Clone BS13234 Report

Search the DGRC for BS13234

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL11-RA
Protein status:BS13234.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13234.3prime Sequence

621 bp (621 high quality bases) assembled on 2006-10-13

> BS13234.3prime
ATGGTCTAGAAAGCTTCTAGCCCGTGCGCAACATCTTTGCTTCCCGCTTC
TCCTGCAACTCGCGCCGTTGCTGTTCCACAATTAACTTGCGCTCCTCCAG
GAACTCGCCATAGGCCGCCGGATCTATTTCCCTGACCACTTTGATGCCAC
AGGTCCGAGCAATGCTGATGAGCATCTCACACATTTGCTGCATGGTAAGA
AGTACATTGGGCGGGTCCTGAATCTTAATAGCTGCAATCTCGTACAAATG
CTTGAGAGTGATCATGCCGGCAACCTCCTTGCCAGGAGTCATGGTGCCCC
TTTGTATGCCCGCCGCTTGCTTCAGGAAAAATGTGGCCGGCGGATGGTGG
ATGGCCAAGTCGTAGCTGCGATCGCTGTTTACGGAAATTCTGCACGGCAG
CGGTACGCCCTCTTTCATTTCCGCGGTCTTGGCATTAAAGTCCTTGCAGA
AAGCGGCGATATTAATCGCTCTCTGTCCCAACATCGGTCCCAATGGCGGA
CCTGCAGCAGCCATTCCCGCAGGTATATTCGTCTTCAGTTTGCTCGTGTG
CGTCACACGTTCCACCGTCTTCTTTAGCGATTTCAGCTTACCCGCTGCCT
TCGACATGTCGACTGATAACT

BS13234.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3351-PA 591 mRpL11-RA 1..591 607..17 2955 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL11-RA 734 CG3351-RA 87..678 607..16 2960 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14512115..14512403 476..188 1445 100 Minus
3R 32079331 3R 14512462..14512635 189..16 870 100 Minus
3R 32079331 3R 14511924..14512058 607..473 675 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:20:05 has no hits.

BS13234.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:45 Download gff for BS13234.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3351-PA 1..591 17..607 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:50:35 Download gff for BS13234.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL11-RA 77..681 10..617 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:42:02 Download gff for BS13234.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL11-RA 77..681 10..617 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:42:02 Download gff for BS13234.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14512464..14512638 10..187 98   Minus
3R 14511914..14512058 473..617 97 -> Minus
3R 14512119..14512403 188..472 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:50:35 Download gff for BS13234.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10337636..10337780 473..617 97 -> Minus
arm_3R 10337841..10338125 188..472 100 -> Minus
arm_3R 10338186..10338360 10..187 98   Minus

BS13234.5prime Sequence

621 bp (619 high quality bases) assembled on 2006-10-13

> BS13234.5prime
GAAGTTATCAGTCGACATGTCGAAGGCAGCGGGTAAGCTGAAATCGCTAA
AGAAGACGGTGGAACGTGTGACGCACACGAGCAAACTGAAGACGAATATA
CCTGCGGGAATGGCTGCTGCAGGTCCGCCATTGGGACCGATGTTGGGACA
GAGAGCGATTAATATCGCCGCTTTCTGCAAGGACTTTAATGCCAAGACCG
CGGAAATGAAAGAGGGCGTACCGCTGCCGTGCAGAATTTCCGTAAACAGC
GATCGCAGCTACGACTTGGCCATCCACCATCCGCCGGCCACATTTTTCCT
GAAGCAAGCGGCGGGCATACAAAGGGGCACCATGACTCCTGGCAAGGAGG
TTGCCGGCATGATCACTCTCAAGCATTTGTACGAGATTGCAGCTATTAAG
ATTCAGGACCCGCCCAATGTACTTCTTACCATGCAGCAAATGTGTGAGAT
GCTCATCAGCATTGCTCGGACCTGTGGCATCAAAGTGGTCAGGGAAATAG
ATCCGGCGGCCTATGGCGAGTTCCTGGAGGAGCGCAAGTTAATTGTGGAA
CAGCAACGGCGCGAGTTGCAGGAGAAGCGGGAAGCAAAGATGTTGCGCAC
GGGCTAAAAGCTTTCTAGACC

BS13234.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3351-PA 591 mRpL11-RA 1..590 17..606 2950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL11-RA 734 CG3351-RA 87..676 17..606 2950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14512115..14512403 148..436 1445 100 Plus
3R 32079331 3R 14512462..14512633 435..606 860 100 Plus
3R 32079331 3R 14511924..14512058 17..151 675 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:54:39 has no hits.

