Clone BS13223 Report

Search the DGRC for BS13223

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCyt-b5-RB
Protein status:BS13223.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13223.3prime Sequence

435 bp (435 high quality bases) assembled on 2006-10-13

> BS13223.3prime
ATGGTCTAGAAAGCTTCTATTGCTTGGCACCGCCAAAGAAGAACTTGTAG
AAGAGCGTGGCCACCAAGCACAGGACGAGGGGCACCAGCCACGACTTCAC
AGAACTCTCCTCGGTTTGCTGTTCCGTGCTCCAGGTCGGCTCCGACTTCT
GGGCCACGCTTGTCCTTTCGCTCTCCACCAGCTCACCGATTTTGTACTTC
TTCATCATGTCGCGGGCATCGTTGCTGTGGCCAACGTCCTCAAAGTTCTC
CGTGGCATCTTTGCCGGCCTGCTCGATGAGCACCTCTTCGCCACCGGGAT
GCTCGTTGAGGAAGGCGGTGACGTCGTAGATGTTGTTGTGTATGAGCAGC
CAGGTGTCCTTGTTCGTGTTGTGCTTGGCGACCTCGGCCCGCGTGAAAGT
CTTTGTTTCCTCGCTCGACATGTCGACTGATAACT

BS13223.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2140-PB 405 Cyt-b5-RB 1..405 421..17 2025 100 Minus
CG2140-PA 372 Cyt-b5-RA 88..372 301..17 1425 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-RB 830 CG2140-RB 105..510 422..17 2030 100 Minus
Cyt-b5-RA 692 CG2140-RA 88..372 301..17 1425 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7535330..7535616 303..17 1435 100 Minus
2R 25286936 2R 7533610..7533730 422..302 605 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:15:56 has no hits.

BS13223.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:39 Download gff for BS13223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2140-PB 1..405 17..421 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:05:04 Download gff for BS13223.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-RB 100..513 14..431 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:34:31 Download gff for BS13223.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-RB 100..513 14..431 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:34:31 Download gff for BS13223.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7533605..7533730 302..431 96 -> Minus
2R 7535332..7535619 14..301 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:05:04 Download gff for BS13223.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3421110..3421235 302..431 96 -> Minus
arm_2R 3422837..3423124 14..301 99   Minus

BS13223.5prime Sequence

435 bp (435 high quality bases) assembled on 2006-10-13

> BS13223.5prime
GAAGTTATCAGTCGACATGTCGAGCGAGGAAACAAAGACTTTCACGCGGG
CCGAGGTCGCCAAGCACAACACGAACAAGGACACCTGGCTGCTCATACAC
AACAACATCTACGACGTCACCGCCTTCCTCAACGAGCATCCCGGTGGCGA
AGAGGTGCTCATCGAGCAGGCCGGCAAAGATGCCACGGAGAACTTTGAGG
ACGTTGGCCACAGCAACGATGCCCGCGACATGATGAAGAAGTACAAAATC
GGTGAGCTGGTGGAGAGCGAAAGGACAAGCGTGGCCCAGAAGTCGGAGCC
GACCTGGAGCACGGAACAGCAAACCGAGGAGAGTTCTGTGAAGTCGTGGC
TGGTGCCCCTCGTCCTGTGCTTGGTGGCCACGCTCTTCTACAAGTTCTTC
TTTGGCGGTGCCAAGCAATAGAAGCTTTCTAGACC

BS13223.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2140-PB 405 Cyt-b5-RB 1..405 17..421 2025 100 Plus
CG2140-PA 372 Cyt-b5-RA 88..372 137..421 1425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-RB 830 CG2140-RB 105..510 16..421 2030 100 Plus
Cyt-b5-RA 692 CG2140-RA 88..372 137..421 1425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7535330..7535616 135..421 1435 100 Plus
2R 25286936 2R 7533610..7533730 16..136 605 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:51:32 has no hits.

BS13223.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:39 Download gff for BS13223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2140-PB 1..405 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:15 Download gff for BS13223.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-RB 100..513 7..424 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:03 Download gff for BS13223.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-RB 100..513 7..424 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:03 Download gff for BS13223.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7533605..7533730 7..136 96 -> Plus
2R 7535332..7535619 137..424 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:15 Download gff for BS13223.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3422837..3423124 137..424 99   Plus
arm_2R 3421110..3421235 7..136 96 -> Plus

BS13223.complete Sequence

437 bp assembled on 2006-11-01

GenBank Submission: FJ637394

> BS13223.complete
GAAGTTATCAGTCGACATGTCGAGCGAGGAAACAAAGACTTTCACGCGGG
CCGAGGTCGCCAAGCACAACACGAACAAGGACACCTGGCTGCTCATACAC
AACAACATCTACGACGTCACCGCCTTCCTCAACGAGCATCCCGGTGGCGA
AGAGGTGCTCATCGAGCAGGCCGGCAAAGATGCCACGGAGAACTTTGAGG
ACGTTGGCCACAGCAACGATGCCCGCGACATGATGAAGAAGTACAAAATC
GGTGAGCTGGTGGAGAGCGAAAGGACAAGCGTGGCCCAGAAGTCGGAGCC
GACCTGGAGCACGGAACAGCAAACCGAGGAGAGTTCTGTGAAGTCGTGGC
TGGTGCCCCTCGTCCTGTGCTTGGTGGCCACGCTCTTCTACAAGTTCTTC
TTTGGCGGTGCCAAGCAATAGAAGCTTTCTAGACCAT

BS13223.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-RB 405 CG2140-PB 1..405 17..421 2025 100 Plus
Cyt-b5-RA 372 CG2140-PA 88..372 137..421 1425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-RB 830 CG2140-RB 105..510 16..421 2030 100 Plus
Cyt-b5-RA 692 CG2140-RA 88..372 137..421 1425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7535330..7535616 135..421 1435 100 Plus
2R 25286936 2R 7533610..7533730 16..136 605 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:12:36 has no hits.

BS13223.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:30:59 Download gff for BS13223.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-RB 1..405 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:50 Download gff for BS13223.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-RB 98..511 7..424 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:01 Download gff for BS13223.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-RB 106..510 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:30:59 Download gff for BS13223.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-RB 98..511 7..424 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:27 Download gff for BS13223.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-RB 106..510 17..421 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:27 Download gff for BS13223.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7535332..7535616 137..421 100   Plus
2R 7533611..7533730 17..136 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:01 Download gff for BS13223.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3421116..3421235 17..136 100 -> Plus
arm_2R 3422837..3423121 137..421 100   Plus

BS13223.pep Sequence

Translation from 16 to 420

> BS13223.pep
MSSEETKTFTRAEVAKHNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIE
QAGKDATENFEDVGHSNDARDMMKKYKIGELVESERTSVAQKSEPTWSTE
QQTEESSVKSWLVPLVLCLVATLFYKFFFGGAKQ*

BS13223.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-PB 134 CG2140-PB 1..134 1..134 700 100 Plus
Cyt-b5-PA 123 CG2140-PA 27..123 38..134 491 96.9 Plus
CG3566-PC 89 CG3566-PC 2..81 6..85 235 52.5 Plus
CG3566-PD 106 CG3566-PD 2..81 6..85 235 52.5 Plus
CG3566-PB 117 CG3566-PB 2..81 6..85 235 52.5 Plus