEPTWSTE
QQTEESSVKSWLVPLVLCLVATLFYKFFFGGAKQ*
BS13223.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-PB | 134 | CG2140-PB | 1..134 | 1..134 | 700 | 100 | Plus |
Cyt-b5-PA | 123 | CG2140-PA | 27..123 | 38..134 | 491 | 96.9 | Plus |
CG3566-PC | 89 | CG3566-PC | 2..81 | 6..85 | 235 | 52.5 | Plus |
CG3566-PD | 106 | CG3566-PD | 2..81 | 6..85 | 235 | 52.5 | Plus |
CG3566-PB | 117 | CG3566-PB | 2..81 | 6..85 | 235 | 52.5 | Plus |