Clone Sequence Records
BS13240.3prime Sequence
760 bp (645 high quality bases) assembled on 2006-10-13
> BS13240.3prime
ATGGTCTAGAAAGCTTCTATGAAGAATTCGGTACCAGCTTAATCCACTCA
TTGACCAGATCTTTCTGGTACCCGATCCGCTTGAGCAGCGCCTCCGACCG
CCAGTTAGTAGCGACAATCCAGGCCGTTAGGGTGATCTCCTCGCCCCGAG
CAATTTCTCGGCTCATCGCAGCGGCTAGGAGGCCACCTAGTCCTCTACGC
TCCGCCTTGGGCAGCACTTGCAGCATGCCCAGTCCGGAAAAGTCGTTCTG
AAAGATCCAGGCAATCAGTTCCCCAGTGTCGCTTCGGCAGATGCCCAAGG
ATTTGTTGAAACGGACGAGCGCCTGGAGATAAGTGAGTGAGCCTTCACCC
TTGTTAGGCCAGGAATCGTGCACCATGGCTGCATCCTCAGCCCTCAATCG
CCGAATCTCGAACTCAGAGGGCAGATCTGGAACTTTTGCACAAAAGGCAT
CCTCGTGCGACAAAACCATCCCGAAACACTGGCGTGGTTGAATGGCGGTG
ACCCCGCGGCTGACGGCCAACTCTTTGACTCGATTACAAAATCCCAGATC
AACGTTGGTCAGCAGGGCTCCCTGTGTCCACTCGATGAGCTGCGTTTGCT
CCAGGCATTCCCACAGCTCCGCGGCTCCATCTGGCTGCCAGCTGAAGAAG
GAGACGCTCTGCACGATGTCCCGATGAAGGCTCACATAGGTGCCCCACGT
CCGGAAGTTTCCCCTTCGATGGGTGTAGAACTGCTTTCTCAGAGAAATGT
GGTTCAAATC
BS13240.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14615-PA | 915 | CG14615-RA | 176..915 | 756..17 | 3700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14615-RB | 1826 | CG14615-RB | 340..1088 | 760..12 | 3715 | 99.7 | Minus |
CG14615-RA | 1356 | CG14615-RA | 428..1176 | 760..12 | 3715 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22448532..22449064 | 228..760 | 2650 | 99.8 | Plus |
X | 23542271 | X | 22447921..22448137 | 12..228 | 1070 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:09:50 has no hits.
BS13240.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:49 Download gff for
BS13240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-PA | 172..915 | 17..760 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:46 Download gff for
BS13240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-RA | 428..1176 | 12..760 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:58 Download gff for
BS13240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-RA | 428..1176 | 12..760 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:58 Download gff for
BS13240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22447921..22448136 | 12..227 | 99 | <- | Plus |
X | 22448532..22449064 | 228..760 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:46 Download gff for
BS13240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21849757..21849972 | 12..227 | 99 | <- | Plus |
arm_X | 21850368..21850900 | 228..760 | 99 | | Plus |
BS13240.5prime Sequence
741 bp (740 high quality bases) assembled on 2006-10-13
> BS13240.5prime
GAAGTTATCAGTCGACATGAGTTCAGATAAGAACGGTGATATCTTGCGGC
CACTTAGCGATAGCGAAGTGGACGAACTGCTTGATCTATACAAAGTTAAA
TTCGGTATAAGGAACTTCCACTACCTATTACTGTACAACCAGCGAAAATG
GGACCGCCAGCTGAGCGAGGCTCAAATACCGCGCAATGATCTGAACCACA
TTTCTCTGAGAAAGCAGTTCTACACCCATCGAAGGGGAAACTTCCGGACG
TGGGGCACCTATGTGAGCCTTCATCGGGACATCGTGCAGAGCGTCTCCTT
CTTCAGCTGGCAGCCAGATGGAGCCGCGGAGCTGTGGGAATGCCTGGAGC
AAACGCAGCTCATCGAGTGGACACAGGGAGCCCTGCTGACCAACGTTGAT
CTGGGATTTTGTAATCGAGTCAAAGAGTTGGCCGTCAGCCGCGGGGTCAC
CGCCATTCAACCACGCCAGTGTTTCGGGATGGTTTTGTCGCACGAGGATG
CCTTTTGTGCAAAAGTTCCAGATCTGCCCTCTGAGTTCGAGATTCGGCGA
TTGAGGGCTGAGGATGCAGCCATGGTGCACGATTCCTGGCCTAACAAGGG
TGAAGGCTCACTCACTTATCTCCAGGCGCTCGTCCGTTTCAACAAATCCT
TGGGCATCTGCCGAAGCGACACTGGGGAACTGATTGCCTGGATCTTTCAA
AACGACTTTTCCGGACTGGGCATGCTGCAAGTGCTGCCCAA
BS13240.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14615-PA | 915 | CG14615-RA | 1..725 | 17..741 | 3600 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:21:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14615-RB | 1826 | CG14615-RB | 169..893 | 17..741 | 3610 | 99.9 | Plus |
CG14615-RA | 1356 | CG14615-RA | 257..981 | 17..741 | 3610 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:21:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22448532..22449235 | 720..17 | 3505 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:21:46 has no hits.
