Clone Sequence Records
BS13227.5prime Sequence
576 bp (560 high quality bases) assembled on 2006-10-13
> BS13227.5prime
GAAGTTATCACTCGACATGTCACGGATCGTTTTTATATGTCTCGCAGCCA
TCTTAACAGATGCACTCACCTGGGCCCAGGTGAATGTGGAACCCAACACA
GCGCTCCTCAACGAAGGCGATCGCACCGAGCTGCTCTGTCGGTACGGCAG
ATCCATCAACTACTGCCGCATTGAGATTCCCGGCGAGCAGAAGGTACTCA
ACCTGTCGCCGGAGTGGAGCAAGACACCCGGATTCACGTACTTCGGAGCG
GGTCTCACGGCCGGACAGTGCGGCGTGAGCATCGAGAGGGTCAAGGCCAG
CAACAATGGCCAGGTCAAGTGCAGTCTGGGCGTCGAGGGAGAGGAGCTGT
CGGGCACCATCGACCTGGTCGTGGCACTGCGTCCCCAGCAGCCCATCATC
GAGCTGTTGTCGCGGCCAAATCGCGAGGGCTACTTCAACGAGGGCACTGA
ATTCAGGGCCCGCTGCAGCGTTCGCGATGGCCGTCCGCCGGCTAACATCT
CGTGGTACATCGACAACATGCCGGCCCACAAGCGCACCACTCCCCTGGAG
GTCATGTCCTCGACCAACGACAACGT
BS13227.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:44:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5803-PA | 1527 | Fas3-RA | 1..560 | 17..576 | 2775 | 99.8 | Plus |
CG5803-PB | 1206 | Fas3-RB | 1..560 | 17..576 | 2775 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fas3-RF | 2422 | CG5803-RF | 586..1146 | 16..576 | 2790 | 99.8 | Plus |
Fas3-RG | 3265 | CG5803-RG | 586..1146 | 16..576 | 2790 | 99.8 | Plus |
Fas3-RE | 2567 | CG5803-RE | 586..1146 | 16..576 | 2790 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:49:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18383399..18383719 | 57..377 | 1605 | 100 | Plus |
2L | 23513712 | 2L | 18383839..18384037 | 378..576 | 980 | 99.5 | Plus |
2L | 23513712 | 2L | 18320687..18320730 | 16..59 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:49:42 has no hits.
BS13227.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:41 Download gff for
BS13227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5803-PB | 1..560 | 17..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:49:15 Download gff for
BS13227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fas3-RD | 586..1146 | 16..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:30:02 Download gff for
BS13227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fas3-RE | 586..1146 | 16..576 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:30:02 Download gff for
BS13227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18383839..18384037 | 378..576 | 99 | | Plus |
2L | 18320687..18320730 | 16..59 | 100 | -> | Plus |
2L | 18383402..18383719 | 60..377 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:49:15 Download gff for
BS13227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18320687..18320730 | 16..59 | 100 | -> | Plus |
arm_2L | 18383402..18383719 | 60..377 | 100 | -> | Plus |
arm_2L | 18383839..18384037 | 378..576 | 99 | | Plus |
BS13227.complete Sequence
1238 bp assembled on 2008-08-15
GenBank Submission: KX801845
> BS13227.complete
GAAGTTATCACTCGACATGTCACGGATCGTTTTTATATGTCTCGCAGCCA
TCTTAACAGATGCACTCACCTGGGCCCAGGTGAATGTGGAACCCAACACA
GCGCTCCTCAACGAAGGCGATCGCACCGAGCTGCTCTGTCGGTACGGCAG
ATCCATCAACTACTGCCGCATTGAGATTCCCGGCGAGCAGAAGGTACTCA
ACCTGTCGCCGGAGTGGAGCAAGACACCCGGATTCACGTACTTCGGAGCG
GGTCTCACGGCCGGACAGTGCGGCGTGAGCATCGAGAGGGTCAAGGCCAG
CAACAATGGCCAGGTCAAGTGCAGTCTGGGCGTCGAGGGAGAGGAGCTGT
CGGGCACCATCGACCTGGTCGTGGCACTGCGTCCCCAGCAGCCCATCATC
GAGCTGTTGTCGCGGCCAAATCGCGAGGGCTACTTCAACGAGGGCACTGA
ATTCAGGGCCCGCTGCAGCGTTCGCGATGGCCGTCCGCCGGCTAACATCT
CGTGGTACATCGACAACATGCCGGCCAACAAGCGCACCACTCCCCTGGAG
GTCATGTCCTCGACCAACGACAACGTGGAGCTATCGACCTCCGTGCAGGA
AATCCAGTGGCACCTGTCGCCCGAGGACAGCAACCGGAAACTGGTCTGCC
GCTCCCACCACCAAACCGATCGCGAGAGTGTGCCGCCCCAGGAAGCTGCC
TACATCATCAACGTGCGCTATGCTCCCGTCCATCAGCCAGATGCCGCCGT
GTATGGACTCTACCTCGAGCACACTGCCATTGTGAACATAACCATCCGCG
CCAGTCCGCAGCCCAAGATCGAGTGGACCATCGATGGAGCTATTGTGGGG
CAGGGACGCACCGATGGACGCTACTCGGCGTATGAGCCGCAGTATCTGGG
CAACGATGAGTACAACGTTACACTGGCCATTGCCGGACTGACCCTGGAAG
ATACCACCAAAATCTACAATCTGAGGGCCAGCAATGAACTGGGACTGACG
