Clone Sequence Records
BS13234.3prime Sequence
621 bp (621 high quality bases) assembled on 2006-10-13
> BS13234.3prime
ATGGTCTAGAAAGCTTCTAGCCCGTGCGCAACATCTTTGCTTCCCGCTTC
TCCTGCAACTCGCGCCGTTGCTGTTCCACAATTAACTTGCGCTCCTCCAG
GAACTCGCCATAGGCCGCCGGATCTATTTCCCTGACCACTTTGATGCCAC
AGGTCCGAGCAATGCTGATGAGCATCTCACACATTTGCTGCATGGTAAGA
AGTACATTGGGCGGGTCCTGAATCTTAATAGCTGCAATCTCGTACAAATG
CTTGAGAGTGATCATGCCGGCAACCTCCTTGCCAGGAGTCATGGTGCCCC
TTTGTATGCCCGCCGCTTGCTTCAGGAAAAATGTGGCCGGCGGATGGTGG
ATGGCCAAGTCGTAGCTGCGATCGCTGTTTACGGAAATTCTGCACGGCAG
CGGTACGCCCTCTTTCATTTCCGCGGTCTTGGCATTAAAGTCCTTGCAGA
AAGCGGCGATATTAATCGCTCTCTGTCCCAACATCGGTCCCAATGGCGGA
CCTGCAGCAGCCATTCCCGCAGGTATATTCGTCTTCAGTTTGCTCGTGTG
CGTCACACGTTCCACCGTCTTCTTTAGCGATTTCAGCTTACCCGCTGCCT
TCGACATGTCGACTGATAACT
BS13234.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3351-PA | 591 | mRpL11-RA | 1..591 | 607..17 | 2955 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL11-RA | 734 | CG3351-RA | 87..678 | 607..16 | 2960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14512115..14512403 | 476..188 | 1445 | 100 | Minus |
3R | 32079331 | 3R | 14512462..14512635 | 189..16 | 870 | 100 | Minus |
3R | 32079331 | 3R | 14511924..14512058 | 607..473 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:20:05 has no hits.
BS13234.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:45 Download gff for
BS13234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3351-PA | 1..591 | 17..607 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:50:35 Download gff for
BS13234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL11-RA | 77..681 | 10..617 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:42:02 Download gff for
BS13234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL11-RA | 77..681 | 10..617 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:42:02 Download gff for
BS13234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14512464..14512638 | 10..187 | 98 | | Minus |
3R | 14511914..14512058 | 473..617 | 97 | -> | Minus |
3R | 14512119..14512403 | 188..472 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:50:35 Download gff for
BS13234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10337636..10337780 | 473..617 | 97 | -> | Minus |
arm_3R | 10337841..10338125 | 188..472 | 100 | -> | Minus |
arm_3R | 10338186..10338360 | 10..187 | 98 | | Minus |
BS13234.5prime Sequence
621 bp (619 high quality bases) assembled on 2006-10-13
> BS13234.5prime
GAAGTTATCAGTCGACATGTCGAAGGCAGCGGGTAAGCTGAAATCGCTAA
AGAAGACGGTGGAACGTGTGACGCACACGAGCAAACTGAAGACGAATATA
CCTGCGGGAATGGCTGCTGCAGGTCCGCCATTGGGACCGATGTTGGGACA
GAGAGCGATTAATATCGCCGCTTTCTGCAAGGACTTTAATGCCAAGACCG
CGGAAATGAAAGAGGGCGTACCGCTGCCGTGCAGAATTTCCGTAAACAGC
GATCGCAGCTACGACTTGGCCATCCACCATCCGCCGGCCACATTTTTCCT
GAAGCAAGCGGCGGGCATACAAAGGGGCACCATGACTCCTGGCAAGGAGG
TTGCCGGCATGATCACTCTCAAGCATTTGTACGAGATTGCAGCTATTAAG
ATTCAGGACCCGCCCAATGTACTTCTTACCATGCAGCAAATGTGTGAGAT
GCTCATCAGCATTGCTCGGACCTGTGGCATCAAAGTGGTCAGGGAAATAG
ATCCGGCGGCCTATGGCGAGTTCCTGGAGGAGCGCAAGTTAATTGTGGAA
CAGCAACGGCGCGAGTTGCAGGAGAAGCGGGAAGCAAAGATGTTGCGCAC
GGGCTAAAAGCTTTCTAGACC
BS13234.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3351-PA | 591 | mRpL11-RA | 1..590 | 17..606 | 2950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:54:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL11-RA | 734 | CG3351-RA | 87..676 | 17..606 | 2950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14512115..14512403 | 148..436 | 1445 | 100 | Plus |
3R | 32079331 | 3R | 14512462..14512633 | 435..606 | 860 | 100 | Plus |
3R | 32079331 | 3R | 14511924..14512058 | 17..151 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:54:39 has no hits.
