Clone BS13239 Report

Search the DGRC for BS13239

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG13705-RA
Protein status:BS13239.pep: full length peptide match
Sequenced Size:1331

Clone Sequence Records

BS13239.complete Sequence

1331 bp assembled on 2010-06-25

GenBank Submission: KX800299

> BS13239.complete
GAAGTTATCAGTCGACATGAAATTCTTTGTCATTGCCTTTGCTGTGATCG
CAGCTGCCTCGGCGGCCTCCATTGCCACGGATTACCTGCCGCCAGTGGAC
AACAACCTGGAATCTGCCTCCGAACTCGTGGAGGTGCCCGCCGAGCAGGG
AGTTCTCTCCGACGATGGATACCGCTACAAGACCGTGCGCCGCCTGAAGT
TGCGCCACCGTCGTGATGTGAACGAGCTCCCCTCCGGTGAATACCTGCCC
CCTGTTGAGGAATCCGCCTCCGAAGCCGTTGCCGTCGAGACTCCTCTGGC
TGATGATGGCTACCGTTACAAGACCGTCCGCCGTGTGATCCGTCGTCGTC
GTGATGTCTCCGAACTCTCCCCTGAGTACCTGCCCCCTGTTGAGGAGTCC
GCCTCCGAGGCTGTTGCTGTCGAGACTCCCCTGGCTGATGATGGCTACCG
CTACAAGACTGTCCGCCGTGTGATCCGTCGTCGTCGTGATGTCTCCGAAC
TCTCCCCTGAGTACCTGCCCCCTGTTGAGGAGTCCGCCTCCGAGGCTGTT
GCCGTCGAGACTCCCCTGGCTGATGATGGCTACCGCTACAAGACTGTCCG
CCGTGTGATCCGTCGTCGTCGTGATGTTTCCGAGCTGTCCCCTGAATACC
TGCCCCCTGTTGAGGAGTCCGCCTCTGAGGCTGTTGCTGTGGACACCCCT
CTTGCTGATGATGGTTACCGTTACAAGACCGTCCGCCGTGTGATCCGTCG
TCGTCGTGATGTCAATGAGCTTCCTTCCGGCGAGTACCTGCCCCCCGTTG
AGGAGTCTGCCTCCGAGGCTGTTGCTGTTGAGACCCCTCTGGCTGCTGAT
GGATACCGCTACAAGACTGTCCGTCGTGTGATCCGTCGCCGTCGTGATGT
AAACGAGCTGTCCGCCGAATACCTGCCCCCTGTTGAGGAATCCGCCTCCG
AAGCCGTTGCCGTCGAGACTCCTCTGGCTGATGATGGATACCGCTACAAG
ACCGTGCGTCGTGTGATCCGTCGTCGTCGTGATGTCTCCGAGCTGTCCCC
TGAATACCTGCCCCCTGTTGAGGAGTCCGCCTCCGAGGCTGTTGCTGTGG
AGACTCCCCTGGCTGATGATGGATACCGCTACAAGACCGTGCGTCGTGTG
ATCCGTCGCCGCCGTGATGTCTCTGAGCTGCCTTCCGGCGAGTACCTGCC
CCCCGTGGAGGAGACCGCCTCTGCCATCATTGATGTGCCCGCCGAGCAGA
CCGTCCTGGCCAGCGATGGCTACCGCTACAAGACCGTCCGTCGTCTGAAG
CTCCGTCGCCACTAAAAGCTTTCTAGACCAT

