Clone BS13231 Report

Search the DGRC for BS13231

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptNLaz-RA
Protein status:BS13231.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13231.3prime Sequence

609 bp (608 high quality bases) assembled on 2006-10-13

> BS13231.3prime
ATGGTCTAGAAAGCTTTCATGCCTTTTCAATGGCATTTGGCACCGTGGTA
GACACGAAGTCATCCACATCGAGGCCATCCTCTCCGGCCAGCCCAGTGCC
ATTACCATCCAACCGGGGACAGTTCTTCTGAACAGTATCGATGAGGAAGG
CCTGGGATACATCGTTGTCTTCCAAGATCTTTCTGGCCGCATCAACCGCT
TCCGCTGAAGGTTCACGCTGACGAGTCAAGATCCAAACAATTTTGAAATT
GGCCAAAGGTGTTACACTGGTGCAGCTGTAGACGACGGCGTATGACTCGT
AATCTGTGCCCAAAACCAGGTAGTTGGCCTTCGTCAATGGCTGCGTCGGG
TAAAAGGCCACGGCCAATTGACCGGGTCCAAGGACCTTGGCCTGTCCAGT
TACATTCGAGGGTTGTCCGGTGAATCGATTGATGGCCGCATTCACCACCG
AAACAGTGCTGTTGTCTATGAGACTGTAGTTGGCGTAGATGCACTTCTTG
CCGATCTCGAAAGCAAATGGATAGGCTGCGTACTCGTACCAGACGCCCAT
ATACGCTTCCGCGTCGAAGGTGTCCAGTAGCTTAACATCTGGGCACTTGC
CAGGAAATG

BS13231.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG33126-PA 675 NLaz-RA 83..675 609..17 2965 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
NLaz-RC 1149 CG33126-RC 247..839 609..17 2965 100 Minus
NLaz-RB 917 CG33126-RB 161..753 609..17 2965 100 Minus
NLaz-RA 917 CG33126-RA 161..753 609..17 2965 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1360147..1360373 17..243 1135 100 Plus
2L 23513712 2L 1360796..1360927 423..554 660 100 Plus
2L 23513712 2L 1360492..1360590 244..342 495 100 Plus
2L 23513712 2L 1360657..1360736 343..422 400 100 Plus
2L 23513712 2L 1361458..1361513 554..609 280 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:52:52 has no hits.

BS13231.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:44 Download gff for BS13231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33126-PA 83..675 17..609 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:19 Download gff for BS13231.3prime
Subject Subject Range Query Range Percent Splice Strand
NLaz-RA 161..753 17..609 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:11 Download gff for BS13231.3prime
Subject Subject Range Query Range Percent Splice Strand
NLaz-RA 161..753 17..609 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:11 Download gff for BS13231.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1360147..1360373 17..243 100 <- Plus
2L 1360492..1360590 244..342 100 <- Plus
2L 1360657..1360736 343..422 100 <- Plus
2L 1360796..1360926 423..553 100 <- Plus
2L 1361458..1361513 554..609 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:19 Download gff for BS13231.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1361458..1361513 554..609 100   Plus
arm_2L 1360147..1360373 17..243 100 <- Plus
arm_2L 1360492..1360590 244..342 100 <- Plus
arm_2L 1360657..1360736 343..422 100 <- Plus
arm_2L 1360796..1360926 423..553 100 <- Plus

