Clone Sequence Records
BS13236.3prime Sequence
656 bp (575 high quality bases) assembled on 2006-10-13
> BS13236.3prime
ATGGTCTAGAAAGCTTTTAAGTGGCTCGACTTGGAGAGGAGTTTTTAGAG
TTGCGAGATACAGATGCAATGCTTTGCGGATCTTGCTGAAGCACGAGACG
AGTAAAGGCTAAGCTGAGGAGAAGTGCCTGGCCTAGAAGCTCGCGCTGGT
AGCGCTCTTGTTGTGAGAATTCGAGGCGTAGGTCAGCGGGAAAGTCGATC
TGTTTGTGCAGCTTCAACGGGGGCTCTGTTTCGGGGATCTGATGTTCCAC
GTTGTAATGGGTTCGCATCATGGCCAATATCGTATCCTCGGACGACACGC
GCTCAGTACCCACCATGTGATTAAATAGTCGGGCTGAGAGAAAACGTCGC
ATGTAGTAGACGTTGTTCGTCTTGTTCTCGTCGCCATCTGATCGGGCCAT
CAAGGAGAAGCTCATGATTGCGGAAACCTGGGCCTTCTGGATGTTCACGT
TCTGTTGATCGATGCTCCCTGGGTTGCTGCTGGCCTGGGCCATTTGTGGA
CTCTCCATGACGTAGCAATCGGCCACGGGTATCTGGTGAGATACATAGAG
GCATCGGCGGGAAAGTTCTGACAAATGCCGCTTCCTGTCGTTCAGCTCAT
GGTGCTGCCAGTGCGTGAGCAGACAGGGAGCTTCGTTGCTTCCGATCTTT
AATCCG
BS13236.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14450-PA | 1119 | CG14450-RA | 482..1119 | 654..17 | 3140 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:53:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14450-RB | 1506 | CG14450-RB | 559..1198 | 654..15 | 3170 | 99.7 | Minus |
CG14450-RA | 1502 | CG14450-RA | 555..1194 | 654..15 | 3170 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22726542..22727181 | 15..654 | 3170 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:53:38 has no hits.
BS13236.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:46 Download gff for
BS13236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14450-PA | 479..1119 | 17..656 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:15 Download gff for
BS13236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14450-RA | 552..1203 | 6..656 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:21:52 Download gff for
BS13236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14450-RA | 552..1203 | 6..656 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:21:52 Download gff for
BS13236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22726533..22727182 | 6..656 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:15 Download gff for
BS13236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22719633..22720282 | 6..656 | 98 | | Plus |
BS13236.5prime Sequence
632 bp (555 high quality bases) assembled on 2006-10-13
> BS13236.5prime
GAAGTTATCAGTCGACATGTTGTGCCGGCGATCATTGTTGGGCGTAACGA
CAAAATGCCTAAGACTTTCGTCCACGCAGCAACACAGATCGGGTCAGCCG
GAATGTGACCAAGCCATCGGCCTCTTGCCCGCCTACTCGGATGCAGATCG
TTTGAAGATCTTGAAGACGATTAATGAAAGCAGCATGAATCAGATAGCCA
ACTACGACATAACCAAGGCAAGGGCAACCAAGCTGCAAAACTGGAAGAAC
CGTCACGGACCGCTGCAGGAACTCAGCGACATCCTGTATGTGGAGGGATT
CGGACTGAAGGTGACCACCAAGTTCTTTAAGAGTCTGCTTGCGCCGCCGA
GCAGTGGGAGCGCACAAGTAGGGGAAAATAGACCAAAGACTGCACGAGTC
GCGCCCTTTATAACACCGGCCATGGACGAGGGACAGCGTTCACGTATTGT
ATCTGCTGTAGGGGTGCGCATCGGAGTGACCAGTGTAAGCTGGGCGCGAT
TAAAGATCGGAAGCAACGAAGCTCCCTGTCTGCTCACGCACTGGCAGCAC
CATGAGCTGAACGACAAGAAGCTGCATTTGTCAGAACTTTCCCGCCGAAT
GCCTCTAATGTATCTCAACCCAGATACCCGTG
BS13236.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:45:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14450-PA | 1119 | CG14450-RA | 1..612 | 17..632 | 2945 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:56:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14450-RA | 1502 | CG14450-RA | 74..685 | 17..632 | 2990 | 99.4 | Plus |
CG14450-RB | 1506 | CG14450-RB | 74..689 | 17..632 | 2940 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:56:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22727051..22727481 | 632..198 | 1995 | 98.9 | Minus |
3L | 28110227 | 3L | 22727532..22727716 | 201..17 | 925 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:56:25 has no hits.