BS13239.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13705-RA 1299 CG13705-PA 1..1299 17..1315 6495 100 Plus
CG13705-RA 1299 CG13705-PA 222..1067 373..1221 2790 89.3 Plus
CG13705-RA 1299 CG13705-PA 357..1205 238..1083 2790 89.3 Plus
CG13705-RA 1299 CG13705-PA 222..932 508..1221 2100 87.2 Plus
CG13705-RA 1299 CG13705-PA 492..1205 238..948 2100 87.2 Plus
CG13705-RA 1299 CG13705-PA 222..797 643..1221 1900 88.9 Plus
CG13705-RA 1299 CG13705-PA 627..1205 238..813 1900 88.9 Plus
CG13705-RA 1299 CG13705-PA 148..661 710..1223 1435 86.1 Plus
CG13705-RA 1299 CG13705-PA 694..1207 164..677 1435 86.1 Plus
CG13705-RA 1299 CG13705-PA 148..524 848..1221 1135 88.4 Plus
CG13705-RA 1299 CG13705-PA 832..1205 164..540 1135 88.4 Plus
CG13705-RA 1299 CG13705-PA 148..389 983..1221 475 82.4 Plus
CG13705-RA 1299 CG13705-PA 967..1205 164..405 475 82.4 Plus
CG30457-RA 570 CG30457-PA 520..564 305..349 210 97.8 Plus
CG30457-RA 570 CG30457-PA 520..564 710..754 195 95.6 Plus
CG32237-RA 2736 CG32237-PA 169..224 164..219 190 89.3 Plus
CG30457-RA 570 CG30457-PA 520..564 440..484 180 93.3 Plus
CG30457-RA 570 CG30457-PA 520..564 575..619 180 93.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13705-RA 1536 CG13705-RA 53..1351 17..1315 6495 100 Plus
CG13705-RA 1536 CG13705-RA 274..1119 373..1221 2790 89.3 Plus
CG13705-RA 1536 CG13705-RA 409..1257 238..1083 2790 89.3 Plus
CG13705-RA 1536 CG13705-RA 274..984 508..1221 2100 87.2 Plus
CG13705-RA 1536 CG13705-RA 544..1257 238..948 2100 87.2 Plus
CG13705-RA 1536 CG13705-RA 274..849 643..1221 1900 88.9 Plus
CG13705-RA 1536 CG13705-RA 679..1257 238..813 1900 88.9 Plus
CG13705-RA 1536 CG13705-RA 200..713 710..1223 1435 86.1 Plus
CG13705-RA 1536 CG13705-RA 746..1259 164..677 1435 86.1 Plus
CG13705-RA 1536 CG13705-RA 200..576 848..1221 1135 88.4 Plus
CG13705-RA 1536 CG13705-RA 884..1257 164..540 1135 88.4 Plus
CG13705-RA 1536 CG13705-RA 200..441 983..1221 475 82.4 Plus
CG13705-RA 1536 CG13705-RA 1019..1257 164..405 475 82.4 Plus
CG30457-RA 646 CG30457-RA 564..608 305..349 210 97.8 Plus
CG30457-RA 646 CG30457-RA 564..608 710..754 195 95.6 Plus
CG32237-RA 2948 CG32237-RA 229..284 164..219 190 89.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4896989..4898285 19..1315 6485 100 Plus
3L 28110227 3L 4897208..4898053 373..1221 2790 89.3 Plus
3L 28110227 3L 4897343..4898191 238..1083 2790 89.3 Plus
3L 28110227 3L 4897208..4897918 508..1221 2100 87.2 Plus
3L 28110227 3L 4897478..4898191 238..948 2100 87.2 Plus
3L 28110227 3L 4897208..4897783 643..1221 1900 88.9 Plus
3L 28110227 3L 4897613..4898191 238..813 1900 88.9 Plus
3L 28110227 3L 4897134..4897647 710..1223 1435 86.1 Plus
3L 28110227 3L 4897680..4898193 164..677 1435 86.1 Plus
3L 28110227 3L 4897134..4897510 848..1221 1135 88.4 Plus
3L 28110227 3L 4897818..4898191 164..540 1135 88.4 Plus
3L 28110227 3L 4897134..4897375 983..1221 475 82.4 Plus
3L 28110227 3L 4897953..4898191 164..405 475 82.4 Plus
2R 25286936 2R 17160160..17160204 349..305 210 97.8 Minus
2R 25286936 2R 17160160..17160204 754..710 195 95.6 Minus
3L 28110227 3L 4849598..4849653 215..160 190 89.3 Minus
3L 28110227 3L 4852102..4852157 219..164 190 89.3 Minus
Blast to na_te.dros performed on 2014-11-28 08:46:45 has no hits.

BS13239.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:52:35 Download gff for BS13239.complete
Subject Subject Range Query Range Percent Splice Strand
CG13705-RA 59..1355 17..1313 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:21 Download gff for BS13239.complete
Subject Subject Range Query Range Percent Splice Strand
CG13705-RA 53..1349 17..1313 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:24:53 Download gff for BS13239.complete
Subject Subject Range Query Range Percent Splice Strand
CG13705-RA 53..1349 17..1313 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:24:53 Download gff for BS13239.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4896988..4898283 17..1313 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:21 Download gff for BS13239.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4896988..4898283 17..1313 99   Plus

BS13239.5prime Sequence

703 bp (502 high quality bases) assembled on 2010-02-21

> BS13239.5prime
GCTGCCTCGGCGGCCTCCATTGCCACGGATTACCTGCCGCCAGTGGACAA
CAACCTGGAATCTGCCTCCGAACTCGTGGAGGTGCCCGCCGAGCAGGGAG
TTCTCTCCGACGATGGATACCGCTACAAGACCGTGCGCCGCCTGAAGTTG
CGCCACCGTCGTGATGTGAACGAGCTCCCCTCCGGTGAATACCTGCCCCC
TGTTGAGGAATCCGCCTCCGAAGCCGTTGCCGTCGAGACTCCTCTGGCTG
ATGATGGCTACCGTTACAAGACCGTCCGCCGTGTGATCCGTCGTCGTCGT
GATGTCTCCGAACTCTCCCCTGAGTACCTGCCCCCTGTTGAGGAGTCCGC
CTCCGAGGCTGTTGCTGTCGAGACTCCCCTGGCTGATGATGGCTACCGCT
ACAAGACTGTCCGCCGTGTGATCCGTCTTTCTTCGTGATGTCTCCGAACT
CTCCCCTGAGTACCTGCCCCCTGTTGAGGAGTCCGCCTCCGAGGCTTGTT
GCCGTTGAGACTCCCCTGGTTGATGATGGCTACCGCTTCTAGACTGTCCG
CCGTGTGATCCGTCGTCTTCTTGATGTTTCCGAGCTGTCCCCTGATACCT
GGCCCCCTGTTGAGGAATTCGCCTCTGAGGCTGTTTGCTGGGGACACCCT
TCTTTGCTTGATTGATGGTTTTCCGTTACAGAACCGTCCGCCGTGGGATT
CGT

