Clone Sequence Records
BS13239.complete Sequence
1331 bp assembled on 2010-06-25
GenBank Submission: KX800299
> BS13239.complete
GAAGTTATCAGTCGACATGAAATTCTTTGTCATTGCCTTTGCTGTGATCG
CAGCTGCCTCGGCGGCCTCCATTGCCACGGATTACCTGCCGCCAGTGGAC
AACAACCTGGAATCTGCCTCCGAACTCGTGGAGGTGCCCGCCGAGCAGGG
AGTTCTCTCCGACGATGGATACCGCTACAAGACCGTGCGCCGCCTGAAGT
TGCGCCACCGTCGTGATGTGAACGAGCTCCCCTCCGGTGAATACCTGCCC
CCTGTTGAGGAATCCGCCTCCGAAGCCGTTGCCGTCGAGACTCCTCTGGC
TGATGATGGCTACCGTTACAAGACCGTCCGCCGTGTGATCCGTCGTCGTC
GTGATGTCTCCGAACTCTCCCCTGAGTACCTGCCCCCTGTTGAGGAGTCC
GCCTCCGAGGCTGTTGCTGTCGAGACTCCCCTGGCTGATGATGGCTACCG
CTACAAGACTGTCCGCCGTGTGATCCGTCGTCGTCGTGATGTCTCCGAAC
TCTCCCCTGAGTACCTGCCCCCTGTTGAGGAGTCCGCCTCCGAGGCTGTT
GCCGTCGAGACTCCCCTGGCTGATGATGGCTACCGCTACAAGACTGTCCG
CCGTGTGATCCGTCGTCGTCGTGATGTTTCCGAGCTGTCCCCTGAATACC
TGCCCCCTGTTGAGGAGTCCGCCTCTGAGGCTGTTGCTGTGGACACCCCT
CTTGCTGATGATGGTTACCGTTACAAGACCGTCCGCCGTGTGATCCGTCG
TCGTCGTGATGTCAATGAGCTTCCTTCCGGCGAGTACCTGCCCCCCGTTG
AGGAGTCTGCCTCCGAGGCTGTTGCTGTTGAGACCCCTCTGGCTGCTGAT
GGATACCGCTACAAGACTGTCCGTCGTGTGATCCGTCGCCGTCGTGATGT
AAACGAGCTGTCCGCCGAATACCTGCCCCCTGTTGAGGAATCCGCCTCCG
AAGCCGTTGCCGTCGAGACTCCTCTGGCTGATGATGGATACCGCTACAAG
ACCGTGCGTCGTGTGATCCGTCGTCGTCGTGATGTCTCCGAGCTGTCCCC
TGAATACCTGCCCCCTGTTGAGGAGTCCGCCTCCGAGGCTGTTGCTGTGG
AGACTCCCCTGGCTGATGATGGATACCGCTACAAGACCGTGCGTCGTGTG
ATCCGTCGCCGCCGTGATGTCTCTGAGCTGCCTTCCGGCGAGTACCTGCC
CCCCGTGGAGGAGACCGCCTCTGCCATCATTGATGTGCCCGCCGAGCAGA
CCGTCCTGGCCAGCGATGGCTACCGCTACAAGACCGTCCGTCGTCTGAAG
CTCCGTCGCCACTAAAAGCTTTCTAGACCAT
BS13239.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:46:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13705-RA | 1299 | CG13705-PA | 1..1299 | 17..1315 | 6495 | 100 | Plus |
CG13705-RA | 1299 | CG13705-PA | 222..1067 | 373..1221 | 2790 | 89.3 | Plus |
CG13705-RA | 1299 | CG13705-PA | 357..1205 | 238..1083 | 2790 | 89.3 | Plus |
CG13705-RA | 1299 | CG13705-PA | 222..932 | 508..1221 | 2100 | 87.2 | Plus |
CG13705-RA | 1299 | CG13705-PA | 492..1205 | 238..948 | 2100 | 87.2 | Plus |
CG13705-RA | 1299 | CG13705-PA | 222..797 | 643..1221 | 1900 | 88.9 | Plus |
CG13705-RA | 1299 | CG13705-PA | 627..1205 | 238..813 | 1900 | 88.9 | Plus |
CG13705-RA | 1299 | CG13705-PA | 148..661 | 710..1223 | 1435 | 86.1 | Plus |
CG13705-RA | 1299 | CG13705-PA | 694..1207 | 164..677 | 1435 | 86.1 | Plus |
CG13705-RA | 1299 | CG13705-PA | 148..524 | 848..1221 | 1135 | 88.4 | Plus |
CG13705-RA | 1299 | CG13705-PA | 832..1205 | 164..540 | 1135 | 88.4 | Plus |
CG13705-RA | 1299 | CG13705-PA | 148..389 | 983..1221 | 475 | 82.4 | Plus |
CG13705-RA | 1299 | CG13705-PA | 967..1205 | 164..405 | 475 | 82.4 | Plus |
CG30457-RA | 570 | CG30457-PA | 520..564 | 305..349 | 210 | 97.8 | Plus |
CG30457-RA | 570 | CG30457-PA | 520..564 | 710..754 | 195 | 95.6 | Plus |
CG32237-RA | 2736 | CG32237-PA | 169..224 | 164..219 | 190 | 89.3 | Plus |
