Clone Sequence Records
BS13230.complete Sequence
1568 bp assembled on 2009-12-07
GenBank Submission: KX800675
> BS13230.complete
GAAGTTATCAGTCGACATGCCGATCAACTTTAATATTGGCTTGCTGGGAC
ATGTTGACAGTGGCAAGACCACCTTGGCCAAGGCTTTAAGTTCGATTTCC
AGCACGGCCGCCTTCGACAAGAATCCGCAATCAGTGGAGCGAGGCATAAC
TTTGGATTTGGGCTTTAGTGGACTTTTGGTGGATGCTCCTGCGCACTTAC
CTCAAGGAGAACAGCTCCAGTTCACCTTTGTCGACTGCCCCGGCCATGCA
AGTCTTATACGCACTATTATAGGAGGTGCCCAGATCATTGATCTCATGCT
CCTGGTGGTGGACGCCCAAAAAGGCAAACAAACCCAAACAGCAGAATGCC
TCATTATCGGGGAGCTGCTGCAGAAAAAGCTGATTGTAGTGATCAACAAA
ATAGATGTTTATCCAGAAAATCAGAGGGCGTCCAAGCTGGAGAAGCTACG
CTTGCGGCTCGCAAAAACTTTGGAAGCCACCACATTCGGTGGTCAAGTGC
CCATATGTGCTGTGTCTGCTTTGCAAGGAACACATATCGCGGAGTTGCGA
GAAGTACTTAGAGAAGCCTACTTTCAGCCGCAGAGAAACCTAGCCGATCC
ACTCTTCATGTACGTTGATCATTGCTTCGGAATAAAGGGCCAGGGAACCG
TTTGCACTGGCACTCTGCTCCAGGGAAAGGTTCAGGTAAACAATGTGATT
GAGCTGCCAGCTCTTGGGGAGCAAAGGAAAGTGAAGTCCATACAGATGTT
TCGCAAAAACGTGACCAGCGCCTCTATGGGCGACAGAATTGGGCTTTGCG
TGACACAATTCAATGCAAAGCTGCTGGAGCGTGGAATCATTACCCAACCG
GGTTACCTGAAACCCATCTATGCCGTGTGTCTACAGTTTAAACCCATCCG
CTATTACAAGGAAGTCATAAAATCTATGAGGAAGATGCACATCTCCGTGG
GACACAACACAGTGATGGCCAATGTAACTTTGTTTCGGGATACGGACGGC
ACAACTTCCACTTTCCAACTGGACAAAGAATACGAGTATATGGAGGACGT
CCAGCCTGCGGAGGTTCAACATAATGATGTGATCTACGCTCTGTTGCAAT
TCGAAAGTCCTGTTCTATCTCCGCCACATTCAACGCTGATTGCTTCGAAG
CTGGACATGGATGTCCATAGTACCAGTTGTAGATTGGCGTTTTGGGGACG
CATTGCCTGGCAGACGCACAGTTCCAAATACTTTCAGGAAGAACTGCCGA
AACTGCGGATTTTCAAGCGCAAACAGAAAGTGGGAAGCATTCAGCGAGTG
GTCAATAGCAGCGAAGTGATAGTTCAAAACCTTTTTAAGGACGCCAAACG
TGATTTGTACGTCGGCAAGAATGTGGAGCTCTCGACGGGAGAGAAGGGTC
GCATTGAACGCACCTTTGGCCAGACATCCAAAGTGGCTATAACTTTTCAG
GACGCCCTATCTCCTGAAACAATAAGCAATGTGAAGAATGTTAAGGTTTT
GCTGAACTGTAAGAAATATGTGTTCAATAAACAGGCAGGCTTGTTTCAAT
GAAAGCTTTCTAGACCAT
BS13230.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EfSec-RA | 1536 | CG9841-PA | 1..1536 | 17..1552 | 7680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EfSec-RA | 1613 | CG9841-RA | 71..1606 | 17..1552 | 7680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21384559..21385837 | 1552..274 | 6395 | 100 | Minus |
| 2R | 25286936 | 2R | 21385891..21386151 | 277..17 | 1305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:56:28 has no hits.
BS13230.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:24 Download gff for
BS13230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 65..1599 | 17..1551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:49 Download gff for
BS13230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 71..1605 | 17..1551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:26 Download gff for
BS13230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 65..1599 | 17..1551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:15 Download gff for
BS13230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 71..1605 | 17..1551 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:15 Download gff for
BS13230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21384560..21385835 | 276..1551 | 100 | <- | Minus |
| 2R | 21385893..21386151 | 17..275 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:49 Download gff for
BS13230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17272065..17273340 | 276..1551 | 100 | <- | Minus |
| arm_2R | 17273398..17273656 | 17..275 | 100 | | Minus |
BS13230.3prime Sequence
548 bp (501 high quality bases) assembled on 2006-10-13
> BS13230.3prime
ATGGTCTAGAAAGCTTTCATTGAAACAAGCCTGCCTGTTTATTGAACACA
TATTTCTTACAGTTCAGCAAAACCTTAACATTCTTCACATTGCTTATTGT
TTCAGGAGATAGGGCGTCCTGAAAAGTTATAGCCACTTTGGATGTCTGGC
CAAAGGTGCGTTCAATGCGACCCTTCTCTCCCGTCGAGAGCTCCACATTC
TTGCCGACGTACAAATCACGTTTGGCGTCCTTAAAAAGGTTTTGAACTAT
CACTTCGCTGCTATTGACCACTCGCTGAATGCTTCCCACTTTCTGTTTGC
GCTTGAAAATCCGCAGTTTCGGCAGTTCTTCCTGAAAGTATTTGGAACTG
TGCGTCTGCCAGGCAATGCGTCCCCAAAACGCCAATCTACAACTGGTACT
ATGGACATCCATGTCCAGCTTCGAAGCAATCAGCGTTGAATGTGGCGGAG
ATAGAACAGGACTTTCGAATTGCAACAGAGCGTAGATCACATCATTATGT
TGAACCTCCGCAGGCTGGACGTCCTCCATATACTCGTATTCTTTGTCC
BS13230.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:45:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9841-PA | 1536 | EfSec-RA | 1005..1536 | 548..17 | 2660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:49:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EfSec-RA | 1613 | CG9841-RA | 1075..1606 | 548..17 | 2660 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:49:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21384559..21385090 | 17..548 | 2660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:49:47 has no hits.
