Clone Sequence Records
BS13229.complete Sequence
2081 bp assembled on 2009-12-07
GenBank Submission: KX804486
> BS13229.complete
GAAGTTATCAGTCGACATGACGGCGGCCACGGGTGGTGGGAGTAGTGGGG
CGGGGGGTGGTAAGACTGGAAAGCACAGGTCGAGGTCATCTGCCCGCTAC
GACGATGTGGAAAAGCAGCAGAGGAAAAGCCGAGCCATCGTCTCCATACC
GAACACCATCAAACTGAGTATGCTCAACAGCGGACTGCTGTCGTTTGAAA
GGATAAAGCTCGAGGCACGAGATGAGAACAATTCTCTGTCCAAGACGATA
CCCAACGGACCCATCGATATCAGGCATTTTCTCAAGCTCTGCGATCTGCG
CAGAAAGTTCCCGGTCCTCTACAAACTGGAATTCCAAACTGCGGCCAAGG
TGGAGAGTAACACCTGTCGGCATGCCTTGAAGAAGAACAACCTGGAGAAG
AACCAGAATCCCAAGTGCATTCCCTATGACTACAATCGGGTGGTGCTGGA
GAAGGTGGGTGGCCTGCAGGACTCGGACTATGTGAACGCTTCCTATGTGG
ACAGCCTGCTCAAGCCGAACGCGTACATAGTGACACAGGGACCTGTCGAG
GAGACGGTCCAGGCCTACTGGCGAATGGTTTGGCAGGAAAACATCAGTGC
CATTGTTATGCTGACGAAGACCTTTGACTTCGCCAAGGTAATGTGCCACC
AGTACTGGCCACCCAACATGGAGGTTCACGAGCAGTACGGCGATATCTTC
ATCAATATCGTCAGGGAGGAGCAACTGGCCAATTTCCATATACGAACCTT
CAGGCTCTACAAGATGAACGAAAAGCAGGAGGTGACCGACGAGAGGTTGA
TCCTTCAGTTCCACTACACCGAATGGTACTCCCACTCGTGTCCCTTTTCC
AATGCCCTGTTGGAGTTCCGGAGGAGAGTTCGCCTTGTCGTGGGCAACAT
CATCAAGGACGAGGACGACATGAGGGGTCCCATCTTGGTCCACTGCAGCG
ATGGCGGCGGCAGATCGGGAGTCTATATGTCCATCGATGCCAACCTGGAG
CTGGCGGAGGAGGAGGAGTGCTTCAATGTCTTCGGCTACCTCAAGAAGTT
AAGGCAATCGCGGAAGGGTCTGGTGGAGAATGTGGAGCAATATAAGTTTA
TATACGACACCCTGGAGGAGCACATTATTTGCGGCAAGACCTGGTTCCCG
GTCTCGGAACTTTCCGATCGCTTAAAGGCCAAGGCCAGGAGGAATTCGGG
CACTAAAATGAACGAATATCAGGCGGAGTACGATCAGATCTGCAAGCAAA
CCCCACGATTCACCATAGGCGATTGCGCCGGCGGTCACCGGGCGGATAAT
CGCGAGAAGAACAGGGATGTCCTGTGCGTACCACCCGATAACTTCCGGCC
CTACCTGACCTCCTTCCAGGGCAATGCCTTTACGGACTACATAAACTCGG
TGTTCGTGGACGGGTATACCAAGCCCAGGGAGTACATAGTCACTGAATGG
CCCATGAAGCATACGCTGGGTGAGTTCTGGTCCCTGGTCTACGACCAGGA
GTGCTCGGCCGTTGTAGTCTTGTGCCAGCCGCCCTCGCAATCGCAGCAGT
ATCCCTCGTTCTGGCCCAACAAATCGAAGATGGAGAAGTACGGACCGGTG
TTCTCCGTGCACTATGTGATGTCCAAGAGCTATACGAACATCAAGCAATG
GGAGTTCAAGATCAACAAGAAGATCGTCTCGCTGACCGAAATGATGGCCG
GGGTGAAGGCCCCGACACGAACCGTCCAACTGTTCCAGCTGACCTGCTGG
CCCATGGGTCACAAGGTGCCCAGCTCGACGAACTCGCTGGTCTACCTGAT
GAACATGGTCGAGATCTGGCGGAACAAGGTCGACTACGGGCCTGTGTGCG
TTGTCTCGCCCGATGGTCGCAGTCGTGCCGGTGTTTACTGTGCCGCGAAT
GCGTGCATCGAGCAGGTCATCCAGCACGGCGAGGTCGATGTCTTCCAAGC
GGTGAAGACTGTGCGCCGGCATCGTCCTCAGCTAGTCGAGAATATGACGG
AGTACAAGTACTGCTACGATCTGGTGCTCCACTATGTCCTCCACTTCCTC
AACAAGAAGGAGTGAAAGCTTTCTAGACCAT
BS13229.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptp36E-RC | 2049 | CG7180-PC | 1..2049 | 17..2065 | 10245 | 100 | Plus |
| Ptp36E-RB | 2049 | CG7180-PB | 1..2049 | 17..2065 | 10245 | 100 | Plus |
| Ptp36E-RA | 2049 | CG7180-PA | 1..2049 | 17..2065 | 10245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptp36E-RC | 4012 | CG7180-RC | 891..2940 | 17..2066 | 10250 | 100 | Plus |
| Ptp36E-RB | 3524 | CG7180-RB | 291..2340 | 17..2066 | 10250 | 100 | Plus |
| Ptp36E-RA | 3415 | CG7180-RA | 294..2343 | 17..2066 | 10250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18182068..18184117 | 2066..17 | 10250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:10:57 has no hits.