BS13240.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:49 Download gff for
BS13240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-PA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:17:49 Download gff for
BS13240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-RA | 257..979 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:44 Download gff for
BS13240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-RA | 257..979 | 17..739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:44 Download gff for
BS13240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22448118..22448136 | 721..739 | 100 | <- | Minus |
X | 22448532..22449235 | 17..720 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:17:49 Download gff for
BS13240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21849954..21849972 | 721..739 | 100 | <- | Minus |
arm_X | 21850368..21851071 | 17..720 | 99 | | Minus |
BS13240.complete Sequence
947 bp assembled on 2006-11-01
GenBank Submission: FJ637398
> BS13240.complete
GAAGTTATCAGTCGACATGAGTTCAGATAAGAACGGTGATATCTTGCGGC
CACTTAGCGATAGCGAAGTGGACGAACTGCTTGATCTATACAAAGTTAAA
TTCGGTATAAGGAACTTCCACTACCTATTACTGTACAACCAGCGAAAATG
GGACCGCCAGCTGAGCGAGGCTCAAATACCGCGCAATGATCTGAACCACA
TTTCTCTGAGAAAGCAGTTCTACACCCATCGAAGGGGAAACTTCCGGACG
TGGGGCACCTATGTGAGCCTTCATCGGGACATCGTGCAGAGCGTCTCCTT
CTTCAGCTGGCAGCCAGATGGAGCCGCGGAGCTGTGGGAATGCCTGGAGC
AAACGCAGCTCATCGAGTGGACACAGGGAGCCCTGCTGACCAACGTTGAT
CTGGGATTTTGTAATCGAGTCAAAGAGTTGGCCGTCAGCCGCGGGGTCAC
CGCCATTCAACCACGCCAGTGTTTCGGGATGGTTTTGTCGCACGAGGATG
CCTTTTGTGCAAAAGTTCCAGATCTGCCCTCTGAGTTCGAGATTCGGCGA
TTGAGGGCTGAGGATGCAGCCATGGTGCACGATTCCTGGCCTAACAAGGG
TGAAGGCTCACTCACTTATCTCCAGGCGCTCGTCCGTTTCAACAAATCCT
TGGGCATCTGCCGAAGCGACACTGGGGAACTGATTGCCTGGATCTTTCAG
AACGACTTTTCCGGACTGGGCATGCTGCAAGTGCTGCCCAAGGCGGAGCG
TAGAGGACTAGGTGGCCTCCTAGCCGCTGCGATGAGCCGAGAAATTGCTC
GGGGCGAGGAGATCACCCTAACGGCCTGGATTGTCGCTACTAACTGGCGG
TCGGAGGCGCTGCTCAAGCGGATCGGGTACCAGAAAGATCTGGTCAATGA
GTGGATTAAGCTGGTACCGAATTCTTCATAGAAGCTTTCTAGACCAT
BS13240.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14615-RB | 915 | CG14615-PB | 1..915 | 17..931 | 4575 | 100 | Plus |
CG14615-RA | 915 | CG14615-PA | 1..915 | 17..931 | 4575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14615-RB | 1826 | CG14615-RB | 169..1088 | 17..936 | 4585 | 99.9 | Plus |
CG14615-RA | 1356 | CG14615-RA | 257..1176 | 17..936 | 4585 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22448532..22449235 | 720..17 | 3520 | 100 | Minus |
X | 23542271 | X | 22447921..22448137 | 936..720 | 1070 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:21:28 has no hits.
BS13240.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:38 Download gff for
BS13240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-RA | 1..915 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:08 Download gff for
BS13240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-RA | 257..1176 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:50 Download gff for
BS13240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-RA | 257..1171 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:38 Download gff for
BS13240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-RA | 257..1176 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:31 Download gff for
BS13240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-RA | 257..1171 | 17..931 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:31 Download gff for
BS13240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22447926..22448136 | 721..931 | 100 | <- | Minus |
X | 22448532..22449235 | 17..720 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:50 Download gff for
BS13240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21849762..21849972 | 721..931 | 100 | <- | Minus |
arm_X | 21850368..21851071 | 17..720 | 100 | | Minus |
BS13240.pep Sequence
Translation from 16 to 930
> BS13240.pep
MSSDKNGDILRPLSDSEVDELLDLYKVKFGIRNFHYLLLYNQRKWDRQLS
EAQIPRNDLNHISLRKQFYTHRRGNFRTWGTYVSLHRDIVQSVSFFSWQP
DGAAELWECLEQTQLIEWTQGALLTNVDLGFCNRVKELAVSRGVTAIQPR
QCFGMVLSHEDAFCAKVPDLPSEFEIRRLRAEDAAMVHDSWPNKGEGSLT
YLQALVRFNKSLGICRSDTGELIAWIFQNDFSGLGMLQVLPKAERRGLGG
LLAAAMSREIARGEEITLTAWIVATNWRSEALLKRIGYQKDLVNEWIKLV
PNSS*
BS13240.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14615-PB | 304 | CG14615-PB | 1..304 | 1..304 | 1600 | 100 | Plus |
CG14615-PA | 304 | CG14615-PA | 1..304 | 1..304 | 1600 | 100 | Plus |
CG17681-PA | 293 | CG17681-PA | 5..267 | 7..289 | 216 | 25.1 | Plus |
CG12560-PB | 278 | CG12560-PB | 152..269 | 170..289 | 194 | 32.2 | Plus |
CG5783-PA | 287 | CG5783-PA | 92..276 | 115..301 | 193 | 27.5 | Plus |