Clone Sequence Records
BS13231.3prime Sequence
609 bp (608 high quality bases) assembled on 2006-10-13
> BS13231.3prime
ATGGTCTAGAAAGCTTTCATGCCTTTTCAATGGCATTTGGCACCGTGGTA
GACACGAAGTCATCCACATCGAGGCCATCCTCTCCGGCCAGCCCAGTGCC
ATTACCATCCAACCGGGGACAGTTCTTCTGAACAGTATCGATGAGGAAGG
CCTGGGATACATCGTTGTCTTCCAAGATCTTTCTGGCCGCATCAACCGCT
TCCGCTGAAGGTTCACGCTGACGAGTCAAGATCCAAACAATTTTGAAATT
GGCCAAAGGTGTTACACTGGTGCAGCTGTAGACGACGGCGTATGACTCGT
AATCTGTGCCCAAAACCAGGTAGTTGGCCTTCGTCAATGGCTGCGTCGGG
TAAAAGGCCACGGCCAATTGACCGGGTCCAAGGACCTTGGCCTGTCCAGT
TACATTCGAGGGTTGTCCGGTGAATCGATTGATGGCCGCATTCACCACCG
AAACAGTGCTGTTGTCTATGAGACTGTAGTTGGCGTAGATGCACTTCTTG
CCGATCTCGAAAGCAAATGGATAGGCTGCGTACTCGTACCAGACGCCCAT
ATACGCTTCCGCGTCGAAGGTGTCCAGTAGCTTAACATCTGGGCACTTGC
CAGGAAATG
BS13231.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33126-PA | 675 | NLaz-RA | 83..675 | 609..17 | 2965 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:52:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NLaz-RC | 1149 | CG33126-RC | 247..839 | 609..17 | 2965 | 100 | Minus |
NLaz-RB | 917 | CG33126-RB | 161..753 | 609..17 | 2965 | 100 | Minus |
NLaz-RA | 917 | CG33126-RA | 161..753 | 609..17 | 2965 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:52:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1360147..1360373 | 17..243 | 1135 | 100 | Plus |
2L | 23513712 | 2L | 1360796..1360927 | 423..554 | 660 | 100 | Plus |
2L | 23513712 | 2L | 1360492..1360590 | 244..342 | 495 | 100 | Plus |
2L | 23513712 | 2L | 1360657..1360736 | 343..422 | 400 | 100 | Plus |
2L | 23513712 | 2L | 1361458..1361513 | 554..609 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:52:52 has no hits.
BS13231.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:44 Download gff for
BS13231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33126-PA | 83..675 | 17..609 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:19 Download gff for
BS13231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NLaz-RA | 161..753 | 17..609 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:11 Download gff for
BS13231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NLaz-RA | 161..753 | 17..609 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:11 Download gff for
BS13231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1360147..1360373 | 17..243 | 100 | <- | Plus |
2L | 1360492..1360590 | 244..342 | 100 | <- | Plus |
2L | 1360657..1360736 | 343..422 | 100 | <- | Plus |
2L | 1360796..1360926 | 423..553 | 100 | <- | Plus |
2L | 1361458..1361513 | 554..609 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:19 Download gff for
BS13231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1361458..1361513 | 554..609 | 100 | | Plus |
arm_2L | 1360147..1360373 | 17..243 | 100 | <- | Plus |
arm_2L | 1360492..1360590 | 244..342 | 100 | <- | Plus |
arm_2L | 1360657..1360736 | 343..422 | 100 | <- | Plus |
arm_2L | 1360796..1360926 | 423..553 | 100 | <- | Plus |
BS13231.5prime Sequence
701 bp (637 high quality bases) assembled on 2006-10-13
> BS13231.5prime
GAAGTTATCAGTCGACATGAATCATCACTCGAGTTCGCACCTGTTGCTGC
TTATCTCCGTGGTATTTGGGGCAGTATGGGTGGCCCATGCCCAGGTGCCA
TTTCCTGGCAAGTGCCCAGATGTTAAGCTACTGGACACCTTCGACGCGGA
AGCGTATATGGGCGTCTGGTACGAGTACGCAGCCTATCCATTTGCTTTCG
AGATCGGCAAGAAGTGCATCTACGCCAACTACAGTCTCATAGACAACAGC
ACTGTTTCGGTGGTGAATGCGGCCATCAATCGATTCACCGGACAACCCTC