BS13229.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:37 Download gff for
BS13229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7180-RA | 292..2339 | 17..2064 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:00 Download gff for
BS13229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7180-RA | 294..2341 | 17..2064 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:09:48 Download gff for
BS13229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7180-RA | 292..2339 | 17..2064 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:45 Download gff for
BS13229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptp36E-RA | 294..2341 | 17..2064 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:45 Download gff for
BS13229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18182070..18184117 | 17..2064 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:00 Download gff for
BS13229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18182070..18184117 | 17..2064 | 100 | | Minus |
BS13229.3prime Sequence
745 bp (685 high quality bases) assembled on 2006-10-13
> BS13229.3prime
ATGGTCTAGAAAGCTTTCACTCCTTCTTGTTGAGGAAGTGGAGGACATAG
TGGAGCACCAGATCGTAGCAGTACTTGTACTCCGTCATATTCTCGACTAG
CTGAGGACGATGCCGGCGCACAGTCTTCACCGCTTGGAAGACATCGACCT
CGCCGTGCTGGATGACCTGCTCGATGCACGCATTCGCGGCACAGTAAACA
CCGGCACGACTGCGACCATCGGGCGAGACAACGCACACAGGCCCGTAGTC
GACCTTGTTCCGCCAGATCTCGACCATGTTCATCAGGTAGACCAGCGAGT
TCGTCGAGCTGGGCACCTTGTGACCCATGGGCCAGCAGGTCAGCTGGAAC
AGTTGGACGGTTCGTGTCGGGGCCTTCACCCCGGCCATCATTTCGGTCAG
CGAGACGATCTTCTTGTTGATCTTGAACTCCCATTGCTTGATGTTCGTAT
AGCTCTTGGACATCACATAGTGCACGGAGAACACCGGTCCGTACTTCTCC
ATCTTCGATTTGTTGGGCCAGAACGAGGGATACTGCTGCGATTGCGAGGG
CGGCTGGCACAAGACTACAACGGCCGAGCACTCCTGGTCGTAGACCAGGG
ACCAGAACTCACCCAGCGTATGCTTCATGGGCCATTCAGTGACTATGTAC
TCCCTGGGCTTGGTATACCCGTCCACGAACACCGAGTTTATGTAGTCCGT
AAAGGCATTGCCCTGGAAGGAAGTCAGGTAGGGCCGGAAGTTATC
BS13229.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7180-PA | 2049 | CG7180-RA | 1321..2049 | 745..17 | 3620 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:09:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptp36E-RC | 4012 | CG7180-RC | 2211..2940 | 745..16 | 3635 | 99.9 | Minus |
| Ptp36E-RB | 3524 | CG7180-RB | 1611..2340 | 745..16 | 3635 | 99.9 | Minus |
| Ptp36E-RA | 3415 | CG7180-RA | 1614..2343 | 745..16 | 3635 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:09:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18182068..18182797 | 16..745 | 3635 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-05 02:09:55 has no hits.
