Clone BS13236 Report

Search the DGRC for BS13236

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG14450-RA
Protein status:BS13236.pep: full length peptide match
Sequenced Size:1151

Clone Sequence Records

BS13236.3prime Sequence

656 bp (575 high quality bases) assembled on 2006-10-13

> BS13236.3prime
ATGGTCTAGAAAGCTTTTAAGTGGCTCGACTTGGAGAGGAGTTTTTAGAG
TTGCGAGATACAGATGCAATGCTTTGCGGATCTTGCTGAAGCACGAGACG
AGTAAAGGCTAAGCTGAGGAGAAGTGCCTGGCCTAGAAGCTCGCGCTGGT
AGCGCTCTTGTTGTGAGAATTCGAGGCGTAGGTCAGCGGGAAAGTCGATC
TGTTTGTGCAGCTTCAACGGGGGCTCTGTTTCGGGGATCTGATGTTCCAC
GTTGTAATGGGTTCGCATCATGGCCAATATCGTATCCTCGGACGACACGC
GCTCAGTACCCACCATGTGATTAAATAGTCGGGCTGAGAGAAAACGTCGC
ATGTAGTAGACGTTGTTCGTCTTGTTCTCGTCGCCATCTGATCGGGCCAT
CAAGGAGAAGCTCATGATTGCGGAAACCTGGGCCTTCTGGATGTTCACGT
TCTGTTGATCGATGCTCCCTGGGTTGCTGCTGGCCTGGGCCATTTGTGGA
CTCTCCATGACGTAGCAATCGGCCACGGGTATCTGGTGAGATACATAGAG
GCATCGGCGGGAAAGTTCTGACAAATGCCGCTTCCTGTCGTTCAGCTCAT
GGTGCTGCCAGTGCGTGAGCAGACAGGGAGCTTCGTTGCTTCCGATCTTT
AATCCG

BS13236.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14450-PA 1119 CG14450-RA 482..1119 654..17 3140 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14450-RB 1506 CG14450-RB 559..1198 654..15 3170 99.7 Minus
CG14450-RA 1502 CG14450-RA 555..1194 654..15 3170 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22726542..22727181 15..654 3170 99.7 Plus
Blast to na_te.dros performed on 2015-02-12 04:53:38 has no hits.

BS13236.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:46 Download gff for BS13236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14450-PA 479..1119 17..656 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:15 Download gff for BS13236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14450-RA 552..1203 6..656 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:21:52 Download gff for BS13236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14450-RA 552..1203 6..656 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:21:52 Download gff for BS13236.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22726533..22727182 6..656 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:15 Download gff for BS13236.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22719633..22720282 6..656 98   Plus

BS13236.5prime Sequence

632 bp (555 high quality bases) assembled on 2006-10-13

> BS13236.5prime
GAAGTTATCAGTCGACATGTTGTGCCGGCGATCATTGTTGGGCGTAACGA
CAAAATGCCTAAGACTTTCGTCCACGCAGCAACACAGATCGGGTCAGCCG
GAATGTGACCAAGCCATCGGCCTCTTGCCCGCCTACTCGGATGCAGATCG
TTTGAAGATCTTGAAGACGATTAATGAAAGCAGCATGAATCAGATAGCCA
ACTACGACATAACCAAGGCAAGGGCAACCAAGCTGCAAAACTGGAAGAAC
CGTCACGGACCGCTGCAGGAACTCAGCGACATCCTGTATGTGGAGGGATT
CGGACTGAAGGTGACCACCAAGTTCTTTAAGAGTCTGCTTGCGCCGCCGA
GCAGTGGGAGCGCACAAGTAGGGGAAAATAGACCAAAGACTGCACGAGTC
GCGCCCTTTATAACACCGGCCATGGACGAGGGACAGCGTTCACGTATTGT
ATCTGCTGTAGGGGTGCGCATCGGAGTGACCAGTGTAAGCTGGGCGCGAT
TAAAGATCGGAAGCAACGAAGCTCCCTGTCTGCTCACGCACTGGCAGCAC
CATGAGCTGAACGACAAGAAGCTGCATTTGTCAGAACTTTCCCGCCGAAT
GCCTCTAATGTATCTCAACCCAGATACCCGTG

BS13236.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG14450-PA 1119 CG14450-RA 1..612 17..632 2945 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14450-RA 1502 CG14450-RA 74..685 17..632 2990 99.4 Plus
CG14450-RB 1506 CG14450-RB 74..689 17..632 2940 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22727051..22727481 632..198 1995 98.9 Minus
3L 28110227 3L 22727532..22727716 201..17 925 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:56:25 has no hits.