BS13234.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:46 Download gff for BS13234.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3351-PA 1..591 17..607 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:12 Download gff for BS13234.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL11-RA 77..681 7..614 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:32 Download gff for BS13234.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL11-RA 77..681 7..614 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:32 Download gff for BS13234.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14511914..14512058 7..151 97 -> Plus
3R 14512119..14512403 152..436 100 -> Plus
3R 14512464..14512638 437..614 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:12 Download gff for BS13234.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10338186..10338360 437..614 97   Plus
arm_3R 10337636..10337780 7..151 97 -> Plus
arm_3R 10337841..10338125 152..436 100 -> Plus

BS13234.complete Sequence

623 bp assembled on 2006-11-01

GenBank Submission: FJ637397

> BS13234.complete
GAAGTTATCAGTCGACATGTCGAAGGCAGCGGGTAAGCTGAAATCGCTAA
AGAAGACGGTGGAACGTGTGACGCACACGAGCAAACTGAAGACGAATATA
CCTGCGGGAATGGCTGCTGCAGGTCCGCCATTGGGACCGATGTTGGGACA
GAGAGCGATTAATATCGCCGCTTTCTGCAAGGACTTTAATGCCAAGACCG
CGGAAATGAAAGAGGGCGTACCGCTGCCGTGCAGAATTTCCGTAAACAGC
GATCGCAGCTACGACTTGGCCATCCACCATCCGCCGGCCACATTTTTCCT
GAAGCAAGCGGCGGGCATACAAAGGGGCACCATGACTCCTGGCAAGGAGG
TTGCCGGCATGATCACTCTCAAGCATTTGTACGAGATTGCAGCTATTAAG
ATTCAGGACCCGCCCAATGTACTTCTTACCATGCAGCAAATGTGTGAGAT
GCTCATCAGCATTGCTCGGACCTGTGGCATCAAAGTGGTCAGGGAAATAG
ATCCGGCGGCCTATGGCGAGTTCCTGGAGGAGCGCAAGTTAATTGTGGAA
CAGCAACGGCGCGAGTTGCAGGAGAAGCGGGAAGCAAAGATGTTGCGCAC
GGGCTAGAAGCTTTCTAGACCAT

BS13234.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL11-RA 591 CG3351-PA 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL11-RA 734 CG3351-RA 87..678 17..608 2960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14512115..14512403 148..436 1445 100 Plus
3R 32079331 3R 14512462..14512635 435..608 870 100 Plus
3R 32079331 3R 14511924..14512058 17..151 675 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:55:28 has no hits.

BS13234.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:14 Download gff for BS13234.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL11-RA 1..591 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:32 Download gff for BS13234.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL11-RA 47..651 7..614 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:58 Download gff for BS13234.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL11-RA 87..677 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:14 Download gff for BS13234.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL11-RA 47..651 7..614 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:55 Download gff for BS13234.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL11-RA 87..677 17..607 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:55 Download gff for BS13234.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14512119..14512403 152..436 100 -> Plus
3R 14512464..14512634 437..607 100   Plus
3R 14511924..14512058 17..151 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:58 Download gff for BS13234.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10337646..10337780 17..151 100 -> Plus
arm_3R 10337841..10338125 152..436 100 -> Plus
arm_3R 10338186..10338356 437..607 100   Plus

BS13234.pep Sequence

Translation from 16 to 606

> BS13234.pep
MSKAAGKLKSLKKTVERVTHTSKLKTNIPAGMAAAGPPLGPMLGQRAINI
AAFCKDFNAKTAEMKEGVPLPCRISVNSDRSYDLAIHHPPATFFLKQAAG
IQRGTMTPGKEVAGMITLKHLYEIAAIKIQDPPNVLLTMQQMCEMLISIA
RTCGIKVVREIDPAAYGEFLEERKLIVEQQRRELQEKREAKMLRTG*

BS13234.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL11-PA 196 CG3351-PA 1..196 1..196 996 100 Plus