BS13231.5prime Sequence

701 bp (637 high quality bases) assembled on 2006-10-13

> BS13231.5prime
GAAGTTATCAGTCGACATGAATCATCACTCGAGTTCGCACCTGTTGCTGC
TTATCTCCGTGGTATTTGGGGCAGTATGGGTGGCCCATGCCCAGGTGCCA
TTTCCTGGCAAGTGCCCAGATGTTAAGCTACTGGACACCTTCGACGCGGA
AGCGTATATGGGCGTCTGGTACGAGTACGCAGCCTATCCATTTGCTTTCG
AGATCGGCAAGAAGTGCATCTACGCCAACTACAGTCTCATAGACAACAGC
ACTGTTTCGGTGGTGAATGCGGCCATCAATCGATTCACCGGACAACCCTC
GAATGTAACTGGACAGGCCAAGGTCCTTGGACCCGGTCAATTGGCCGTGG
CCTTTTACCCGACGCAGCCATTGACGAAGGCCAACTACCTGGTTTTGGGC
ACAGATTACGAGTCATACGCCGTCGTCTACAGCTGCACCAGTGTAACACC
TTTGGCCAATTTCAAAATTGTTTGGATCTTGACTCGTCAGCGTGAACCTT
CAGCGGAAGCGGTTGATGCGGCCAGAAAGATCTTGGAAGACAACGATGTA
TCCCAGGCCTTCCTCATCGATACTGTTCAGAAGAACTGTCCCCGGTTGGA
TGGTAATGGCACTGGGCTGGCCGGAGAGGATGGCCTCGATGTGGATGACT
TCGTGTCTACCACGGTGCCAAATGCCATTTGAAAAAGCATGAAAACTTTC
T

BS13231.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG33126-PA 675 NLaz-RA 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
NLaz-RC 1149 CG33126-RC 165..839 17..692 3340 99.7 Plus
NLaz-RB 917 CG33126-RB 79..753 17..692 3340 99.7 Plus
NLaz-RA 917 CG33126-RA 79..753 17..692 3340 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1360159..1360373 679..465 1075 100 Minus
2L 23513712 2L 1360796..1360927 285..154 660 100 Minus
2L 23513712 2L 1361458..1361596 154..16 620 96.4 Minus
2L 23513712 2L 1360492..1360590 464..366 495 100 Minus
2L 23513712 2L 1360657..1360736 365..286 400 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:21:10 has no hits.

BS13231.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:44 Download gff for BS13231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33126-PA 1..675 17..692 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:09 Download gff for BS13231.5prime
Subject Subject Range Query Range Percent Splice Strand
NLaz-RA 75..756 9..695 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:41 Download gff for BS13231.5prime
Subject Subject Range Query Range Percent Splice Strand
NLaz-RA 75..756 9..695 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:41 Download gff for BS13231.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1360144..1360373 465..695 98 <- Minus
2L 1360492..1360590 366..464 100 <- Minus
2L 1360657..1360736 286..365 100 <- Minus
2L 1360796..1360926 155..285 100 <- Minus
2L 1361458..1361578 34..154 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:09 Download gff for BS13231.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1360144..1360373 465..695 98 <- Minus
arm_2L 1360492..1360590 366..464 100 <- Minus
arm_2L 1360657..1360736 286..365 100 <- Minus
arm_2L 1360796..1360926 155..285 100 <- Minus
arm_2L 1361458..1361578 34..154 100 <- Minus

BS13231.complete Sequence

707 bp assembled on 2006-11-01

GenBank Submission: FJ637396

> BS13231.complete
GAAGTTATCAGTCGACATGAATCATCACTCGAGTTCGCACCTGTTGCTGC
TTATCTCCGTGGTATTTGGGGCAGTATGGGTGGCCCATGCCCAGGTGCCA
TTTCCTGGCAAGTGCCCAGATGTTAAGCTACTGGACACCTTCGACGCGGA
AGCGTATATGGGCGTCTGGTACGAGTACGCAGCCTATCCATTTGCTTTCG
AGATCGGCAAGAAGTGCATCTACGCCAACTACAGTCTCATAGACAACAGC
ACTGTTTCGGTGGTGAATGCGGCCATCAATCGATTCACCGGACAACCCTC
GAATGTAACTGGACAGGCCAAGGTCCTTGGACCCGGTCAATTGGCCGTGG
CCTTTTACCCGACGCAGCCATTGACGAAGGCCAACTACCTGGTTTTGGGC
ACAGATTACGAGTCATACGCCGTCGTCTACAGCTGCACCAGTGTAACACC
TTTGGCCAATTTCAAAATTGTTTGGATCTTGACTCGTCAGCGTGAACCTT
CAGCGGAAGCGGTTGATGCGGCCAGAAAGATCTTGGAAGACAACGATGTA
TCCCAGGCCTTCCTCATCGATACTGTTCAGAAGAACTGTCCCCGGTTGGA
TGGTAATGGCACTGGGCTGGCCGGAGAGGATGGCCTCGATGTGGATGACT
TCGTGTCTACCACGGTGCCAAATGCCATTGAAAAGGCATGAAAGCTTTCT
AGACCAT

