Clone Sequence Records
BS13237.complete Sequence
761 bp assembled on 2010-02-09
GenBank Submission: KX802986
> BS13237.complete
GAAGTTATCAGTCGACATGCAGATGAAAAGTGGAATATTAATAGCATTAT
GTCTATGCCTTTCGTTGAACGAAGGCCTGGCCCTTCTGGAGCACGAAGGC
GAGACCATCAACAGATGCATCCAAAACTATGGCGGACTTACTGCGGAAAA
TGCCGAACGTCTAGAACGATTCAAGGAATGGTCGGATAGCTACGAGGAAA
TCCCCTGCTTCACGCGCTGCTATTTGTCCGAGATGTTCGACTTTTACAAT
AACTTAACGGGCTTCAATAAGGACGGAATTGTGGGCGTCTTTGGAAGACC
CGTCTACGAAGCCTGCCGAAAGAAATTGGAACTGCCATTCGAATCAGGCG
AGAGCAGCTGCAAACATGCCTACGAGGGCTTCCACTGCATCACCAACATG
GAAAGCCACCCGTTCACGGTTATTGACAACATGCCAAACATATCCCCGTC
GGCCAAGGATGCAATGAAGGACTGCCTTCAGGATGTCCACCAGGACGAGT
GGAAGAGCTTCGATGCCTTCGCCTACTATCCTGTCAATGAACCGATTCCG
TGCTTCACCCGGTGCTTCGTGGACAAGCTGCATATCTTCGAGGAGAAAAC
GCGTCTTTGGAAACTGGAGGCGATGAAGCAAAACCTGGGCATTCCGGCCA
AAGGAGCTCGCATAAGGACCTGCCATCGGCACCGCGGCAGGGACCGATGT
GCCACATATTACAAACAGTTCACCTGCTACGCGATGGCTGTTTAGAAGCT
TTCTAGACCAT
BS13237.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp83cd-RA | 729 | CG15582-PA | 1..729 | 17..745 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:31:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp83cd-RA | 899 | CG15582-RA | 54..782 | 17..745 | 3645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6109269..6109616 | 398..745 | 1740 | 100 | Plus |
3R | 32079331 | 3R | 6108300..6108630 | 67..397 | 1655 | 100 | Plus |
3R | 32079331 | 3R | 6108187..6108237 | 17..67 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:31:39 has no hits.
BS13237.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:01 Download gff for
BS13237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp83cd-RA | 54..782 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:10 Download gff for
BS13237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp83cd-RA | 54..782 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:54:59 Download gff for
BS13237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp83cd-RA | 54..782 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:57 Download gff for
BS13237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp83cd-RA | 54..782 | 17..745 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:57 Download gff for
BS13237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6108187..6108237 | 17..67 | 100 | -> | Plus |
3R | 6108301..6108630 | 68..397 | 100 | -> | Plus |
3R | 6109269..6109616 | 398..745 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:10 Download gff for
BS13237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1933909..1933959 | 17..67 | 100 | -> | Plus |
arm_3R | 1934023..1934352 | 68..397 | 100 | -> | Plus |
arm_3R | 1934991..1935338 | 398..745 | 100 | | Plus |
BS13237.5prime Sequence
592 bp (533 high quality bases) assembled on 2006-10-13
> BS13237.5prime
GAAGTTATCAGTCGACATGCAGATGAAAAGTGGAATATTAATAGCATTAT
GTCTATGCCTTTCGTTGAACGAAGGCCTGGCCCTTCTGGAGCACGAAGGC
GAGACCATCAACAGATGCATCCAAAACTATGGCGGACTTACTGCGGAAAA
TGCCGAACGTCTAGAACGATTCAAGGAATGGTCGGATAGCTACGAGGAAA
TCCCCTGCTTCACGCGCTGCTATTTGTCCGAGATGTTCGACTTTTACAAT
AACTTAACGGGCTTCAATAAGGACGGAATTGTGGGCGTCTTTGGAAGACC
CGTCTACGAAGCCTGCCGAAAGAAATTGGAACTGCCATTCGAATCAGGCG
AGAGCAGCTGCAAACATGCCTACGAGGGCTTCCACTGCATCACCAACATG
GAAAGCCACCCGTTCACGGTTATTGACAACATGCCAAACATATCCCCGTC
GGCCAAGGATGCAATGAAGGACTGCCTTCAGGATGTCCACCAGGACGAGT
GGAAGAGCTTCGATGCCTTCGCCTACTATCCTGTCAATGAACCGATTCCG
TGCTTCACCCGGTGCTTCGTGGACAAGCTGCATATCTTCGAG
BS13237.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15582-PA | 729 | Obp83cd-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp83cd-RA | 899 | CG15582-RA | 54..629 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6108300..6108630 | 67..397 | 1655 | 100 | Plus |
3R | 32079331 | 3R | 6109269..6109463 | 398..592 | 975 | 100 | Plus |
3R | 32079331 | 3R | 6108187..6108237 | 17..67 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:51:31 has no hits.
BS13237.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:48 Download gff for
BS13237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15582-PA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:37:16 Download gff for
BS13237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp83cd-RA | 46..629 | 4..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:09:41 Download gff for
BS13237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp83cd-RA | 46..629 | 4..592 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:09:41 Download gff for
BS13237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6108179..6108237 | 4..67 | 92 | -> | Plus |
3R | 6108301..6108630 | 68..397 | 100 | -> | Plus |
3R | 6109269..6109463 | 398..592 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:37:16 Download gff for
BS13237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1933901..1933959 | 4..67 | 92 | -> | Plus |
arm_3R | 1934023..1934352 | 68..397 | 100 | -> | Plus |
arm_3R | 1934991..1935185 | 398..592 | 100 | | Plus |
BS13237.pep Sequence
Translation from 16 to 744
> BS13237.pep
MQMKSGILIALCLCLSLNEGLALLEHEGETINRCIQNYGGLTAENAERLE
RFKEWSDSYEEIPCFTRCYLSEMFDFYNNLTGFNKDGIVGVFGRPVYEAC
RKKLELPFESGESSCKHAYEGFHCITNMESHPFTVIDNMPNISPSAKDAM
KDCLQDVHQDEWKSFDAFAYYPVNEPIPCFTRCFVDKLHIFEEKTRLWKL
EAMKQNLGIPAKGARIRTCHRHRGRDRCATYYKQFTCYAMAV*
BS13237.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp83cd-PA | 242 | CG15582-PA | 1..242 | 1..242 | 1334 | 100 | Plus |
Obp83ef-PA | 245 | CG31557-PA | 1..230 | 3..238 | 200 | 24.2 | Plus |