GAATGTAACTGGACAGGCCAAGGTCCTTGGACCCGGTCAATTGGCCGTGG
CCTTTTACCCGACGCAGCCATTGACGAAGGCCAACTACCTGGTTTTGGGC
ACAGATTACGAGTCATACGCCGTCGTCTACAGCTGCACCAGTGTAACACC
TTTGGCCAATTTCAAAATTGTTTGGATCTTGACTCGTCAGCGTGAACCTT
CAGCGGAAGCGGTTGATGCGGCCAGAAAGATCTTGGAAGACAACGATGTA
TCCCAGGCCTTCCTCATCGATACTGTTCAGAAGAACTGTCCCCGGTTGGA
TGGTAATGGCACTGGGCTGGCCGGAGAGGATGGCCTCGATGTGGATGACT
TCGTGTCTACCACGGTGCCAAATGCCATTTGAAAAAGCATGAAAACTTTC
T
BS13231.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33126-PA | 675 | NLaz-RA | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:21:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NLaz-RC | 1149 | CG33126-RC | 165..839 | 17..692 | 3340 | 99.7 | Plus |
NLaz-RB | 917 | CG33126-RB | 79..753 | 17..692 | 3340 | 99.7 | Plus |
NLaz-RA | 917 | CG33126-RA | 79..753 | 17..692 | 3340 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1360159..1360373 | 679..465 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 1360796..1360927 | 285..154 | 660 | 100 | Minus |
2L | 23513712 | 2L | 1361458..1361596 | 154..16 | 620 | 96.4 | Minus |
2L | 23513712 | 2L | 1360492..1360590 | 464..366 | 495 | 100 | Minus |
2L | 23513712 | 2L | 1360657..1360736 | 365..286 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:21:10 has no hits.
BS13231.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:44 Download gff for
BS13231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33126-PA | 1..675 | 17..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:09 Download gff for
BS13231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NLaz-RA | 75..756 | 9..695 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:41 Download gff for
BS13231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NLaz-RA | 75..756 | 9..695 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:41 Download gff for
BS13231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1360144..1360373 | 465..695 | 98 | <- | Minus |
2L | 1360492..1360590 | 366..464 | 100 | <- | Minus |
2L | 1360657..1360736 | 286..365 | 100 | <- | Minus |
2L | 1360796..1360926 | 155..285 | 100 | <- | Minus |
2L | 1361458..1361578 | 34..154 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:09 Download gff for
BS13231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1360144..1360373 | 465..695 | 98 | <- | Minus |
arm_2L | 1360492..1360590 | 366..464 | 100 | <- | Minus |
arm_2L | 1360657..1360736 | 286..365 | 100 | <- | Minus |
arm_2L | 1360796..1360926 | 155..285 | 100 | <- | Minus |
arm_2L | 1361458..1361578 | 34..154 | 100 | <- | Minus |
BS13231.complete Sequence
707 bp assembled on 2006-11-01
GenBank Submission: FJ637396
> BS13231.complete
GAAGTTATCAGTCGACATGAATCATCACTCGAGTTCGCACCTGTTGCTGC
TTATCTCCGTGGTATTTGGGGCAGTATGGGTGGCCCATGCCCAGGTGCCA
TTTCCTGGCAAGTGCCCAGATGTTAAGCTACTGGACACCTTCGACGCGGA
AGCGTATATGGGCGTCTGGTACGAGTACGCAGCCTATCCATTTGCTTTCG
AGATCGGCAAGAAGTGCATCTACGCCAACTACAGTCTCATAGACAACAGC
ACTGTTTCGGTGGTGAATGCGGCCATCAATCGATTCACCGGACAACCCTC
GAATGTAACTGGACAGGCCAAGGTCCTTGGACCCGGTCAATTGGCCGTGG
CCTTTTACCCGACGCAGCCATTGACGAAGGCCAACTACCTGGTTTTGGGC
ACAGATTACGAGTCATACGCCGTCGTCTACAGCTGCACCAGTGTAACACC
TTTGGCCAATTTCAAAATTGTTTGGATCTTGACTCGTCAGCGTGAACCTT
CAGCGGAAGCGGTTGATGCGGCCAGAAAGATCTTGGAAGACAACGATGTA
TCCCAGGCCTTCCTCATCGATACTGTTCAGAAGAACTGTCCCCGGTTGGA
TGGTAATGGCACTGGGCTGGCCGGAGAGGATGGCCTCGATGTGGATGACT