BS13234.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:46 Download gff for
BS13234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3351-PA | 1..591 | 17..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:12 Download gff for
BS13234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL11-RA | 77..681 | 7..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:32 Download gff for
BS13234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL11-RA | 77..681 | 7..614 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:32 Download gff for
BS13234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14511914..14512058 | 7..151 | 97 | -> | Plus |
3R | 14512119..14512403 | 152..436 | 100 | -> | Plus |
3R | 14512464..14512638 | 437..614 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:12 Download gff for
BS13234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10338186..10338360 | 437..614 | 97 | | Plus |
arm_3R | 10337636..10337780 | 7..151 | 97 | -> | Plus |
arm_3R | 10337841..10338125 | 152..436 | 100 | -> | Plus |
BS13234.complete Sequence
623 bp assembled on 2006-11-01
GenBank Submission: FJ637397
> BS13234.complete
GAAGTTATCAGTCGACATGTCGAAGGCAGCGGGTAAGCTGAAATCGCTAA
AGAAGACGGTGGAACGTGTGACGCACACGAGCAAACTGAAGACGAATATA
CCTGCGGGAATGGCTGCTGCAGGTCCGCCATTGGGACCGATGTTGGGACA
GAGAGCGATTAATATCGCCGCTTTCTGCAAGGACTTTAATGCCAAGACCG
CGGAAATGAAAGAGGGCGTACCGCTGCCGTGCAGAATTTCCGTAAACAGC
GATCGCAGCTACGACTTGGCCATCCACCATCCGCCGGCCACATTTTTCCT
GAAGCAAGCGGCGGGCATACAAAGGGGCACCATGACTCCTGGCAAGGAGG
TTGCCGGCATGATCACTCTCAAGCATTTGTACGAGATTGCAGCTATTAAG
ATTCAGGACCCGCCCAATGTACTTCTTACCATGCAGCAAATGTGTGAGAT
GCTCATCAGCATTGCTCGGACCTGTGGCATCAAAGTGGTCAGGGAAATAG
ATCCGGCGGCCTATGGCGAGTTCCTGGAGGAGCGCAAGTTAATTGTGGAA
CAGCAACGGCGCGAGTTGCAGGAGAAGCGGGAAGCAAAGATGTTGCGCAC
GGGCTAGAAGCTTTCTAGACCAT
BS13234.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:55:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL11-RA | 591 | CG3351-PA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL11-RA | 734 | CG3351-RA | 87..678 | 17..608 | 2960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14512115..14512403 | 148..436 | 1445 | 100 | Plus |
3R | 32079331 | 3R | 14512462..14512635 | 435..608 | 870 | 100 | Plus |
3R | 32079331 | 3R | 14511924..14512058 | 17..151 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:55:28 has no hits.
BS13234.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:14 Download gff for
BS13234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL11-RA | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:32 Download gff for
BS13234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL11-RA | 47..651 | 7..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:58 Download gff for
BS13234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL11-RA | 87..677 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:14 Download gff for
BS13234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL11-RA | 47..651 | 7..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:55 Download gff for
BS13234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL11-RA | 87..677 | 17..607 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:55 Download gff for
BS13234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14512119..14512403 | 152..436 | 100 | -> | Plus |
3R | 14512464..14512634 | 437..607 | 100 | | Plus |
3R | 14511924..14512058 | 17..151 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:58 Download gff for
BS13234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10337646..10337780 | 17..151 | 100 | -> | Plus |
arm_3R | 10337841..10338125 | 152..436 | 100 | -> | Plus |
arm_3R | 10338186..10338356 | 437..607 | 100 | | Plus |
BS13234.pep Sequence
Translation from 16 to 606
> BS13234.pep
MSKAAGKLKSLKKTVERVTHTSKLKTNIPAGMAAAGPPLGPMLGQRAINI
AAFCKDFNAKTAEMKEGVPLPCRISVNSDRSYDLAIHHPPATFFLKQAAG
IQRGTMTPGKEVAGMITLKHLYEIAAIKIQDPPNVLLTMQQMCEMLISIA
RTCGIKVVREIDPAAYGEFLEERKLIVEQQRRELQEKREAKMLRTG*
BS13234.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL11-PA | 196 | CG3351-PA | 1..196 | 1..196 | 996 | 100 | Plus |