BS13236.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:46 Download gff for BS13236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14450-PA 1..612 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:47:26 Download gff for BS13236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14450-RA 74..685 17..632 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:20:25 Download gff for BS13236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14450-RA 74..685 17..632 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:20:25 Download gff for BS13236.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22727051..22727477 202..632 99 <- Minus
3L 22727532..22727716 17..201 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:47:26 Download gff for BS13236.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22720151..22720577 202..632 99 <- Minus
arm_3L 22720632..22720816 17..201 100   Minus

BS13236.complete Sequence

1151 bp assembled on 2009-12-07

GenBank Submission: KX803135

> BS13236.complete
GAAGTTATCAGTCGACATGTTGTGCCGGCGATCATTGTTGGGCGTAACGA
CAAAATGCCTAAGACTTTCGTCCACGCAGCAACACAGATCGGGTCAGCCG
GAATGTGACCAAGCCATCGGCCTCTTGCCCGCCTACTCGGATGCAGATCG
TTTGAAGATCTTGAAGACGATTAATGAAAGCAGCATGAATCAGATAGCCA
ACTACGACATAACCAAGGCAAGGGCAACCAAGCTGCAAAACTGGAAGAAC
CGTCACGGACCGCTGCAGGAACTCAGCGACATCCTGTATGTGGAGGGATT
CGGACTGAAGGTGACCACCAAGTTCTTTAAGAGTCTGCTTGCGCCGCCGA
GCAGTGGGAGCGCACAAGTAGGGGAAAATAGACCAAAGACTGCACGAGTC
GCGCCCTTTATAACACCGGCCATGGACGAGGGACAGCGTTCACGTATTGT
ATCTGCTGTAGGGGTGCGCATCGGAGTGACCAGTGTAAGCTGGGCGCGAT
TAAAGATCGGAAGCAACGAAGCTCCCTGTCTGCTCACGCACTGGCAGCAC
CATGAGCTGAACGACAAGAAGCTGCATTTGTCAGAACTTTCCCGCCGATG
CCTCTATGTATCTCACCAGATACCCGTGGCCGATTGCTACGTCATGGAGA
GTCCACAAATGGCCCAGGCCAGCAGCAACCCAGGGAGCATCGATCAACAG
AACGTGAACATCCAGAAGGCCCAGGTTTCCGCAATCATGAGCTTCTCCTT
GATGGCCCGATCAGATGGCGACGAGAACAAGACGAACAACGTCTACTACA
TGCGACGTTTTCTCTCAGCCCGACTATTTAATCACATGGTGGGTACTGAG
CGCGTGTCGTCCGAGGATACGATATTGGCCATGATGCGAACCCATTACAA
CGTGGAACATCAGATCCCCGAAACAGAGCCCCCGTTGAAGCTGCACAAAC
AGATCGACTTTCCCGCTGACCTACGCCTCGAATTCTCACAACAAGAGCGC
TACCAGCGCGAGCTTCTAGGCCAGGCACTTCTCCTCAGCTTAGCCTTTAC
TCGTCTCGTGCTTCAGCAAGATCCGCAAAGCATTGCATCTGTATCTCGCA
ACTCTAAAAACTCCTCTCCAAGTCGAGCCACTTAAAAGCTTTCTAGACCA
T

BS13236.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14450-RA 1119 CG14450-PA 1..1119 17..1135 5595 100 Plus
CG14450-RB 189 CG14450-PB 1..185 17..201 925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14450-RA 1502 CG14450-RA 74..1194 17..1137 5605 100 Plus
CG14450-RB 1506 CG14450-RB 74..1198 17..1137 5530 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22726542..22727481 1137..198 4685 99.9 Minus
3L 28110227 3L 22727532..22727716 201..17 925 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:48:47 has no hits.

BS13236.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:39 Download gff for BS13236.complete
Subject Subject Range Query Range Percent Splice Strand
CG14450-RA 69..1180 22..1133 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:32 Download gff for BS13236.complete
Subject Subject Range Query Range Percent Splice Strand
CG14450-RA 79..1190 22..1133 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:55 Download gff for BS13236.complete
Subject Subject Range Query Range Percent Splice Strand
CG14450-RA 69..1180 22..1133 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:25 Download gff for BS13236.complete
Subject Subject Range Query Range Percent Splice Strand
CG14450-RA 79..1190 22..1133 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:25 Download gff for BS13236.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22726546..22727477 202..1133 100 <- Minus
3L 22727532..22727711 22..201 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:32 Download gff for BS13236.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22719646..22720577 202..1133 100 <- Minus
arm_3L 22720632..22720811 22..201 100   Minus

BS13236.pep Sequence

Translation from 16 to 1134

> BS13236.pep
MLCRRSLLGVTTKCLRLSSTQQHRSGQPECDQAIGLLPAYSDADRLKILK
TINESSMNQIANYDITKARATKLQNWKNRHGPLQELSDILYVEGFGLKVT
TKFFKSLLAPPSSGSAQVGENRPKTARVAPFITPAMDEGQRSRIVSAVGV
RIGVTSVSWARLKIGSNEAPCLLTHWQHHELNDKKLHLSELSRRCLYVSH
QIPVADCYVMESPQMAQASSNPGSIDQQNVNIQKAQVSAIMSFSLMARSD
GDENKTNNVYYMRRFLSARLFNHMVGTERVSSEDTILAMMRTHYNVEHQI
PETEPPLKLHKQIDFPADLRLEFSQQERYQRELLGQALLLSLAFTRLVLQ
QDPQSIASVSRNSKNSSPSRAT*

BS13236.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14450-PA 372 CG14450-PA 1..372 1..372 1902 100 Plus
CG14450-PB 62 CG14450-PB 1..61 1..61 309 100 Plus