Clone Sequence Records
BS13228.complete Sequence
506 bp assembled on 2010-02-09
GenBank Submission: KX802884
> BS13228.complete
GAAGTTATCAGTCGACATGGCTGAAAAGCTGAGAATGGCGGCAAGGGTCT
TTGTGTATGGCACGTTGAAGCGCGGTGAGCCCAATCACCACTGGCTGACG
AAAAAGGAGAACGGCCAAGCCCGATTCCTTGGAAGGGGGAAAACGGAAAC
GAAGTTTCCCCTGGTTGTCGGAACCCGCTACAACATCCCATTTCTGCTCG
CCCGCCCGGGTGAGGGGAACCACATAGAAGGCGAAGTCTACGAAGTGGAC
GAGACCATGCTCTCCAAACTGGACATACTAGAAGACTACCCGGACTACTA
TGATCGCGAGCAACAAACCATATTAATGGAACAGAATGAAACCATTCAGT
GCTGGCTGTACCTGATTCGCAACTTCCCAGACAAGATGCTGGCCAAGGAG
CTGCTGATCTCGTACCACAACACGCCGGAGAGGCCGTACAATGAAAAGTC
AGTACGCACTGTTTCAGCCAGAGATGATCTTTCTTACTGAAAGCTTTCTA
GACCAT
BS13228.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2811-RA | 474 | CG2811-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
| CG2811-RB | 474 | CG2811-PB | 1..431 | 17..447 | 2155 | 100 | Plus |
| CG2811-RC | 456 | CG2811-PC | 1..413 | 35..447 | 2065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:47:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2811-RA | 720 | CG2811-RA | 90..563 | 17..490 | 2370 | 100 | Plus |
| CG2811-RB | 669 | CG2811-RB | 90..520 | 17..447 | 2155 | 100 | Plus |
| CG2811-RC | 566 | CG2811-RC | 1..417 | 31..447 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24940072..24940394 | 339..17 | 1615 | 100 | Minus |
| 2R | 25286936 | 2R | 24939863..24940013 | 490..340 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:47:04 has no hits.
BS13228.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:10 Download gff for
BS13228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2811-RA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:16 Download gff for
BS13228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2811-RA | 77..549 | 17..489 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:20 Download gff for
BS13228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2811-RA | 90..562 | 17..489 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:20 Download gff for
BS13228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2811-RA | 77..549 | 17..489 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:45 Download gff for
BS13228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2811-RA | 90..562 | 17..489 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:45 Download gff for
BS13228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24939864..24940013 | 340..489 | 100 | <- | Minus |
| 2R | 24940072..24940394 | 17..339 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:20 Download gff for
BS13228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20827387..20827536 | 340..489 | 100 | <- | Minus |
| arm_2R | 20827595..20827917 | 17..339 | 100 | | Minus |
BS13228.3prime Sequence
504 bp (504 high quality bases) assembled on 2006-10-13
> BS13228.3prime
ATGGTCTAGAAAGCTTTCAGTAAGAAAGATCATCTCTGGCTGAAACAGTG
CGTACTGACTTTTCATTGTACGGCCTCTCCGGCGTGTTGTGGTACGAGAT
CAGCAGCTCCTTGGCCAGCATCTTGTCTGGGAAGTTGCGAATCAGGTACA
GCCAGCACTGAATGGTTTCATTCTGTTCCATTAATATGGTTTGTTGCTCG
CGATCATAGTAGTCCGGGTAGTCTTCTAGTATGTCCAGTTTGGAGAGCAT
GGTCTCGTCCACTTCGTAGACTTCGCCTTCTATGTGGTTCCCCTCACCCG
GGCGGGCGAGCAGAAATGGGATGTTGTAGCGGGTTCCGACAACCAGGGGA
AACTTCGTTTCCGTTTTCCCCCTTCCAAGGAATCGGGCTTGGCCGTTCTC
CTTTTTCGTCAGCCAGTGGTGATTGGGCTCACCGCGCTTCAACGTGCCAT
ACACAAAGACCCTTGCCGCCATTCTCAGCTTTTCAGCCATGTCGACTGAT
AACT
BS13228.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:44:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2811-PA | 474 | CG2811-RA | 1..474 | 490..17 | 2370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:09:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2811-RA | 720 | CG2811-RA | 90..563 | 490..17 | 2370 | 100 | Minus |
| CG2811-RB | 669 | CG2811-RB | 90..520 | 490..60 | 2155 | 100 | Minus |
| CG2811-RC | 566 | CG2811-RC | 1..417 | 476..60 | 2085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:09:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24940072..24940394 | 168..490 | 1615 | 100 | Plus |
| 2R | 25286936 | 2R | 24939863..24940013 | 17..167 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 02:09:46 has no hits.