CG30457-RA | 570 | CG30457-PA | 520..564 | 440..484 | 180 | 93.3 | Plus |
CG30457-RA | 570 | CG30457-PA | 520..564 | 575..619 | 180 | 93.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:46:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13705-RA | 1536 | CG13705-RA | 53..1351 | 17..1315 | 6495 | 100 | Plus |
CG13705-RA | 1536 | CG13705-RA | 274..1119 | 373..1221 | 2790 | 89.3 | Plus |
CG13705-RA | 1536 | CG13705-RA | 409..1257 | 238..1083 | 2790 | 89.3 | Plus |
CG13705-RA | 1536 | CG13705-RA | 274..984 | 508..1221 | 2100 | 87.2 | Plus |
CG13705-RA | 1536 | CG13705-RA | 544..1257 | 238..948 | 2100 | 87.2 | Plus |
CG13705-RA | 1536 | CG13705-RA | 274..849 | 643..1221 | 1900 | 88.9 | Plus |
CG13705-RA | 1536 | CG13705-RA | 679..1257 | 238..813 | 1900 | 88.9 | Plus |
CG13705-RA | 1536 | CG13705-RA | 200..713 | 710..1223 | 1435 | 86.1 | Plus |
CG13705-RA | 1536 | CG13705-RA | 746..1259 | 164..677 | 1435 | 86.1 | Plus |
CG13705-RA | 1536 | CG13705-RA | 200..576 | 848..1221 | 1135 | 88.4 | Plus |
CG13705-RA | 1536 | CG13705-RA | 884..1257 | 164..540 | 1135 | 88.4 | Plus |
CG13705-RA | 1536 | CG13705-RA | 200..441 | 983..1221 | 475 | 82.4 | Plus |
CG13705-RA | 1536 | CG13705-RA | 1019..1257 | 164..405 | 475 | 82.4 | Plus |
CG30457-RA | 646 | CG30457-RA | 564..608 | 305..349 | 210 | 97.8 | Plus |
CG30457-RA | 646 | CG30457-RA | 564..608 | 710..754 | 195 | 95.6 | Plus |
CG32237-RA | 2948 | CG32237-RA | 229..284 | 164..219 | 190 | 89.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:46:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4896989..4898285 | 19..1315 | 6485 | 100 | Plus |
3L | 28110227 | 3L | 4897208..4898053 | 373..1221 | 2790 | 89.3 | Plus |
3L | 28110227 | 3L | 4897343..4898191 | 238..1083 | 2790 | 89.3 | Plus |
3L | 28110227 | 3L | 4897208..4897918 | 508..1221 | 2100 | 87.2 | Plus |
3L | 28110227 | 3L | 4897478..4898191 | 238..948 | 2100 | 87.2 | Plus |
3L | 28110227 | 3L | 4897208..4897783 | 643..1221 | 1900 | 88.9 | Plus |
3L | 28110227 | 3L | 4897613..4898191 | 238..813 | 1900 | 88.9 | Plus |
3L | 28110227 | 3L | 4897134..4897647 | 710..1223 | 1435 | 86.1 | Plus |
3L | 28110227 | 3L | 4897680..4898193 | 164..677 | 1435 | 86.1 | Plus |
3L | 28110227 | 3L | 4897134..4897510 | 848..1221 | 1135 | 88.4 | Plus |
3L | 28110227 | 3L | 4897818..4898191 | 164..540 | 1135 | 88.4 | Plus |
3L | 28110227 | 3L | 4897134..4897375 | 983..1221 | 475 | 82.4 | Plus |
3L | 28110227 | 3L | 4897953..4898191 | 164..405 | 475 | 82.4 | Plus |
2R | 25286936 | 2R | 17160160..17160204 | 349..305 | 210 | 97.8 | Minus |
2R | 25286936 | 2R | 17160160..17160204 | 754..710 | 195 | 95.6 | Minus |
3L | 28110227 | 3L | 4849598..4849653 | 215..160 | 190 | 89.3 | Minus |
3L | 28110227 | 3L | 4852102..4852157 | 219..164 | 190 | 89.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:46:45 has no hits.
