Clone Sequence Records
BS13233.5prime Sequence
558 bp (469 high quality bases) assembled on 2006-10-13
> BS13233.5prime
GAAGTTATCAGTCGACATGTTAGTGAGAAATATTTGCAAGTTTACGCAAG
TTATGGGCAGGTTCCGCGTTGTCGTGAATCCCAGAGATTACTGTCATCTT
GCGCCGCTGAAGAGAAGCCGTTATCACCAACGGTCAGAATTCGGATGTCG
ACCGCTGTGCTCCAATGCTGCGGGCTACGAGGTGTCCTGGGCAGCTCCGC
CCGCTTCTGGCTCTTCCGGTGGAATGTTTTGGGCATTTTCCGCTGCTTTC
ACTCTGAATCTGTTTGGTGGCGCCGACGAAAAAGAGGAAACTCCGGAGGA
AAAACTGATCAAGACCATCAAACGATCAATCCTGTGCATTCAGAGGGAAC
AGTACGACAAGGCCGAGCAAATGCTTCACCTGGCTCTGCGAATGGCGCAG
GATATTCAGAGCAAGGACGGCATCACATATGTGTTTGATCTGATGGCCAA
TTTGGCCATGGAACGCGAGCAGTTTAAGAAGGCGGAAAAAATATTCACGG
ACGTTATGAAACGGCTTTTTTGCCAAGGGTCACACCGAAAAAAGTCCCAA
GAATACTT
BS13233.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15173-PA | 1110 | CG15173-RA | 1..535 | 17..552 | 2515 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:56:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ttc19-RA | 1440 | CG15173-RA | 244..785 | 15..558 | 2595 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:56:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19044370..19044905 | 551..15 | 2560 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:56:09 has no hits.
BS13233.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:45 Download gff for
BS13233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15173-PA | 1..540 | 17..558 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:47:24 Download gff for
BS13233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ttc19-RA | 244..785 | 15..558 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:19:30 Download gff for
BS13233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ttc19-RA | 244..785 | 15..558 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:19:30 Download gff for
BS13233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19044370..19044905 | 15..551 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:47:24 Download gff for
BS13233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19044370..19044905 | 15..551 | 98 | | Minus |
BS13233.complete Sequence
1142 bp assembled on 2009-08-24
GenBank Submission: KX802906
> BS13233.complete
GAAGTTATCAGTCGACATGTTAGTGAGAAATATTTGCAAGTTTACGCAAG
TTATGGGCAGGTTCCGCGTTGTCGTGAATCCCAGAGATTACTGTCATCTT
GCGCCGCTGAAGAGAAGCCGTTATCACCAACGGTCAGAATTCGGATGTCG
ACCGCTGTGCTCCAATGCTGCGGGCTACGAGGTGTCCTGGGCAGCTCCGC
CCGCTTCTGGCTCTTCCGGTGGAATGTTTTGGGCATTTTCCGCTGCTTTC
ACTCTGAATCTGTTTGGTGGCGCCGACGAAAAAGAGGAAACTCCGGAGGA
AAAACTGATCAAGACCATCAAACGATCAATCCTGTGCATTCAGAGGGAAC
AGTACGACAAGGCCGAGCAAATGCTTCACCTGGCTCTGCGAATGGCGCAG
GATATTCAGAGCAAGGACGGCATCACATATGTGTTTGATCTGATGGCCAA
TTTGGCCATGGAACGCGAGCAGTTTAAGAAGGCGGAGAAGATATTCACGG
ACGTTATGAAACGGCTTTTTGCCGAGGGTCACACCGAAGAGAGTCCCAAG
ATACTTCACATCAGCTCCAAGATAGCACACATGTCTCAGCTGCAAGGGGA
TCTGGAAAAGAGCTTTCAAGGGTTCACTTGGACCTTGCAGCAGTTGGCTA
AGCTACTGGAGAAAATGCCCGACGACAAGGACATACTGGAGCTGTATGGC
TTGACAAAGAATTGGTTCGGGCAGCTGCTGATGAAGCAGGGAAAATACCT
GGAGGCTAAAAACCTCTTTAAGGAGGCCTTCGACACGCTCATAAATGTTT
ATGGTGCCGTTAACGACGCCTCTGTAACCATCCTAAATAACATCAGTGTG
GCGTACGTAAACCTGGAAAAGTACGCCGAGGCAAGGGAGACCCTTTTGGA
GGCCATGGAGCTGACTAAGGAGCTAAAGGATGCCACCCAGGAAGGCATTC
TGCAGGCAAATCTGGGTTTGGTGTATCTTCGCGAGGGCCTGATGTCGCAG
GCGGAGAACGCTTGCCGACTGGCGTGGAAACTGGGAAAGCAACACCAGAA
TCCCGATGCCGTAGAGCAGGCCGAGTATTGTCTCAACGAGATAAAGACAA
CCCTGAATGGAGAGAAGCGCCAGTGAAAGCTTTCTAGACCAT
BS13233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ttc19-RA | 1110 | CG15173-PA | 1..1110 | 17..1126 | 5550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ttc19-RA | 1440 | CG15173-RA | 244..1355 | 15..1126 | 5560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19044370..19044905 | 550..15 | 2680 | 100 | Minus |
| 2L | 23513712 | 2L | 19043620..19043883 | 1126..863 | 1320 | 100 | Minus |
| 2L | 23513712 | 2L | 19044152..19044319 | 716..549 | 840 | 100 | Minus |
| 2L | 23513712 | 2L | 19043936..19044084 | 862..714 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:29:11 has no hits.
BS13233.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:58 Download gff for
BS13233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15173-RA | 249..1352 | 22..1125 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:01 Download gff for
BS13233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ttc19-RA | 251..1354 | 22..1125 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:43 Download gff for
BS13233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ttc19-RA | 251..1354 | 22..1125 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:43 Download gff for
BS13233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19043621..19043883 | 863..1125 | 100 | <- | Minus |
| 2L | 19043936..19044083 | 715..862 | 100 | <- | Minus |
| 2L | 19044154..19044317 | 551..714 | 100 | <- | Minus |
| 2L | 19044370..19044898 | 22..550 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:01 Download gff for
BS13233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19043621..19043883 | 863..1125 | 100 | <- | Minus |
| arm_2L | 19043936..19044083 | 715..862 | 100 | <- | Minus |
| arm_2L | 19044154..19044317 | 551..714 | 100 | <- | Minus |
| arm_2L | 19044370..19044898 | 22..550 | 100 | | Minus |
BS13233.pep Sequence
Translation from 16 to 1125
> BS13233.pep
MLVRNICKFTQVMGRFRVVVNPRDYCHLAPLKRSRYHQRSEFGCRPLCSN
AAGYEVSWAAPPASGSSGGMFWAFSAAFTLNLFGGADEKEETPEEKLIKT
IKRSILCIQREQYDKAEQMLHLALRMAQDIQSKDGITYVFDLMANLAMER
EQFKKAEKIFTDVMKRLFAEGHTEESPKILHISSKIAHMSQLQGDLEKSF
QGFTWTLQQLAKLLEKMPDDKDILELYGLTKNWFGQLLMKQGKYLEAKNL
FKEAFDTLINVYGAVNDASVTILNNISVAYVNLEKYAEARETLLEAMELT
KELKDATQEGILQANLGLVYLREGLMSQAENACRLAWKLGKQHQNPDAVE
QAEYCLNEIKTTLNGEKRQ*
BS13233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ttc19-PA | 369 | CG15173-PA | 1..369 | 1..369 | 1907 | 100 | Plus |