BS13228.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:42 Download gff for
BS13228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2811-PA | 1..474 | 17..490 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:08:30 Download gff for
BS13228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2811-RA | 84..566 | 10..497 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:02:59 Download gff for
BS13228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2811-RA | 84..566 | 10..497 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:02:59 Download gff for
BS13228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24939859..24940013 | 10..167 | 97 | <- | Plus |
| 2R | 24940072..24940398 | 168..496 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:08:30 Download gff for
BS13228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20827595..20827921 | 168..496 | 98 | <- | Plus |
| arm_2R | 20827382..20827536 | 10..167 | 97 | <- | Plus |
BS13228.5prime Sequence
504 bp (504 high quality bases) assembled on 2006-10-13
> BS13228.5prime
GAAGTTATCAGTCGACATGGCTGAAAAGCTGAGAATGGCGGCAAGGGTCT
TTGTGTATGGCACGTTGAAGCGCGGTGAGCCCAATCACCACTGGCTGACG
AAAAAGGAGAACGGCCAAGCCCGATTCCTTGGAAGGGGGAAAACGGAAAC
GAAGTTTCCCCTGGTTGTCGGAACCCGCTACAACATCCCATTTCTGCTCG
CCCGCCCGGGTGAGGGGAACCACATAGAAGGCGAAGTCTACGAAGTGGAC
GAGACCATGCTCTCCAAACTGGACATACTAGAAGACTACCCGGACTACTA
TGATCGCGAGCAACAAACCATATTAATGGAACAGAATGAAACCATTCAGT
GCTGGCTGTACCTGATTCGCAACTTCCCAGACAAGATGCTGGCCAAGGAG
CTGCTGATCTCGTACCACAACACGCCGGAGAGGCCGTACAATGAAAAGTC
AGTACGCACTGTTTCAGCCAGAGATGATCTTTCTTACTGAAAGCTTTCTA
GACC
BS13228.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:44:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2811-PA | 474 | CG2811-RA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:47:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2811-RA | 720 | CG2811-RA | 90..563 | 17..490 | 2370 | 100 | Plus |
| CG2811-RB | 669 | CG2811-RB | 90..520 | 17..447 | 2155 | 100 | Plus |
| CG2811-RC | 566 | CG2811-RC | 1..417 | 31..447 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:47:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24940072..24940394 | 339..17 | 1615 | 100 | Minus |
| 2R | 25286936 | 2R | 24939863..24940013 | 490..340 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:47:25 has no hits.
BS13228.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:42 Download gff for
BS13228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2811-PA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:54:22 Download gff for
BS13228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2811-RA | 84..566 | 10..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:04 Download gff for
BS13228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2811-RA | 84..566 | 10..497 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:04 Download gff for
BS13228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24939859..24940013 | 340..497 | 97 | <- | Minus |
| 2R | 24940072..24940398 | 11..339 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:54:22 Download gff for
BS13228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20827595..20827921 | 11..339 | 98 | <- | Minus |
| arm_2R | 20827382..20827536 | 340..497 | 97 | <- | Minus |
BS13228.pep Sequence
Translation from 16 to 489
> BS13228.pep
MAEKLRMAARVFVYGTLKRGEPNHHWLTKKENGQARFLGRGKTETKFPLV
VGTRYNIPFLLARPGEGNHIEGEVYEVDETMLSKLDILEDYPDYYDREQQ
TILMEQNETIQCWLYLIRNFPDKMLAKELLISYHNTPERPYNEKSVRTVS
ARDDLSY*
BS13228.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2811-PA | 157 | CG2811-PA | 1..157 | 1..157 | 835 | 100 | Plus |
| CG2811-PB | 157 | CG2811-PB | 1..143 | 1..143 | 768 | 100 | Plus |
| CG2811-PC | 151 | CG2811-PC | 1..137 | 7..143 | 740 | 100 | Plus |
| Tina-1-PA | 167 | CG2803-PA | 4..163 | 2..157 | 336 | 43.8 | Plus |
| Tina-1-PB | 84 | CG2803-PB | 1..80 | 81..157 | 139 | 38.8 | Plus |