BS13236.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:46 Download gff for
BS13236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14450-PA | 1..612 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:47:26 Download gff for
BS13236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14450-RA | 74..685 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:20:25 Download gff for
BS13236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14450-RA | 74..685 | 17..632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:20:25 Download gff for
BS13236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22727051..22727477 | 202..632 | 99 | <- | Minus |
3L | 22727532..22727716 | 17..201 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:47:26 Download gff for
BS13236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22720151..22720577 | 202..632 | 99 | <- | Minus |
arm_3L | 22720632..22720816 | 17..201 | 100 | | Minus |
BS13236.complete Sequence
1151 bp assembled on 2009-12-07
GenBank Submission: KX803135
> BS13236.complete
GAAGTTATCAGTCGACATGTTGTGCCGGCGATCATTGTTGGGCGTAACGA
CAAAATGCCTAAGACTTTCGTCCACGCAGCAACACAGATCGGGTCAGCCG
GAATGTGACCAAGCCATCGGCCTCTTGCCCGCCTACTCGGATGCAGATCG
TTTGAAGATCTTGAAGACGATTAATGAAAGCAGCATGAATCAGATAGCCA
ACTACGACATAACCAAGGCAAGGGCAACCAAGCTGCAAAACTGGAAGAAC
CGTCACGGACCGCTGCAGGAACTCAGCGACATCCTGTATGTGGAGGGATT
CGGACTGAAGGTGACCACCAAGTTCTTTAAGAGTCTGCTTGCGCCGCCGA
GCAGTGGGAGCGCACAAGTAGGGGAAAATAGACCAAAGACTGCACGAGTC
GCGCCCTTTATAACACCGGCCATGGACGAGGGACAGCGTTCACGTATTGT
ATCTGCTGTAGGGGTGCGCATCGGAGTGACCAGTGTAAGCTGGGCGCGAT
TAAAGATCGGAAGCAACGAAGCTCCCTGTCTGCTCACGCACTGGCAGCAC
CATGAGCTGAACGACAAGAAGCTGCATTTGTCAGAACTTTCCCGCCGATG
CCTCTATGTATCTCACCAGATACCCGTGGCCGATTGCTACGTCATGGAGA
GTCCACAAATGGCCCAGGCCAGCAGCAACCCAGGGAGCATCGATCAACAG
AACGTGAACATCCAGAAGGCCCAGGTTTCCGCAATCATGAGCTTCTCCTT
GATGGCCCGATCAGATGGCGACGAGAACAAGACGAACAACGTCTACTACA
TGCGACGTTTTCTCTCAGCCCGACTATTTAATCACATGGTGGGTACTGAG
CGCGTGTCGTCCGAGGATACGATATTGGCCATGATGCGAACCCATTACAA
CGTGGAACATCAGATCCCCGAAACAGAGCCCCCGTTGAAGCTGCACAAAC
AGATCGACTTTCCCGCTGACCTACGCCTCGAATTCTCACAACAAGAGCGC
TACCAGCGCGAGCTTCTAGGCCAGGCACTTCTCCTCAGCTTAGCCTTTAC
TCGTCTCGTGCTTCAGCAAGATCCGCAAAGCATTGCATCTGTATCTCGCA
ACTCTAAAAACTCCTCTCCAAGTCGAGCCACTTAAAAGCTTTCTAGACCA
T
BS13236.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14450-RA | 1119 | CG14450-PA | 1..1119 | 17..1135 | 5595 | 100 | Plus |
CG14450-RB | 189 | CG14450-PB | 1..185 | 17..201 | 925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14450-RA | 1502 | CG14450-RA | 74..1194 | 17..1137 | 5605 | 100 | Plus |
CG14450-RB | 1506 | CG14450-RB | 74..1198 | 17..1137 | 5530 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22726542..22727481 | 1137..198 | 4685 | 99.9 | Minus |
3L | 28110227 | 3L | 22727532..22727716 | 201..17 | 925 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:48:47 has no hits.
BS13236.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:39 Download gff for
BS13236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14450-RA | 69..1180 | 22..1133 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:32 Download gff for
BS13236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14450-RA | 79..1190 | 22..1133 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:55 Download gff for
BS13236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14450-RA | 69..1180 | 22..1133 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:25 Download gff for
BS13236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14450-RA | 79..1190 | 22..1133 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:25 Download gff for
BS13236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22726546..22727477 | 202..1133 | 100 | <- | Minus |
3L | 22727532..22727711 | 22..201 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:32 Download gff for
BS13236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22719646..22720577 | 202..1133 | 100 | <- | Minus |
arm_3L | 22720632..22720811 | 22..201 | 100 | | Minus |
BS13236.pep Sequence
Translation from 16 to 1134
> BS13236.pep
MLCRRSLLGVTTKCLRLSSTQQHRSGQPECDQAIGLLPAYSDADRLKILK
TINESSMNQIANYDITKARATKLQNWKNRHGPLQELSDILYVEGFGLKVT
TKFFKSLLAPPSSGSAQVGENRPKTARVAPFITPAMDEGQRSRIVSAVGV
RIGVTSVSWARLKIGSNEAPCLLTHWQHHELNDKKLHLSELSRRCLYVSH
QIPVADCYVMESPQMAQASSNPGSIDQQNVNIQKAQVSAIMSFSLMARSD
GDENKTNNVYYMRRFLSARLFNHMVGTERVSSEDTILAMMRTHYNVEHQI
PETEPPLKLHKQIDFPADLRLEFSQQERYQRELLGQALLLSLAFTRLVLQ
QDPQSIASVSRNSKNSSPSRAT*
BS13236.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14450-PA | 372 | CG14450-PA | 1..372 | 1..372 | 1902 | 100 | Plus |
CG14450-PB | 62 | CG14450-PB | 1..61 | 1..61 | 309 | 100 | Plus |