GACTACCAGGTGCGAATCAGTTCGTCGAGCAAACCGCCCAGCAGCAGCCT
CGATGTGGCGGCAATCGTTGGCATTGTGGTCGCCGTTGCCGTTTTGGTCC
TGGTCGTTTTACTGATTGTGTTTGCACGGGCTACTGGCCGATGGTGTTTT
GGCGGCAAATCAATCAAGACGCCCACAAACGAAACCAAGACAAACAACTC
GTCTATGCTGAACTTGTACTAAAAGCTTTCTAGACCAT
BS13227.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fas3-RF | 1206 | CG5803-PF | 1..1206 | 17..1222 | 6030 | 100 | Plus |
Fas3-RB | 1206 | CG5803-PB | 1..1206 | 17..1222 | 6030 | 100 | Plus |
Fas3-RG | 1674 | CG5803-PG | 1..1171 | 17..1187 | 5855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fas3-RF | 2422 | CG5803-RF | 586..1793 | 16..1223 | 6040 | 100 | Plus |
Fas3-RB | 2952 | CG5803-RB | 586..1793 | 16..1223 | 6040 | 100 | Plus |
Fas3-RG | 3265 | CG5803-RG | 586..1757 | 16..1187 | 5860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18384459..18384894 | 720..1155 | 2180 | 100 | Plus |
2L | 23513712 | 2L | 18383839..18384180 | 378..719 | 1710 | 100 | Plus |
2L | 23513712 | 2L | 18383399..18383719 | 57..377 | 1605 | 100 | Plus |
2L | 23513712 | 2L | 18320687..18320730 | 16..59 | 220 | 100 | Plus |
2L | 23513712 | 2L | 18392245..18392282 | 1186..1223 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:14:35 has no hits.
BS13227.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:52:44 Download gff for
BS13227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fas3-RB | 587..1796 | 16..1226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:36 Download gff for
BS13227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fas3-RB | 587..1790 | 17..1220 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:22 Download gff for
BS13227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fas3-RB | 588..1791 | 17..1220 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:42 Download gff for
BS13227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fas3-RB | 587..1790 | 17..1220 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:42 Download gff for
BS13227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18383839..18384180 | 378..719 | 100 | -> | Plus |
2L | 18384459..18384893 | 720..1154 | 100 | -> | Plus |
2L | 18387287..18387317 | 1155..1185 | 100 | -> | Plus |
2L | 18392245..18392279 | 1186..1220 | 100 | | Plus |
2L | 18320688..18320730 | 17..59 | 100 | -> | Plus |
2L | 18383402..18383719 | 60..377 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:36 Download gff for
BS13227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18320688..18320730 | 17..59 | 100 | -> | Plus |
arm_2L | 18383402..18383719 | 60..377 | 100 | -> | Plus |
arm_2L | 18384459..18384893 | 720..1154 | 100 | -> | Plus |
arm_2L | 18387287..18387317 | 1155..1185 | 100 | -> | Plus |
arm_2L | 18383839..18384180 | 378..719 | 100 | -> | Plus |
arm_2L | 18392245..18392279 | 1186..1220 | 100 | | Plus |
BS13227.pep Sequence
Translation from 16 to 1221
> BS13227.pep
MSRIVFICLAAILTDALTWAQVNVEPNTALLNEGDRTELLCRYGRSINYC
RIEIPGEQKVLNLSPEWSKTPGFTYFGAGLTAGQCGVSIERVKASNNGQV
KCSLGVEGEELSGTIDLVVALRPQQPIIELLSRPNREGYFNEGTEFRARC
SVRDGRPPANISWYIDNMPANKRTTPLEVMSSTNDNVELSTSVQEIQWHL
SPEDSNRKLVCRSHHQTDRESVPPQEAAYIINVRYAPVHQPDAAVYGLYL
EHTAIVNITIRASPQPKIEWTIDGAIVGQGRTDGRYSAYEPQYLGNDEYN
VTLAIAGLTLEDTTKIYNLRASNELGLTDYQVRISSSSKPPSSSLDVAAI
VGIVVAVAVLVLVVLLIVFARATGRWCFGGKSIKTPTNETKTNNSSMLNL
Y*
BS13227.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:34:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fas3-PF | 401 | CG5803-PF | 1..401 | 1..401 | 2079 | 100 | Plus |
Fas3-PB | 401 | CG5803-PB | 1..401 | 1..401 | 2079 | 100 | Plus |
Fas3-PA | 508 | CG5803-PA | 1..396 | 1..396 | 2027 | 98.7 | Plus |
Fas3-PG | 557 | CG5803-PG | 1..396 | 1..396 | 2027 | 98.7 | Plus |
Fas3-PE | 577 | CG5803-PE | 1..391 | 1..391 | 2024 | 99.7 | Plus |