Clone BS13224 Report

Search the DGRC for BS13224

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG10219-RA
Protein status:BS13224.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13224.5prime Sequence

579 bp (579 high quality bases) assembled on 2006-10-13

> BS13224.5prime
GAAGTTATCAGTCGACATGTCCCTCTCGTTGCTTCTGCGTGGCGCTGTCC
GTTGCAATGCCGCAAATCTTGTTAAGTCGGCTCGCATCACTCCCCTGAAG
AGCTACTCCACCCTGGTGGCCAATGTCCAGCGGAAGGCGGTGGTCCAGCC
CCTGGCCGTGGCCAAGATTGTAGCGCCCGTCGTGCGCGAGATCTCCGTGA
GTGCGCCCCGCATGGCTTCCGCTGGATCCAGCCACACCCTGCTCTGGACT
GTGGAGCGAATTGTGTCCGCCGGCCTACTGGCCGTCATTCCAGCTGCCTT
CATAGCTCCATCCCAGGTATTGGACGCCCTCATGGCCATCTCTGTCGTCA
TCCACACCCATTGGGGCGTGGAGGCCATGGTAGTTGACTACATGCGGCCA
TCTGTCGTTGGAAACGTCCTGCCCAAGGTAGCCCACATTGCGCTGATCAT
CATCTCGGTGGCCACGCTGGGCGGCCTCTTCTACTTCATCCAAAATGATG
TGGGTCTGGCCAATGGTATCAAGCGCTTCTGGGCCATCAAGGGCAAGGAT
GCCGAGAAGGCTTAAAAGCTTTCTAGACC

BS13224.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10219-PA 549 CG10219-RA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10219-RA 894 CG10219-RA 105..656 15..566 2760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23759721..23759924 566..363 1020 100 Minus
3R 32079331 3R 23759984..23760173 364..175 950 100 Minus
3R 32079331 3R 23760245..23760361 175..59 585 100 Minus
3R 32079331 3R 23760452..23760496 59..15 225 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:40:51 has no hits.

BS13224.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:39 Download gff for BS13224.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10219-PA 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:44:09 Download gff for BS13224.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10219-RA 99..656 7..566 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:18 Download gff for BS13224.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10219-RA 99..656 7..566 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:18 Download gff for BS13224.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23759721..23759923 364..566 100 <- Minus
3R 23759985..23760172 176..363 100 <- Minus
3R 23760245..23760360 60..175 100 <- Minus
3R 23760452..23760502 7..59 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:44:09 Download gff for BS13224.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19585443..19585645 364..566 100 <- Minus
arm_3R 19585707..19585894 176..363 100 <- Minus
arm_3R 19585967..19586082 60..175 100 <- Minus
arm_3R 19586174..19586224 7..59 92   Minus

BS13224.3prime Sequence

579 bp (579 high quality bases) assembled on 2006-10-13

> BS13224.3prime
ATGGTCTAGAAAGCTTTTAAGCCTTCTCGGCATCCTTGCCCTTGATGGCC
CAGAAGCGCTTGATACCATTGGCCAGACCCACATCATTTTGGATGAAGTA
GAAGAGGCCGCCCAGCGTGGCCACCGAGATGATGATCAGCGCAATGTGGG
CTACCTTGGGCAGGACGTTTCCAACGACAGATGGCCGCATGTAGTCAACT
ACCATGGCCTCCACGCCCCAATGGGTGTGGATGACGACAGAGATGGCCAT
GAGGGCGTCCAATACCTGGGATGGAGCTATGAAGGCAGCTGGAATGACGG
CCAGTAGGCCGGCGGACACAATTCGCTCCACAGTCCAGAGCAGGGTGTGG
CTGGATCCAGCGGAAGCCATGCGGGGCGCACTCACGGAGATCTCGCGCAC
GACGGGCGCTACAATCTTGGCCACGGCCAGGGGCTGGACCACCGCCTTCC
GCTGGACATTGGCCACCAGGGTGGAGTAGCTCTTCAGGGGAGTGATGCGA
GCCGACTTAACAAGATTTGCGGCATTGCAACGGACAGCGCCACGCAGAAG
CAACGAGAGGGACATGTCGACTGATAACT

BS13224.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10219-PA 549 CG10219-RA 1..549 565..17 2745 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10219-RA 894 CG10219-RA 105..656 567..16 2760 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23759721..23759924 16..219 1020 100 Plus
3R 32079331 3R 23759984..23760173 218..407 950 100 Plus
3R 32079331 3R 23760245..23760361 407..523 585 100 Plus
3R 32079331 3R 23760452..23760496 523..567 225 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:10:08 has no hits.