BS13239.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:52:35 Download gff for
BS13239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13705-RA | 59..1355 | 17..1313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:21 Download gff for
BS13239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13705-RA | 53..1349 | 17..1313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:24:53 Download gff for
BS13239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13705-RA | 53..1349 | 17..1313 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:24:53 Download gff for
BS13239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4896988..4898283 | 17..1313 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:21 Download gff for
BS13239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4896988..4898283 | 17..1313 | 99 | | Plus |
BS13239.5prime Sequence
703 bp (502 high quality bases) assembled on 2010-02-21
> BS13239.5prime
GCTGCCTCGGCGGCCTCCATTGCCACGGATTACCTGCCGCCAGTGGACAA
CAACCTGGAATCTGCCTCCGAACTCGTGGAGGTGCCCGCCGAGCAGGGAG
TTCTCTCCGACGATGGATACCGCTACAAGACCGTGCGCCGCCTGAAGTTG
CGCCACCGTCGTGATGTGAACGAGCTCCCCTCCGGTGAATACCTGCCCCC
TGTTGAGGAATCCGCCTCCGAAGCCGTTGCCGTCGAGACTCCTCTGGCTG
ATGATGGCTACCGTTACAAGACCGTCCGCCGTGTGATCCGTCGTCGTCGT
GATGTCTCCGAACTCTCCCCTGAGTACCTGCCCCCTGTTGAGGAGTCCGC
CTCCGAGGCTGTTGCTGTCGAGACTCCCCTGGCTGATGATGGCTACCGCT
ACAAGACTGTCCGCCGTGTGATCCGTCTTTCTTCGTGATGTCTCCGAACT
CTCCCCTGAGTACCTGCCCCCTGTTGAGGAGTCCGCCTCCGAGGCTTGTT
GCCGTTGAGACTCCCCTGGTTGATGATGGCTACCGCTTCTAGACTGTCCG
CCGTGTGATCCGTCGTCTTCTTGATGTTTCCGAGCTGTCCCCTGATACCT
GGCCCCCTGTTGAGGAATTCGCCTCTGAGGCTGTTTGCTGGGGACACCCT
TCTTTGCTTGATTGATGGTTTTCCGTTACAGAACCGTCCGCCGTGGGATT
CGT
BS13239.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 02:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13705-RA | 1536 | CG13705-RA | 89..784 | 1..703 | 3040 | 96.3 | Plus |
CG13705-RA | 1536 | CG13705-RA | 341..876 | 112..653 | 1515 | 86.5 | Plus |
CG13705-RA | 1536 | CG13705-RA | 476..994 | 112..635 | 1365 | 85 | Plus |
CG13705-RA | 1536 | CG13705-RA | 611..1137 | 112..644 | 1340 | 84.5 | Plus |
CG13705-RA | 1536 | CG13705-RA | 746..1216 | 112..587 | 1285 | 85.1 | Plus |
CG13705-RA | 1536 | CG13705-RA | 200..586 | 253..635 | 1175 | 87.9 | Plus |
CG13705-RA | 1536 | CG13705-RA | 884..1257 | 112..489 | 1165 | 87.9 | Plus |
CG13705-RA | 1536 | CG13705-RA | 1019..1257 | 112..353 | 560 | 83.3 | Plus |
CG13705-RA | 1536 | CG13705-RA | 200..451 | 388..635 | 545 | 82.7 | Plus |
CG30457-RA | 646 | CG30457-RA | 564..608 | 253..297 | 210 | 97.8 | Plus |
CG13705-RA | 1536 | CG13705-RA | 1154..1257 | 112..218 | 195 | 79.4 | Plus |
CG32237-RA | 2948 | CG32237-RA | 229..284 | 112..167 | 190 | 89.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 02:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4897023..4897673 | 1..654 | 2865 | 96.9 | Plus |
3L | 28110227 | 3L | 4897343..4897732 | 186..577 | 1410 | 91.8 | Plus |
3L | 28110227 | 3L | 4897478..4897928 | 186..635 | 1215 | 86.1 | Plus |
