Clone BS13240 Report

Search the DGRC for BS13240

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG14615-RA
Protein status:BS13240.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13240.3prime Sequence

760 bp (645 high quality bases) assembled on 2006-10-13

> BS13240.3prime
ATGGTCTAGAAAGCTTCTATGAAGAATTCGGTACCAGCTTAATCCACTCA
TTGACCAGATCTTTCTGGTACCCGATCCGCTTGAGCAGCGCCTCCGACCG
CCAGTTAGTAGCGACAATCCAGGCCGTTAGGGTGATCTCCTCGCCCCGAG
CAATTTCTCGGCTCATCGCAGCGGCTAGGAGGCCACCTAGTCCTCTACGC
TCCGCCTTGGGCAGCACTTGCAGCATGCCCAGTCCGGAAAAGTCGTTCTG
AAAGATCCAGGCAATCAGTTCCCCAGTGTCGCTTCGGCAGATGCCCAAGG
ATTTGTTGAAACGGACGAGCGCCTGGAGATAAGTGAGTGAGCCTTCACCC
TTGTTAGGCCAGGAATCGTGCACCATGGCTGCATCCTCAGCCCTCAATCG
CCGAATCTCGAACTCAGAGGGCAGATCTGGAACTTTTGCACAAAAGGCAT
CCTCGTGCGACAAAACCATCCCGAAACACTGGCGTGGTTGAATGGCGGTG
ACCCCGCGGCTGACGGCCAACTCTTTGACTCGATTACAAAATCCCAGATC
AACGTTGGTCAGCAGGGCTCCCTGTGTCCACTCGATGAGCTGCGTTTGCT
CCAGGCATTCCCACAGCTCCGCGGCTCCATCTGGCTGCCAGCTGAAGAAG
GAGACGCTCTGCACGATGTCCCGATGAAGGCTCACATAGGTGCCCCACGT
CCGGAAGTTTCCCCTTCGATGGGTGTAGAACTGCTTTCTCAGAGAAATGT
GGTTCAAATC

BS13240.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14615-PA 915 CG14615-RA 176..915 756..17 3700 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG14615-RB 1826 CG14615-RB 340..1088 760..12 3715 99.7 Minus
CG14615-RA 1356 CG14615-RA 428..1176 760..12 3715 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22448532..22449064 228..760 2650 99.8 Plus
X 23542271 X 22447921..22448137 12..228 1070 99.5 Plus
Blast to na_te.dros performed on 2015-01-30 18:09:50 has no hits.

BS13240.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:49 Download gff for BS13240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14615-PA 172..915 17..760 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:46 Download gff for BS13240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14615-RA 428..1176 12..760 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:58 Download gff for BS13240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14615-RA 428..1176 12..760 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:58 Download gff for BS13240.3prime
Subject Subject Range Query Range Percent Splice Strand
X 22447921..22448136 12..227 99 <- Plus
X 22448532..22449064 228..760 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:46 Download gff for BS13240.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21849757..21849972 12..227 99 <- Plus
arm_X 21850368..21850900 228..760 99   Plus

BS13240.5prime Sequence

741 bp (740 high quality bases) assembled on 2006-10-13

> BS13240.5prime
GAAGTTATCAGTCGACATGAGTTCAGATAAGAACGGTGATATCTTGCGGC
CACTTAGCGATAGCGAAGTGGACGAACTGCTTGATCTATACAAAGTTAAA
TTCGGTATAAGGAACTTCCACTACCTATTACTGTACAACCAGCGAAAATG
GGACCGCCAGCTGAGCGAGGCTCAAATACCGCGCAATGATCTGAACCACA
TTTCTCTGAGAAAGCAGTTCTACACCCATCGAAGGGGAAACTTCCGGACG
TGGGGCACCTATGTGAGCCTTCATCGGGACATCGTGCAGAGCGTCTCCTT
CTTCAGCTGGCAGCCAGATGGAGCCGCGGAGCTGTGGGAATGCCTGGAGC
AAACGCAGCTCATCGAGTGGACACAGGGAGCCCTGCTGACCAACGTTGAT
CTGGGATTTTGTAATCGAGTCAAAGAGTTGGCCGTCAGCCGCGGGGTCAC
CGCCATTCAACCACGCCAGTGTTTCGGGATGGTTTTGTCGCACGAGGATG
CCTTTTGTGCAAAAGTTCCAGATCTGCCCTCTGAGTTCGAGATTCGGCGA
TTGAGGGCTGAGGATGCAGCCATGGTGCACGATTCCTGGCCTAACAAGGG
TGAAGGCTCACTCACTTATCTCCAGGCGCTCGTCCGTTTCAACAAATCCT
TGGGCATCTGCCGAAGCGACACTGGGGAACTGATTGCCTGGATCTTTCAA
AACGACTTTTCCGGACTGGGCATGCTGCAAGTGCTGCCCAA

BS13240.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14615-PA 915 CG14615-RA 1..725 17..741 3600 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14615-RB 1826 CG14615-RB 169..893 17..741 3610 99.9 Plus
CG14615-RA 1356 CG14615-RA 257..981 17..741 3610 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22448532..22449235 720..17 3505 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 17:21:46 has no hits.

