Clone BS13227 Report

Search the DGRC for BS13227

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptFas3-RB
Protein status:BS13227.pep: full length peptide match
Sequenced Size:1238

Clone Sequence Records

BS13227.5prime Sequence

576 bp (560 high quality bases) assembled on 2006-10-13

> BS13227.5prime
GAAGTTATCACTCGACATGTCACGGATCGTTTTTATATGTCTCGCAGCCA
TCTTAACAGATGCACTCACCTGGGCCCAGGTGAATGTGGAACCCAACACA
GCGCTCCTCAACGAAGGCGATCGCACCGAGCTGCTCTGTCGGTACGGCAG
ATCCATCAACTACTGCCGCATTGAGATTCCCGGCGAGCAGAAGGTACTCA
ACCTGTCGCCGGAGTGGAGCAAGACACCCGGATTCACGTACTTCGGAGCG
GGTCTCACGGCCGGACAGTGCGGCGTGAGCATCGAGAGGGTCAAGGCCAG
CAACAATGGCCAGGTCAAGTGCAGTCTGGGCGTCGAGGGAGAGGAGCTGT
CGGGCACCATCGACCTGGTCGTGGCACTGCGTCCCCAGCAGCCCATCATC
GAGCTGTTGTCGCGGCCAAATCGCGAGGGCTACTTCAACGAGGGCACTGA
ATTCAGGGCCCGCTGCAGCGTTCGCGATGGCCGTCCGCCGGCTAACATCT
CGTGGTACATCGACAACATGCCGGCCCACAAGCGCACCACTCCCCTGGAG
GTCATGTCCTCGACCAACGACAACGT

BS13227.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5803-PA 1527 Fas3-RA 1..560 17..576 2775 99.8 Plus
CG5803-PB 1206 Fas3-RB 1..560 17..576 2775 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
Fas3-RF 2422 CG5803-RF 586..1146 16..576 2790 99.8 Plus
Fas3-RG 3265 CG5803-RG 586..1146 16..576 2790 99.8 Plus
Fas3-RE 2567 CG5803-RE 586..1146 16..576 2790 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18383399..18383719 57..377 1605 100 Plus
2L 23513712 2L 18383839..18384037 378..576 980 99.5 Plus
2L 23513712 2L 18320687..18320730 16..59 220 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:49:42 has no hits.

BS13227.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:41 Download gff for BS13227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5803-PB 1..560 17..576 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:49:15 Download gff for BS13227.5prime
Subject Subject Range Query Range Percent Splice Strand
Fas3-RD 586..1146 16..576 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:30:02 Download gff for BS13227.5prime
Subject Subject Range Query Range Percent Splice Strand
Fas3-RE 586..1146 16..576 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:30:02 Download gff for BS13227.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18383839..18384037 378..576 99   Plus
2L 18320687..18320730 16..59 100 -> Plus
2L 18383402..18383719 60..377 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:49:15 Download gff for BS13227.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18320687..18320730 16..59 100 -> Plus
arm_2L 18383402..18383719 60..377 100 -> Plus
arm_2L 18383839..18384037 378..576 99   Plus

BS13227.complete Sequence

1238 bp assembled on 2008-08-15

GenBank Submission: KX801845

> BS13227.complete
GAAGTTATCACTCGACATGTCACGGATCGTTTTTATATGTCTCGCAGCCA
TCTTAACAGATGCACTCACCTGGGCCCAGGTGAATGTGGAACCCAACACA
GCGCTCCTCAACGAAGGCGATCGCACCGAGCTGCTCTGTCGGTACGGCAG
ATCCATCAACTACTGCCGCATTGAGATTCCCGGCGAGCAGAAGGTACTCA
ACCTGTCGCCGGAGTGGAGCAAGACACCCGGATTCACGTACTTCGGAGCG
GGTCTCACGGCCGGACAGTGCGGCGTGAGCATCGAGAGGGTCAAGGCCAG
CAACAATGGCCAGGTCAAGTGCAGTCTGGGCGTCGAGGGAGAGGAGCTGT
CGGGCACCATCGACCTGGTCGTGGCACTGCGTCCCCAGCAGCCCATCATC
GAGCTGTTGTCGCGGCCAAATCGCGAGGGCTACTTCAACGAGGGCACTGA
ATTCAGGGCCCGCTGCAGCGTTCGCGATGGCCGTCCGCCGGCTAACATCT
CGTGGTACATCGACAACATGCCGGCCAACAAGCGCACCACTCCCCTGGAG
GTCATGTCCTCGACCAACGACAACGTGGAGCTATCGACCTCCGTGCAGGA
AATCCAGTGGCACCTGTCGCCCGAGGACAGCAACCGGAAACTGGTCTGCC
GCTCCCACCACCAAACCGATCGCGAGAGTGTGCCGCCCCAGGAAGCTGCC
TACATCATCAACGTGCGCTATGCTCCCGTCCATCAGCCAGATGCCGCCGT
GTATGGACTCTACCTCGAGCACACTGCCATTGTGAACATAACCATCCGCG
CCAGTCCGCAGCCCAAGATCGAGTGGACCATCGATGGAGCTATTGTGGGG
CAGGGACGCACCGATGGACGCTACTCGGCGTATGAGCCGCAGTATCTGGG
CAACGATGAGTACAACGTTACACTGGCCATTGCCGGACTGACCCTGGAAG
ATACCACCAAAATCTACAATCTGAGGGCCAGCAATGAACTGGGACTGACG
GACTACCAGGTGCGAATCAGTTCGTCGAGCAAACCGCCCAGCAGCAGCCT
CGATGTGGCGGCAATCGTTGGCATTGTGGTCGCCGTTGCCGTTTTGGTCC
TGGTCGTTTTACTGATTGTGTTTGCACGGGCTACTGGCCGATGGTGTTTT
GGCGGCAAATCAATCAAGACGCCCACAAACGAAACCAAGACAAACAACTC
GTCTATGCTGAACTTGTACTAAAAGCTTTCTAGACCAT