BS13239.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 02:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13705-RA 1536 CG13705-RA 89..784 1..703 3040 96.3 Plus
CG13705-RA 1536 CG13705-RA 341..876 112..653 1515 86.5 Plus
CG13705-RA 1536 CG13705-RA 476..994 112..635 1365 85 Plus
CG13705-RA 1536 CG13705-RA 611..1137 112..644 1340 84.5 Plus
CG13705-RA 1536 CG13705-RA 746..1216 112..587 1285 85.1 Plus
CG13705-RA 1536 CG13705-RA 200..586 253..635 1175 87.9 Plus
CG13705-RA 1536 CG13705-RA 884..1257 112..489 1165 87.9 Plus
CG13705-RA 1536 CG13705-RA 1019..1257 112..353 560 83.3 Plus
CG13705-RA 1536 CG13705-RA 200..451 388..635 545 82.7 Plus
CG30457-RA 646 CG30457-RA 564..608 253..297 210 97.8 Plus
CG13705-RA 1536 CG13705-RA 1154..1257 112..218 195 79.4 Plus
CG32237-RA 2948 CG32237-RA 229..284 112..167 190 89.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 02:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4897023..4897673 1..654 2865 96.9 Plus
3L 28110227 3L 4897343..4897732 186..577 1410 91.8 Plus
3L 28110227 3L 4897478..4897928 186..635 1215 86.1 Plus
3L 28110227 3L 4897680..4898150 112..587 1210 85.1 Plus
3L 28110227 3L 4897613..4898063 186..635 1185 85.7 Plus
3L 28110227 3L 4897818..4898127 112..427 1060 90.5 Plus
3L 28110227 3L 4897208..4897520 321..635 1055 90.5 Plus
3L 28110227 3L 4897208..4897385 457..635 485 86 Plus
3L 28110227 3L 4897953..4898191 112..353 475 82.4 Plus
2R 25286936 2R 17160160..17160204 297..253 210 97.8 Minus
3L 28110227 3L 4849598..4849653 163..108 190 89.3 Minus
3L 28110227 3L 4852102..4852157 167..112 190 89.3 Minus
Blast to na_te.dros performed on 2015-01-30 02:40:21 has no hits.

BS13239.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:43:11 Download gff for BS13239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13705-RA 95..790 1..703 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:02:46 Download gff for BS13239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13705-RA 89..784 1..703 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:04:03 Download gff for BS13239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13705-RA 89..784 1..703 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:04:03 Download gff for BS13239.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4897023..4897718 1..703 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:02:46 Download gff for BS13239.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4897023..4897718 1..703 96   Plus

BS13239.pep Sequence

Translation from 16 to 1314

> BS13239.pep
MKFFVIAFAVIAAASAASIATDYLPPVDNNLESASELVEVPAEQGVLSDD
GYRYKTVRRLKLRHRRDVNELPSGEYLPPVEESASEAVAVETPLADDGYR
YKTVRRVIRRRRDVSELSPEYLPPVEESASEAVAVETPLADDGYRYKTVR
RVIRRRRDVSELSPEYLPPVEESASEAVAVETPLADDGYRYKTVRRVIRR
RRDVSELSPEYLPPVEESASEAVAVDTPLADDGYRYKTVRRVIRRRRDVN
ELPSGEYLPPVEESASEAVAVETPLAADGYRYKTVRRVIRRRRDVNELSA
EYLPPVEESASEAVAVETPLADDGYRYKTVRRVIRRRRDVSELSPEYLPP
VEESASEAVAVETPLADDGYRYKTVRRVIRRRRDVSELPSGEYLPPVEET
ASAIIDVPAEQTVLASDGYRYKTVRRLKLRRH*

BS13239.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13705-PA 432 CG13705-PA 1..432 1..432 2161 100 Plus
CG32237-PA 911 CG32237-PA 412..906 17..430 1023 50.5 Plus
CG32237-PA 911 CG32237-PA 356..855 17..431 1015 50 Plus
CG32237-PA 911 CG32237-PA 1..519 1..431 1012 48.1 Plus
CG32237-PA 911 CG32237-PA 468..908 17..383 894 49.8 Plus
CG7465-PA 321 CG7465-PA 1..320 1..292 502 43.2 Plus
CG7465-PA 321 CG7465-PA 17..321 158..432 491 44.8 Plus
CG11131-PB 229 CG11131-PB 1..228 1..202 387 45.5 Plus
CG11131-PA 229 CG11131-PA 1..228 1..202 387 45.5 Plus
CG11131-PB 229 CG11131-PB 29..229 253..432 370 48.3 Plus
CG11131-PB 229 CG11131-PB 28..228 161..338 355 46.9 Plus
CG11131-PB 229 CG11131-PB 28..164 297..432 309 50 Plus