Clone BS13237 Report

Search the DGRC for BS13237

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptObp83cd-RA
Protein status:BS13237.pep: full length peptide match
Sequenced Size:761

Clone Sequence Records

BS13237.complete Sequence

761 bp assembled on 2010-02-09

GenBank Submission: KX802986

> BS13237.complete
GAAGTTATCAGTCGACATGCAGATGAAAAGTGGAATATTAATAGCATTAT
GTCTATGCCTTTCGTTGAACGAAGGCCTGGCCCTTCTGGAGCACGAAGGC
GAGACCATCAACAGATGCATCCAAAACTATGGCGGACTTACTGCGGAAAA
TGCCGAACGTCTAGAACGATTCAAGGAATGGTCGGATAGCTACGAGGAAA
TCCCCTGCTTCACGCGCTGCTATTTGTCCGAGATGTTCGACTTTTACAAT
AACTTAACGGGCTTCAATAAGGACGGAATTGTGGGCGTCTTTGGAAGACC
CGTCTACGAAGCCTGCCGAAAGAAATTGGAACTGCCATTCGAATCAGGCG
AGAGCAGCTGCAAACATGCCTACGAGGGCTTCCACTGCATCACCAACATG
GAAAGCCACCCGTTCACGGTTATTGACAACATGCCAAACATATCCCCGTC
GGCCAAGGATGCAATGAAGGACTGCCTTCAGGATGTCCACCAGGACGAGT
GGAAGAGCTTCGATGCCTTCGCCTACTATCCTGTCAATGAACCGATTCCG
TGCTTCACCCGGTGCTTCGTGGACAAGCTGCATATCTTCGAGGAGAAAAC
GCGTCTTTGGAAACTGGAGGCGATGAAGCAAAACCTGGGCATTCCGGCCA
AAGGAGCTCGCATAAGGACCTGCCATCGGCACCGCGGCAGGGACCGATGT
GCCACATATTACAAACAGTTCACCTGCTACGCGATGGCTGTTTAGAAGCT
TTCTAGACCAT

BS13237.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83cd-RA 729 CG15582-PA 1..729 17..745 3645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83cd-RA 899 CG15582-RA 54..782 17..745 3645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6109269..6109616 398..745 1740 100 Plus
3R 32079331 3R 6108300..6108630 67..397 1655 100 Plus
3R 32079331 3R 6108187..6108237 17..67 255 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:31:39 has no hits.

BS13237.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:01 Download gff for BS13237.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83cd-RA 54..782 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:10 Download gff for BS13237.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83cd-RA 54..782 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:54:59 Download gff for BS13237.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83cd-RA 54..782 17..745 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:57 Download gff for BS13237.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83cd-RA 54..782 17..745 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:57 Download gff for BS13237.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6108187..6108237 17..67 100 -> Plus
3R 6108301..6108630 68..397 100 -> Plus
3R 6109269..6109616 398..745 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:10 Download gff for BS13237.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1933909..1933959 17..67 100 -> Plus
arm_3R 1934023..1934352 68..397 100 -> Plus
arm_3R 1934991..1935338 398..745 100   Plus

BS13237.5prime Sequence

592 bp (533 high quality bases) assembled on 2006-10-13

> BS13237.5prime
GAAGTTATCAGTCGACATGCAGATGAAAAGTGGAATATTAATAGCATTAT
GTCTATGCCTTTCGTTGAACGAAGGCCTGGCCCTTCTGGAGCACGAAGGC
GAGACCATCAACAGATGCATCCAAAACTATGGCGGACTTACTGCGGAAAA
TGCCGAACGTCTAGAACGATTCAAGGAATGGTCGGATAGCTACGAGGAAA
TCCCCTGCTTCACGCGCTGCTATTTGTCCGAGATGTTCGACTTTTACAAT
AACTTAACGGGCTTCAATAAGGACGGAATTGTGGGCGTCTTTGGAAGACC
CGTCTACGAAGCCTGCCGAAAGAAATTGGAACTGCCATTCGAATCAGGCG
AGAGCAGCTGCAAACATGCCTACGAGGGCTTCCACTGCATCACCAACATG
GAAAGCCACCCGTTCACGGTTATTGACAACATGCCAAACATATCCCCGTC
GGCCAAGGATGCAATGAAGGACTGCCTTCAGGATGTCCACCAGGACGAGT
GGAAGAGCTTCGATGCCTTCGCCTACTATCCTGTCAATGAACCGATTCCG
TGCTTCACCCGGTGCTTCGTGGACAAGCTGCATATCTTCGAG

BS13237.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG15582-PA 729 Obp83cd-RA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83cd-RA 899 CG15582-RA 54..629 17..592 2880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6108300..6108630 67..397 1655 100 Plus
3R 32079331 3R 6109269..6109463 398..592 975 100 Plus
3R 32079331 3R 6108187..6108237 17..67 255 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:51:31 has no hits.

BS13237.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:48 Download gff for BS13237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15582-PA 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:37:16 Download gff for BS13237.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp83cd-RA 46..629 4..592 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:09:41 Download gff for BS13237.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp83cd-RA 46..629 4..592 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:09:41 Download gff for BS13237.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6108179..6108237 4..67 92 -> Plus
3R 6108301..6108630 68..397 100 -> Plus
3R 6109269..6109463 398..592 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:37:16 Download gff for BS13237.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1933901..1933959 4..67 92 -> Plus
arm_3R 1934023..1934352 68..397 100 -> Plus
arm_3R 1934991..1935185 398..592 100   Plus

BS13237.pep Sequence

Translation from 16 to 744

> BS13237.pep
MQMKSGILIALCLCLSLNEGLALLEHEGETINRCIQNYGGLTAENAERLE
RFKEWSDSYEEIPCFTRCYLSEMFDFYNNLTGFNKDGIVGVFGRPVYEAC
RKKLELPFESGESSCKHAYEGFHCITNMESHPFTVIDNMPNISPSAKDAM
KDCLQDVHQDEWKSFDAFAYYPVNEPIPCFTRCFVDKLHIFEEKTRLWKL
EAMKQNLGIPAKGARIRTCHRHRGRDRCATYYKQFTCYAMAV*

BS13237.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83cd-PA 242 CG15582-PA 1..242 1..242 1334 100 Plus
Obp83ef-PA 245 CG31557-PA 1..230 3..238 200 24.2 Plus