BS13230.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:43 Download gff for
BS13230.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9841-PA | 1005..1536 | 17..548 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:49:18 Download gff for
BS13230.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 1075..1613 | 11..548 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:30:09 Download gff for
BS13230.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 1075..1613 | 11..548 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:30:09 Download gff for
BS13230.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21384552..21385090 | 11..548 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:49:18 Download gff for
BS13230.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17272057..17272595 | 11..548 | 99 | | Plus |
BS13230.5prime Sequence
563 bp (497 high quality bases) assembled on 2006-10-13
> BS13230.5prime
GAAGTTATCAGTCGACATGCCGATCAACTTTAATATTGGCTTGCTGGGAC
ATGTTGACAGTGGCAAGACCACCTTGGCCAAGGCTTTAAGTTCGATTTCC
AGCACGGCCGCCTTCGACAAGAATCCGCAATCAGTGGAGCGAGGCATAAC
TTTGGATTTGGGCTTTAGTGGACTTTTGGTGGATGCTCCTGCGCACTTAC
CTCAAGGAGAACAGCTCCAGTTCACCTTTGTCGACTGCCCCGGCCATGCA
AGTCTTATACGCACTATTATAGGAGGTGCCCAGATCATTGATCTCATGCT
CCTGGTGGTGGACGCCCAAAAAGGCAAACAAACCCAAACAGCAGAATGCC
TCATTATCGGGGAGCTGCTGCAGAAAAAGCTGATTGTAGTGATCAACAAA
ATAGATGTTTATCCAGAAAATCAGAGGGCGTCCAAGCTGGAGAAGCTACG
CTTGCGGCTCGCAAAAACTTTGGAAGCCACCACATTCGGTGGTCAAGTGC
CCATATGTGCTGTGTCTGCTTTGCCAGGAACACATATCGCGGAATTGCGA
GAAGTACTTAAAG
BS13230.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:45:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9841-PA | 1536 | EfSec-RA | 1..544 | 17..560 | 2670 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EfSec-RA | 1613 | CG9841-RA | 71..614 | 17..560 | 2690 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:17:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21385551..21385837 | 560..274 | 1405 | 99.3 | Minus |
| 2R | 25286936 | 2R | 21385891..21386151 | 277..17 | 1305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:17:10 has no hits.
BS13230.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:44 Download gff for
BS13230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9841-PA | 1..547 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:07:17 Download gff for
BS13230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 61..617 | 8..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:10:22 Download gff for
BS13230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 61..617 | 8..563 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:10:22 Download gff for
BS13230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21385548..21385835 | 276..563 | 98 | <- | Minus |
| 2R | 21385893..21386161 | 8..275 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:07:17 Download gff for
BS13230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17273053..17273340 | 276..563 | 98 | <- | Minus |
| arm_2R | 17273398..17273666 | 8..275 | 98 | | Minus |
BS13230.pep Sequence
Translation from 16 to 1551
> BS13230.pep
MPINFNIGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITLDLGF
SGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDA
QKGKQTQTAECLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAK
TLEATTFGGQVPICAVSALQGTHIAELREVLREAYFQPQRNLADPLFMYV
DHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVT
SASMGDRIGLCVTQFNAKLLERGIITQPGYLKPIYAVCLQFKPIRYYKEV
IKSMRKMHISVGHNTVMANVTLFRDTDGTTSTFQLDKEYEYMEDVQPAEV
QHNDVIYALLQFESPVLSPPHSTLIASKLDMDVHSTSCRLAFWGRIAWQT
HSSKYFQEELPKLRIFKRKQKVGSIQRVVNSSEVIVQNLFKDAKRDLYVG
KNVELSTGEKGRIERTFGQTSKVAITFQDALSPETISNVKNVKVLLNCKK
YVFNKQAGLFQ*
BS13230.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:45:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EfSec-PA | 511 | CG9841-PA | 1..511 | 1..511 | 2604 | 100 | Plus |
| CG12736-PA | 456 | CG12736-PA | 59..338 | 6..275 | 306 | 29.7 | Plus |
| EfTuM-PB | 489 | CG6050-PB | 84..373 | 6..284 | 263 | 28.7 | Plus |
| EfTuM-PA | 489 | CG6050-PA | 84..373 | 6..284 | 263 | 28.7 | Plus |
| Ef1alpha100E-PD | 462 | CG1873-PD | 6..325 | 3..275 | 205 | 24.6 | Plus |