BS13240.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:49 Download gff for BS13240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14615-PA 1..723 17..739 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:17:49 Download gff for BS13240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14615-RA 257..979 17..739 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:44 Download gff for BS13240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14615-RA 257..979 17..739 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:44 Download gff for BS13240.5prime
Subject Subject Range Query Range Percent Splice Strand
X 22448118..22448136 721..739 100 <- Minus
X 22448532..22449235 17..720 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:17:49 Download gff for BS13240.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21849954..21849972 721..739 100 <- Minus
arm_X 21850368..21851071 17..720 99   Minus

BS13240.complete Sequence

947 bp assembled on 2006-11-01

GenBank Submission: FJ637398

> BS13240.complete
GAAGTTATCAGTCGACATGAGTTCAGATAAGAACGGTGATATCTTGCGGC
CACTTAGCGATAGCGAAGTGGACGAACTGCTTGATCTATACAAAGTTAAA
TTCGGTATAAGGAACTTCCACTACCTATTACTGTACAACCAGCGAAAATG
GGACCGCCAGCTGAGCGAGGCTCAAATACCGCGCAATGATCTGAACCACA
TTTCTCTGAGAAAGCAGTTCTACACCCATCGAAGGGGAAACTTCCGGACG
TGGGGCACCTATGTGAGCCTTCATCGGGACATCGTGCAGAGCGTCTCCTT
CTTCAGCTGGCAGCCAGATGGAGCCGCGGAGCTGTGGGAATGCCTGGAGC
AAACGCAGCTCATCGAGTGGACACAGGGAGCCCTGCTGACCAACGTTGAT
CTGGGATTTTGTAATCGAGTCAAAGAGTTGGCCGTCAGCCGCGGGGTCAC
CGCCATTCAACCACGCCAGTGTTTCGGGATGGTTTTGTCGCACGAGGATG
CCTTTTGTGCAAAAGTTCCAGATCTGCCCTCTGAGTTCGAGATTCGGCGA
TTGAGGGCTGAGGATGCAGCCATGGTGCACGATTCCTGGCCTAACAAGGG
TGAAGGCTCACTCACTTATCTCCAGGCGCTCGTCCGTTTCAACAAATCCT
TGGGCATCTGCCGAAGCGACACTGGGGAACTGATTGCCTGGATCTTTCAG
AACGACTTTTCCGGACTGGGCATGCTGCAAGTGCTGCCCAAGGCGGAGCG
TAGAGGACTAGGTGGCCTCCTAGCCGCTGCGATGAGCCGAGAAATTGCTC
GGGGCGAGGAGATCACCCTAACGGCCTGGATTGTCGCTACTAACTGGCGG
TCGGAGGCGCTGCTCAAGCGGATCGGGTACCAGAAAGATCTGGTCAATGA
GTGGATTAAGCTGGTACCGAATTCTTCATAGAAGCTTTCTAGACCAT

BS13240.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14615-RB 915 CG14615-PB 1..915 17..931 4575 100 Plus
CG14615-RA 915 CG14615-PA 1..915 17..931 4575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14615-RB 1826 CG14615-RB 169..1088 17..936 4585 99.9 Plus
CG14615-RA 1356 CG14615-RA 257..1176 17..936 4585 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22448532..22449235 720..17 3520 100 Minus
X 23542271 X 22447921..22448137 936..720 1070 99.5 Minus
Blast to na_te.dros performed on 2014-11-27 14:21:28 has no hits.

BS13240.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:38 Download gff for BS13240.complete
Subject Subject Range Query Range Percent Splice Strand
CG14615-RA 1..915 17..931 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:08 Download gff for BS13240.complete
Subject Subject Range Query Range Percent Splice Strand
CG14615-RA 257..1176 17..936 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:50 Download gff for BS13240.complete
Subject Subject Range Query Range Percent Splice Strand
CG14615-RA 257..1171 17..931 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:38 Download gff for BS13240.complete
Subject Subject Range Query Range Percent Splice Strand
CG14615-RA 257..1176 17..936 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:31 Download gff for BS13240.complete
Subject Subject Range Query Range Percent Splice Strand
CG14615-RA 257..1171 17..931 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:31 Download gff for BS13240.complete
Subject Subject Range Query Range Percent Splice Strand
X 22447926..22448136 721..931 100 <- Minus
X 22448532..22449235 17..720 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:50 Download gff for BS13240.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21849762..21849972 721..931 100 <- Minus
arm_X 21850368..21851071 17..720 100   Minus

BS13240.pep Sequence

Translation from 16 to 930

> BS13240.pep
MSSDKNGDILRPLSDSEVDELLDLYKVKFGIRNFHYLLLYNQRKWDRQLS
EAQIPRNDLNHISLRKQFYTHRRGNFRTWGTYVSLHRDIVQSVSFFSWQP
DGAAELWECLEQTQLIEWTQGALLTNVDLGFCNRVKELAVSRGVTAIQPR
QCFGMVLSHEDAFCAKVPDLPSEFEIRRLRAEDAAMVHDSWPNKGEGSLT
YLQALVRFNKSLGICRSDTGELIAWIFQNDFSGLGMLQVLPKAERRGLGG
LLAAAMSREIARGEEITLTAWIVATNWRSEALLKRIGYQKDLVNEWIKLV
PNSS*

BS13240.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14615-PB 304 CG14615-PB 1..304 1..304 1600 100 Plus
CG14615-PA 304 CG14615-PA 1..304 1..304 1600 100 Plus
CG17681-PA 293 CG17681-PA 5..267 7..289 216 25.1 Plus
CG12560-PB 278 CG12560-PB 152..269 170..289 194 32.2 Plus
CG5783-PA 287 CG5783-PA 92..276 115..301 193 27.5 Plus