Clone Sequence Records
BS13224.5prime Sequence
579 bp (579 high quality bases) assembled on 2006-10-13
> BS13224.5prime
GAAGTTATCAGTCGACATGTCCCTCTCGTTGCTTCTGCGTGGCGCTGTCC
GTTGCAATGCCGCAAATCTTGTTAAGTCGGCTCGCATCACTCCCCTGAAG
AGCTACTCCACCCTGGTGGCCAATGTCCAGCGGAAGGCGGTGGTCCAGCC
CCTGGCCGTGGCCAAGATTGTAGCGCCCGTCGTGCGCGAGATCTCCGTGA
GTGCGCCCCGCATGGCTTCCGCTGGATCCAGCCACACCCTGCTCTGGACT
GTGGAGCGAATTGTGTCCGCCGGCCTACTGGCCGTCATTCCAGCTGCCTT
CATAGCTCCATCCCAGGTATTGGACGCCCTCATGGCCATCTCTGTCGTCA
TCCACACCCATTGGGGCGTGGAGGCCATGGTAGTTGACTACATGCGGCCA
TCTGTCGTTGGAAACGTCCTGCCCAAGGTAGCCCACATTGCGCTGATCAT
CATCTCGGTGGCCACGCTGGGCGGCCTCTTCTACTTCATCCAAAATGATG
TGGGTCTGGCCAATGGTATCAAGCGCTTCTGGGCCATCAAGGGCAAGGAT
GCCGAGAAGGCTTAAAAGCTTTCTAGACC
BS13224.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10219-PA | 549 | CG10219-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10219-RA | 894 | CG10219-RA | 105..656 | 15..566 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:40:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23759721..23759924 | 566..363 | 1020 | 100 | Minus |
3R | 32079331 | 3R | 23759984..23760173 | 364..175 | 950 | 100 | Minus |
3R | 32079331 | 3R | 23760245..23760361 | 175..59 | 585 | 100 | Minus |
3R | 32079331 | 3R | 23760452..23760496 | 59..15 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:40:51 has no hits.
BS13224.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:39 Download gff for
BS13224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-PA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:44:09 Download gff for
BS13224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-RA | 99..656 | 7..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:18 Download gff for
BS13224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-RA | 99..656 | 7..566 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:18 Download gff for
BS13224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23759721..23759923 | 364..566 | 100 | <- | Minus |
3R | 23759985..23760172 | 176..363 | 100 | <- | Minus |
3R | 23760245..23760360 | 60..175 | 100 | <- | Minus |
3R | 23760452..23760502 | 7..59 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:44:09 Download gff for
BS13224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19585443..19585645 | 364..566 | 100 | <- | Minus |
arm_3R | 19585707..19585894 | 176..363 | 100 | <- | Minus |
arm_3R | 19585967..19586082 | 60..175 | 100 | <- | Minus |
arm_3R | 19586174..19586224 | 7..59 | 92 | | Minus |
BS13224.3prime Sequence
579 bp (579 high quality bases) assembled on 2006-10-13
> BS13224.3prime
ATGGTCTAGAAAGCTTTTAAGCCTTCTCGGCATCCTTGCCCTTGATGGCC
CAGAAGCGCTTGATACCATTGGCCAGACCCACATCATTTTGGATGAAGTA
GAAGAGGCCGCCCAGCGTGGCCACCGAGATGATGATCAGCGCAATGTGGG
CTACCTTGGGCAGGACGTTTCCAACGACAGATGGCCGCATGTAGTCAACT
ACCATGGCCTCCACGCCCCAATGGGTGTGGATGACGACAGAGATGGCCAT
GAGGGCGTCCAATACCTGGGATGGAGCTATGAAGGCAGCTGGAATGACGG
CCAGTAGGCCGGCGGACACAATTCGCTCCACAGTCCAGAGCAGGGTGTGG
CTGGATCCAGCGGAAGCCATGCGGGGCGCACTCACGGAGATCTCGCGCAC
GACGGGCGCTACAATCTTGGCCACGGCCAGGGGCTGGACCACCGCCTTCC
GCTGGACATTGGCCACCAGGGTGGAGTAGCTCTTCAGGGGAGTGATGCGA
GCCGACTTAACAAGATTTGCGGCATTGCAACGGACAGCGCCACGCAGAAG
CAACGAGAGGGACATGTCGACTGATAACT
BS13224.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10219-PA | 549 | CG10219-RA | 1..549 | 565..17 | 2745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10219-RA | 894 | CG10219-RA | 105..656 | 567..16 | 2760 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23759721..23759924 | 16..219 | 1020 | 100 | Plus |
3R | 32079331 | 3R | 23759984..23760173 | 218..407 | 950 | 100 | Plus |
3R | 32079331 | 3R | 23760245..23760361 | 407..523 | 585 | 100 | Plus |
3R | 32079331 | 3R | 23760452..23760496 | 523..567 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:10:08 has no hits.