BS13231.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
NLaz-RC 675 CG33126-PC 1..675 17..691 3375 100 Plus
NLaz-RB 738 CG33126-PB 1..675 17..691 3375 100 Plus
NLaz-RA 675 CG33126-PA 1..675 17..691 3375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
NLaz-RC 1149 CG33126-RC 165..839 17..691 3375 100 Plus
NLaz-RB 917 CG33126-RB 79..753 17..691 3375 100 Plus
NLaz-RA 917 CG33126-RA 79..753 17..691 3375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1360147..1360373 691..465 1135 100 Minus
2L 23513712 2L 1360796..1360927 285..154 660 100 Minus
2L 23513712 2L 1361458..1361596 154..16 620 96.4 Minus
2L 23513712 2L 1360492..1360590 464..366 495 100 Minus
2L 23513712 2L 1360657..1360736 365..286 400 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:10:32 has no hits.

BS13231.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:01 Download gff for BS13231.complete
Subject Subject Range Query Range Percent Splice Strand
NLaz-RA 1..675 17..691 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:25 Download gff for BS13231.complete
Subject Subject Range Query Range Percent Splice Strand
NLaz-RA 72..750 9..691 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:02 Download gff for BS13231.complete
Subject Subject Range Query Range Percent Splice Strand
NLaz-RA 79..752 17..690 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:02 Download gff for BS13231.complete
Subject Subject Range Query Range Percent Splice Strand
NLaz-RA 72..750 9..691 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:51 Download gff for BS13231.complete
Subject Subject Range Query Range Percent Splice Strand
NLaz-RA 79..752 17..690 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:51 Download gff for BS13231.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1360148..1360373 465..690 100 <- Minus
2L 1360492..1360590 366..464 100 <- Minus
2L 1360657..1360736 286..365 100 <- Minus
2L 1360796..1360926 155..285 100 <- Minus
2L 1361458..1361578 34..154 100 <- Minus
2L 1361641..1361657 17..33 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:02 Download gff for BS13231.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1360148..1360373 465..690 100 <- Minus
arm_2L 1360492..1360590 366..464 100 <- Minus
arm_2L 1360657..1360736 286..365 100 <- Minus
arm_2L 1360796..1360926 155..285 100 <- Minus
arm_2L 1361458..1361578 34..154 100 <- Minus
arm_2L 1361641..1361657 17..33 100   Minus

BS13231.pep Sequence

Translation from 16 to 690

> BS13231.pep
MNHHSSSHLLLLISVVFGAVWVAHAQVPFPGKCPDVKLLDTFDAEAYMGV
WYEYAAYPFAFEIGKKCIYANYSLIDNSTVSVVNAAINRFTGQPSNVTGQ
AKVLGPGQLAVAFYPTQPLTKANYLVLGTDYESYAVVYSCTSVTPLANFK
IVWILTRQREPSAEAVDAARKILEDNDVSQAFLIDTVQKNCPRLDGNGTG
LAGEDGLDVDDFVSTTVPNAIEKA*

BS13231.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
NLaz-PC 224 CG33126-PC 1..224 1..224 1170 100 Plus
NLaz-PA 224 CG33126-PA 1..224 1..224 1170 100 Plus
NLaz-PB 245 CG33126-PB 1..224 1..224 1170 100 Plus
GLaz-PF 212 CG4604-PF 31..209 31..192 153 26.3 Plus
GLaz-PE 212 CG4604-PE 31..209 31..192 153 26.3 Plus