BS13224.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:39 Download gff for BS13224.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10219-PA 1..549 17..565 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:13 Download gff for BS13224.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10219-RA 99..656 16..575 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:28:12 Download gff for BS13224.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10219-RA 99..656 16..575 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:28:12 Download gff for BS13224.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23759721..23759923 16..218 100 <- Plus
3R 23759985..23760172 219..406 100 <- Plus
3R 23760245..23760360 407..522 100 <- Plus
3R 23760452..23760502 523..575 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:13 Download gff for BS13224.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19585443..19585645 16..218 100 <- Plus
arm_3R 19585707..19585894 219..406 100 <- Plus
arm_3R 19585967..19586082 407..522 100 <- Plus
arm_3R 19586174..19586224 523..575 92   Plus

BS13224.complete Sequence

581 bp assembled on 2006-11-01

GenBank Submission: FJ637395

> BS13224.complete
GAAGTTATCAGTCGACATGTCCCTCTCGTTGCTTCTGCGTGGCGCTGTCC
GTTGCAATGCCGCAAATCTTGTTAAGTCGGCTCGCATCACTCCCCTGAAG
AGCTACTCCACCCTGGTGGCCAATGTCCAGCGGAAGGCGGTGGTCCAGCC
CCTGGCCGTGGCCAAGATTGTAGCGCCCGTCGTGCGCGAGATCTCCGTGA
GTGCGCCCCGCATGGCTTCCGCTGGATCCAGCCACACCCTGCTCTGGACT
GTGGAGCGAATTGTGTCCGCCGGCCTACTGGCCGTCATTCCAGCTGCCTT
CATAGCTCCATCCCAGGTATTGGACGCCCTCATGGCCATCTCTGTCGTCA
TCCACACCCATTGGGGCGTGGAGGCCATGGTAGTTGACTACATGCGGCCA
TCTGTCGTTGGAAACGTCCTGCCCAAGGTAGCCCACATTGCGCTGATCAT
CATCTCGGTGGCCACGCTGGGCGGCCTCTTCTACTTCATCCAAAATGATG
TGGGTCTGGCCAATGGTATCAAGCGCTTCTGGGCCATCAAGGGCAAGGAT
GCCGAGAAGGCTTAAAAGCTTTCTAGACCAT

BS13224.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10219-RA 549 CG10219-PA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG10219-RA 894 CG10219-RA 105..656 15..566 2760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23759721..23759924 566..363 1020 100 Minus
3R 32079331 3R 23759984..23760173 364..175 950 100 Minus
3R 32079331 3R 23760245..23760361 175..59 585 100 Minus
3R 32079331 3R 23760452..23760496 59..15 225 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:47:53 has no hits.

BS13224.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:55 Download gff for BS13224.complete
Subject Subject Range Query Range Percent Splice Strand
CG10219-RA 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:52 Download gff for BS13224.complete
Subject Subject Range Query Range Percent Splice Strand
CG10219-RA 95..652 7..566 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:42 Download gff for BS13224.complete
Subject Subject Range Query Range Percent Splice Strand
CG10219-RA 107..653 17..563 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:56 Download gff for BS13224.complete
Subject Subject Range Query Range Percent Splice Strand
CG10219-RA 95..652 7..566 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:06 Download gff for BS13224.complete
Subject Subject Range Query Range Percent Splice Strand
CG10219-RA 107..653 17..563 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:06 Download gff for BS13224.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23759724..23759923 364..563 100 <- Minus
3R 23759985..23760172 176..363 100 <- Minus
3R 23760245..23760360 60..175 100 <- Minus
3R 23760452..23760494 17..59 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:42 Download gff for BS13224.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19585446..19585645 364..563 100 <- Minus
arm_3R 19585707..19585894 176..363 100 <- Minus
arm_3R 19585967..19586082 60..175 100 <- Minus
arm_3R 19586174..19586216 17..59 100   Minus

BS13224.pep Sequence

Translation from 16 to 564

> BS13224.pep
MSLSLLLRGAVRCNAANLVKSARITPLKSYSTLVANVQRKAVVQPLAVAK
IVAPVVREISVSAPRMASAGSSHTLLWTVERIVSAGLLAVIPAAFIAPSQ
VLDALMAISVVIHTHWGVEAMVVDYMRPSVVGNVLPKVAHIALIIISVAT
LGGLFYFIQNDVGLANGIKRFWAIKGKDAEKA*

BS13224.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10219-PA 182 CG10219-PA 1..182 1..182 888 100 Plus