TCGTGTCTACCACGGTGCCAAATGCCATTGAAAAGGCATGAAAGCTTTCT
AGACCAT
BS13231.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NLaz-RC | 675 | CG33126-PC | 1..675 | 17..691 | 3375 | 100 | Plus |
NLaz-RB | 738 | CG33126-PB | 1..675 | 17..691 | 3375 | 100 | Plus |
NLaz-RA | 675 | CG33126-PA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NLaz-RC | 1149 | CG33126-RC | 165..839 | 17..691 | 3375 | 100 | Plus |
NLaz-RB | 917 | CG33126-RB | 79..753 | 17..691 | 3375 | 100 | Plus |
NLaz-RA | 917 | CG33126-RA | 79..753 | 17..691 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1360147..1360373 | 691..465 | 1135 | 100 | Minus |
2L | 23513712 | 2L | 1360796..1360927 | 285..154 | 660 | 100 | Minus |
2L | 23513712 | 2L | 1361458..1361596 | 154..16 | 620 | 96.4 | Minus |
2L | 23513712 | 2L | 1360492..1360590 | 464..366 | 495 | 100 | Minus |
2L | 23513712 | 2L | 1360657..1360736 | 365..286 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:10:32 has no hits.
BS13231.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:01 Download gff for
BS13231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NLaz-RA | 1..675 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:25 Download gff for
BS13231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NLaz-RA | 72..750 | 9..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:02 Download gff for
BS13231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NLaz-RA | 79..752 | 17..690 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:02 Download gff for
BS13231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NLaz-RA | 72..750 | 9..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:51 Download gff for
BS13231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NLaz-RA | 79..752 | 17..690 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:51 Download gff for
BS13231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1360148..1360373 | 465..690 | 100 | <- | Minus |
2L | 1360492..1360590 | 366..464 | 100 | <- | Minus |
2L | 1360657..1360736 | 286..365 | 100 | <- | Minus |
2L | 1360796..1360926 | 155..285 | 100 | <- | Minus |
2L | 1361458..1361578 | 34..154 | 100 | <- | Minus |
2L | 1361641..1361657 | 17..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:02 Download gff for
BS13231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1360148..1360373 | 465..690 | 100 | <- | Minus |
arm_2L | 1360492..1360590 | 366..464 | 100 | <- | Minus |
arm_2L | 1360657..1360736 | 286..365 | 100 | <- | Minus |
arm_2L | 1360796..1360926 | 155..285 | 100 | <- | Minus |
arm_2L | 1361458..1361578 | 34..154 | 100 | <- | Minus |
arm_2L | 1361641..1361657 | 17..33 | 100 | | Minus |
BS13231.pep Sequence
Translation from 16 to 690
> BS13231.pep
MNHHSSSHLLLLISVVFGAVWVAHAQVPFPGKCPDVKLLDTFDAEAYMGV
WYEYAAYPFAFEIGKKCIYANYSLIDNSTVSVVNAAINRFTGQPSNVTGQ
AKVLGPGQLAVAFYPTQPLTKANYLVLGTDYESYAVVYSCTSVTPLANFK
IVWILTRQREPSAEAVDAARKILEDNDVSQAFLIDTVQKNCPRLDGNGTG
LAGEDGLDVDDFVSTTVPNAIEKA*
BS13231.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NLaz-PC | 224 | CG33126-PC | 1..224 | 1..224 | 1170 | 100 | Plus |
NLaz-PA | 224 | CG33126-PA | 1..224 | 1..224 | 1170 | 100 | Plus |
NLaz-PB | 245 | CG33126-PB | 1..224 | 1..224 | 1170 | 100 | Plus |
GLaz-PF | 212 | CG4604-PF | 31..209 | 31..192 | 153 | 26.3 | Plus |
GLaz-PE | 212 | CG4604-PE | 31..209 | 31..192 | 153 | 26.3 | Plus |