BS13229.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:43 Download gff for
BS13229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7180-PA | 1321..2049 | 17..745 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:08:32 Download gff for
BS13229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7180-RA | 1614..2343 | 16..745 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:03:00 Download gff for
BS13229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptp36E-RA | 1614..2343 | 16..745 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:03:00 Download gff for
BS13229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18182068..18182797 | 16..745 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:08:32 Download gff for
BS13229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18182068..18182797 | 16..745 | 99 | | Plus |
BS13229.5prime Sequence
666 bp (613 high quality bases) assembled on 2006-10-13
> BS13229.5prime
GAAGTTATCAGTCGACATGACGGCGGCCACGGGTGGTGGGAGTAGTGGGG
CGGGGGGTGGTAAGACTGGAAAGCACAGGTCGAGGTCATCTGCCCGCTAC
GACGATGTGGAAAAGCAGCAGAGGAAAAGCCGAGCCATCGTCTCCATACC
GAACACCATCAAACTGAGTATGCTCAACAGCGGACTGCTGTCGTTTGAAA
GGATAAAGCTCGAGGCACGAGATGAGAACAATTCTCTGTCCAAGACGATA
CCCAACGGACCCATCGATATCAGGCATTTTCTCAAGCTCTGCGATCTGCG
CAGAAAGTTCCCGGTCCTCTACAAACTGGAATTCCAAACTGCGGCCAAGG
TGGAGAGTAACACCTGTCGGCATGCCTTGAAGAAGAACAACCTGGAGAAG
AACCAGAATCCCAAGTGCATTCCCTATGACTACAATCGGGTGGTGCTGGA
GAAGGTGGGTGGCCTGCAGGACTCGGACTATGTGAACGCTTCCTATGTGG
ACAGCCTGCTCAAGCCGAACGCGTACATAGTGACACAGGGACCTGTCGAG
GAGACGGTCCAGGCCTACTGGCGAATGGTTTGGCAGGAAAACATCAGTGC
CATTGTTATGCTGACGAAGACCTTTGACTTCGCCAAGGTAATGTGCCACC
ATTACTGGCCACCCAA
BS13229.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:45:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7180-PA | 2049 | CG7180-RA | 1..650 | 17..666 | 3225 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptp36E-RC | 4012 | CG7180-RC | 891..1540 | 17..666 | 3235 | 99.8 | Plus |
| Ptp36E-RB | 3524 | CG7180-RB | 291..940 | 17..666 | 3235 | 99.8 | Plus |
| Ptp36E-RA | 3415 | CG7180-RA | 294..943 | 17..666 | 3235 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18183468..18184117 | 666..17 | 3235 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-10 18:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 502..547 | 357..402 | 113 | 71.7 | Plus |
BS13229.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:43 Download gff for
BS13229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7180-PA | 1..648 | 17..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:51:19 Download gff for
BS13229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7180-RA | 287..941 | 10..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:40:51 Download gff for
BS13229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptp36E-RA | 287..941 | 10..664 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:40:51 Download gff for
BS13229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18183470..18184124 | 10..664 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:51:19 Download gff for
BS13229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18183470..18184124 | 10..664 | 99 | | Minus |
BS13229.pep Sequence
Translation from 16 to 2064
> BS13229.pep
MTAATGGGSSGAGGGKTGKHRSRSSARYDDVEKQQRKSRAIVSIPNTIKL
SMLNSGLLSFERIKLEARDENNSLSKTIPNGPIDIRHFLKLCDLRRKFPV
LYKLEFQTAAKVESNTCRHALKKNNLEKNQNPKCIPYDYNRVVLEKVGGL
QDSDYVNASYVDSLLKPNAYIVTQGPVEETVQAYWRMVWQENISAIVMLT
KTFDFAKVMCHQYWPPNMEVHEQYGDIFINIVREEQLANFHIRTFRLYKM
NEKQEVTDERLILQFHYTEWYSHSCPFSNALLEFRRRVRLVVGNIIKDED
DMRGPILVHCSDGGGRSGVYMSIDANLELAEEEECFNVFGYLKKLRQSRK
GLVENVEQYKFIYDTLEEHIICGKTWFPVSELSDRLKAKARRNSGTKMNE
YQAEYDQICKQTPRFTIGDCAGGHRADNREKNRDVLCVPPDNFRPYLTSF
QGNAFTDYINSVFVDGYTKPREYIVTEWPMKHTLGEFWSLVYDQECSAVV
VLCQPPSQSQQYPSFWPNKSKMEKYGPVFSVHYVMSKSYTNIKQWEFKIN
KKIVSLTEMMAGVKAPTRTVQLFQLTCWPMGHKVPSSTNSLVYLMNMVEI
WRNKVDYGPVCVVSPDGRSRAGVYCAANACIEQVIQHGEVDVFQAVKTVR
RHRPQLVENMTEYKYCYDLVLHYVLHFLNKKE*
BS13229.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptp36E-PC | 682 | CG7180-PC | 1..682 | 1..682 | 3651 | 100 | Plus |
| Ptp36E-PB | 682 | CG7180-PB | 1..682 | 1..682 | 3651 | 100 | Plus |
| Ptp36E-PA | 682 | CG7180-PA | 1..682 | 1..682 | 3651 | 100 | Plus |
| Lar-PD | 1912 | CG10443-PD | 1332..1909 | 78..679 | 740 | 30.4 | Plus |
| Lar-PH | 1927 | CG10443-PH | 1347..1924 | 78..679 | 740 | 30.4 | Plus |