3L | 28110227 | 3L | 4897680..4898150 | 112..587 | 1210 | 85.1 | Plus |
3L | 28110227 | 3L | 4897613..4898063 | 186..635 | 1185 | 85.7 | Plus |
3L | 28110227 | 3L | 4897818..4898127 | 112..427 | 1060 | 90.5 | Plus |
3L | 28110227 | 3L | 4897208..4897520 | 321..635 | 1055 | 90.5 | Plus |
3L | 28110227 | 3L | 4897208..4897385 | 457..635 | 485 | 86 | Plus |
3L | 28110227 | 3L | 4897953..4898191 | 112..353 | 475 | 82.4 | Plus |
2R | 25286936 | 2R | 17160160..17160204 | 297..253 | 210 | 97.8 | Minus |
3L | 28110227 | 3L | 4849598..4849653 | 163..108 | 190 | 89.3 | Minus |
3L | 28110227 | 3L | 4852102..4852157 | 167..112 | 190 | 89.3 | Minus |
Blast to na_te.dros performed on 2015-01-30 02:40:21 has no hits.
BS13239.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:43:11 Download gff for
BS13239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13705-RA | 95..790 | 1..703 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:02:46 Download gff for
BS13239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13705-RA | 89..784 | 1..703 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:04:03 Download gff for
BS13239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13705-RA | 89..784 | 1..703 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:04:03 Download gff for
BS13239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4897023..4897718 | 1..703 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:02:46 Download gff for
BS13239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4897023..4897718 | 1..703 | 96 | | Plus |
BS13239.pep Sequence
Translation from 16 to 1314
> BS13239.pep
MKFFVIAFAVIAAASAASIATDYLPPVDNNLESASELVEVPAEQGVLSDD
GYRYKTVRRLKLRHRRDVNELPSGEYLPPVEESASEAVAVETPLADDGYR
YKTVRRVIRRRRDVSELSPEYLPPVEESASEAVAVETPLADDGYRYKTVR
RVIRRRRDVSELSPEYLPPVEESASEAVAVETPLADDGYRYKTVRRVIRR
RRDVSELSPEYLPPVEESASEAVAVDTPLADDGYRYKTVRRVIRRRRDVN
ELPSGEYLPPVEESASEAVAVETPLAADGYRYKTVRRVIRRRRDVNELSA
EYLPPVEESASEAVAVETPLADDGYRYKTVRRVIRRRRDVSELSPEYLPP
VEESASEAVAVETPLADDGYRYKTVRRVIRRRRDVSELPSGEYLPPVEET
ASAIIDVPAEQTVLASDGYRYKTVRRLKLRRH*
BS13239.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13705-PA | 432 | CG13705-PA | 1..432 | 1..432 | 2161 | 100 | Plus |
CG32237-PA | 911 | CG32237-PA | 412..906 | 17..430 | 1023 | 50.5 | Plus |
CG32237-PA | 911 | CG32237-PA | 356..855 | 17..431 | 1015 | 50 | Plus |
CG32237-PA | 911 | CG32237-PA | 1..519 | 1..431 | 1012 | 48.1 | Plus |
CG32237-PA | 911 | CG32237-PA | 468..908 | 17..383 | 894 | 49.8 | Plus |
CG7465-PA | 321 | CG7465-PA | 1..320 | 1..292 | 502 | 43.2 | Plus |
CG7465-PA | 321 | CG7465-PA | 17..321 | 158..432 | 491 | 44.8 | Plus |
CG11131-PB | 229 | CG11131-PB | 1..228 | 1..202 | 387 | 45.5 | Plus |
CG11131-PA | 229 | CG11131-PA | 1..228 | 1..202 | 387 | 45.5 | Plus |
CG11131-PB | 229 | CG11131-PB | 29..229 | 253..432 | 370 | 48.3 | Plus |
CG11131-PB | 229 | CG11131-PB | 28..228 | 161..338 | 355 | 46.9 | Plus |
CG11131-PB | 229 | CG11131-PB | 28..164 | 297..432 | 309 | 50 | Plus |