BS13227.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
Fas3-RF 1206 CG5803-PF 1..1206 17..1222 6030 100 Plus
Fas3-RB 1206 CG5803-PB 1..1206 17..1222 6030 100 Plus
Fas3-RG 1674 CG5803-PG 1..1171 17..1187 5855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
Fas3-RF 2422 CG5803-RF 586..1793 16..1223 6040 100 Plus
Fas3-RB 2952 CG5803-RB 586..1793 16..1223 6040 100 Plus
Fas3-RG 3265 CG5803-RG 586..1757 16..1187 5860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18384459..18384894 720..1155 2180 100 Plus
2L 23513712 2L 18383839..18384180 378..719 1710 100 Plus
2L 23513712 2L 18383399..18383719 57..377 1605 100 Plus
2L 23513712 2L 18320687..18320730 16..59 220 100 Plus
2L 23513712 2L 18392245..18392282 1186..1223 190 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:14:35 has no hits.

BS13227.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:52:44 Download gff for BS13227.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 587..1796 16..1226 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:36 Download gff for BS13227.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 587..1790 17..1220 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:22 Download gff for BS13227.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 588..1791 17..1220 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:42 Download gff for BS13227.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 587..1790 17..1220 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:42 Download gff for BS13227.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18383839..18384180 378..719 100 -> Plus
2L 18384459..18384893 720..1154 100 -> Plus
2L 18387287..18387317 1155..1185 100 -> Plus
2L 18392245..18392279 1186..1220 100   Plus
2L 18320688..18320730 17..59 100 -> Plus
2L 18383402..18383719 60..377 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:36 Download gff for BS13227.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18320688..18320730 17..59 100 -> Plus
arm_2L 18383402..18383719 60..377 100 -> Plus
arm_2L 18384459..18384893 720..1154 100 -> Plus
arm_2L 18387287..18387317 1155..1185 100 -> Plus
arm_2L 18383839..18384180 378..719 100 -> Plus
arm_2L 18392245..18392279 1186..1220 100   Plus

BS13227.pep Sequence

Translation from 16 to 1221

> BS13227.pep
MSRIVFICLAAILTDALTWAQVNVEPNTALLNEGDRTELLCRYGRSINYC
RIEIPGEQKVLNLSPEWSKTPGFTYFGAGLTAGQCGVSIERVKASNNGQV
KCSLGVEGEELSGTIDLVVALRPQQPIIELLSRPNREGYFNEGTEFRARC
SVRDGRPPANISWYIDNMPANKRTTPLEVMSSTNDNVELSTSVQEIQWHL
SPEDSNRKLVCRSHHQTDRESVPPQEAAYIINVRYAPVHQPDAAVYGLYL
EHTAIVNITIRASPQPKIEWTIDGAIVGQGRTDGRYSAYEPQYLGNDEYN
VTLAIAGLTLEDTTKIYNLRASNELGLTDYQVRISSSSKPPSSSLDVAAI
VGIVVAVAVLVLVVLLIVFARATGRWCFGGKSIKTPTNETKTNNSSMLNL
Y*

BS13227.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
Fas3-PF 401 CG5803-PF 1..401 1..401 2079 100 Plus
Fas3-PB 401 CG5803-PB 1..401 1..401 2079 100 Plus
Fas3-PA 508 CG5803-PA 1..396 1..396 2027 98.7 Plus
Fas3-PG 557 CG5803-PG 1..396 1..396 2027 98.7 Plus
Fas3-PE 577 CG5803-PE 1..391 1..391 2024 99.7 Plus