BS13224.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:39 Download gff for
BS13224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-PA | 1..549 | 17..565 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:13 Download gff for
BS13224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-RA | 99..656 | 16..575 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:28:12 Download gff for
BS13224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-RA | 99..656 | 16..575 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:28:12 Download gff for
BS13224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23759721..23759923 | 16..218 | 100 | <- | Plus |
3R | 23759985..23760172 | 219..406 | 100 | <- | Plus |
3R | 23760245..23760360 | 407..522 | 100 | <- | Plus |
3R | 23760452..23760502 | 523..575 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:13 Download gff for
BS13224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19585443..19585645 | 16..218 | 100 | <- | Plus |
arm_3R | 19585707..19585894 | 219..406 | 100 | <- | Plus |
arm_3R | 19585967..19586082 | 407..522 | 100 | <- | Plus |
arm_3R | 19586174..19586224 | 523..575 | 92 | | Plus |
BS13224.complete Sequence
581 bp assembled on 2006-11-01
GenBank Submission: FJ637395
> BS13224.complete
GAAGTTATCAGTCGACATGTCCCTCTCGTTGCTTCTGCGTGGCGCTGTCC
GTTGCAATGCCGCAAATCTTGTTAAGTCGGCTCGCATCACTCCCCTGAAG
AGCTACTCCACCCTGGTGGCCAATGTCCAGCGGAAGGCGGTGGTCCAGCC
CCTGGCCGTGGCCAAGATTGTAGCGCCCGTCGTGCGCGAGATCTCCGTGA
GTGCGCCCCGCATGGCTTCCGCTGGATCCAGCCACACCCTGCTCTGGACT
GTGGAGCGAATTGTGTCCGCCGGCCTACTGGCCGTCATTCCAGCTGCCTT
CATAGCTCCATCCCAGGTATTGGACGCCCTCATGGCCATCTCTGTCGTCA
TCCACACCCATTGGGGCGTGGAGGCCATGGTAGTTGACTACATGCGGCCA
TCTGTCGTTGGAAACGTCCTGCCCAAGGTAGCCCACATTGCGCTGATCAT
CATCTCGGTGGCCACGCTGGGCGGCCTCTTCTACTTCATCCAAAATGATG
TGGGTCTGGCCAATGGTATCAAGCGCTTCTGGGCCATCAAGGGCAAGGAT
GCCGAGAAGGCTTAAAAGCTTTCTAGACCAT
BS13224.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10219-RA | 549 | CG10219-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10219-RA | 894 | CG10219-RA | 105..656 | 15..566 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23759721..23759924 | 566..363 | 1020 | 100 | Minus |
3R | 32079331 | 3R | 23759984..23760173 | 364..175 | 950 | 100 | Minus |
3R | 32079331 | 3R | 23760245..23760361 | 175..59 | 585 | 100 | Minus |
3R | 32079331 | 3R | 23760452..23760496 | 59..15 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:47:53 has no hits.
BS13224.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:55 Download gff for
BS13224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-RA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:52 Download gff for
BS13224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-RA | 95..652 | 7..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:42 Download gff for
BS13224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-RA | 107..653 | 17..563 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:56 Download gff for
BS13224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-RA | 95..652 | 7..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:06 Download gff for
BS13224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-RA | 107..653 | 17..563 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:06 Download gff for
BS13224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23759724..23759923 | 364..563 | 100 | <- | Minus |
3R | 23759985..23760172 | 176..363 | 100 | <- | Minus |
3R | 23760245..23760360 | 60..175 | 100 | <- | Minus |
3R | 23760452..23760494 | 17..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:42 Download gff for
BS13224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19585446..19585645 | 364..563 | 100 | <- | Minus |
arm_3R | 19585707..19585894 | 176..363 | 100 | <- | Minus |
arm_3R | 19585967..19586082 | 60..175 | 100 | <- | Minus |
arm_3R | 19586174..19586216 | 17..59 | 100 | | Minus |
BS13224.pep Sequence
Translation from 16 to 564
> BS13224.pep
MSLSLLLRGAVRCNAANLVKSARITPLKSYSTLVANVQRKAVVQPLAVAK
IVAPVVREISVSAPRMASAGSSHTLLWTVERIVSAGLLAVIPAAFIAPSQ
VLDALMAISVVIHTHWGVEAMVVDYMRPSVVGNVLPKVAHIALIIISVAT
LGGLFYFIQNDVGLANGIKRFWAIKGKDAEKA*
BS13224.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10219-PA | 182 | CG10219-PA | 1..182 | 1..182 | 888 | 100 | Plus |