Clone Sequence Records
BS13241.complete Sequence
1232 bp assembled on 2009-12-07
GenBank Submission: KX803719
> BS13241.complete
GAAGTTATCAGTCGACATGGGTAGCCGGCCGCAGAGGATACGCCGGATTG
GTGATAGTCTGCAGATGCTAACCCGGGAAGCCAGAAGCGAAGTGGTACGC
TACGAACATATAGTAATATGTCTCATGGTCATGATAGCAGTATTCTCCAT
ACTATGGAACATAACGCTGATCATGATATCGGGTGATCTGTACGAGGGAA
TAGTCAGTGCCAAACTTATCTTCCGGGAGCGCAGCGTTGATAAAATGGAT
GAGTCCAGCAAGGAGATCCTTCATCGGGATTTCATCAAAGCCACCCAGTA
TGCCTATGGAAGGCAGTACTCCGTGCAGGATGTCACACCTGAATCGCTGA
AGAGCGAGAGCCAAATCTTTAAGTTACCGCATATCTACGAATCTATCGAG
AATCGACCGAAATTGGAGCGTCTCATTGCTGAAAATAAAGTGGAGGTTAT
TTCTACCACGACGACTCCTCCACCGAAGATCACTTTCAATGCTGAGGCGG
ATCGCCACTTTTTGAGCACAATGTCCATCGATGTTATGGCCACTGTCTGG
GAAAGAGGACCAGGAGCTCAGTTTGTCTACGTATTTCCCCTCATATCAGA
GATCGTGGCCATTATCTGGACAGCCATGTGTTTGATTTACCAGACAGGCA
GCAAAAAGAGCTCAGTTTTGCCGAAGCCGTGGCGCATTGTGGTGCCCTCC
ATCGTTATCTTCTCGGTGATGAGTTTGTGCAGTGTAATCTACACAATCCT
GACCAATGGCCACCTTAAGCACCTCTGTGGCCAACTGAGGGAGAATCTCA
CAGATCCCACTGCCATCACCTGCGGCGATGCCATCGCCCTGTTGCGTCCC
ATCATTCACGACCACAACGTATCCCATGATACTTATCTGGAGCTCTTCCG
CTTCAGCTACTTGATCGGAATGGTACTGTGGATAGTGGCTCTGCTGGTCA
TGGTGCTGCGTTATGTATTCGCCGTGGACTTCCAGCTGGTGGACATTGAT
GATATGTTCGATAGCGGACGAAATGGCTCTGCACAAGTTCAGATTCAACC
GGTATACACTGAGGTAGTGCAGCAGAGCAGTCCACAGCACCAGACGCAGA
TGCGTCCGAGATCGGAAGATGACTATCAGAGTGCCAGGTCGCACTTGAGC
GATCTTGCAGTTCCACTTCTGGAGGTGCAAAGCCAGTCCCAGATTCCGCC
AACTAGCTTGGCCTAAAAGCTTTCTAGACCAT
BS13241.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14253-RB | 1200 | CG14253-PB | 1..1200 | 17..1216 | 6000 | 100 | Plus |
CG14253-RF | 1173 | CG14253-PF | 64..1173 | 107..1216 | 5550 | 100 | Plus |
CG14253-RA | 1173 | CG14253-PA | 64..1173 | 107..1216 | 5550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14253-RB | 1886 | CG14253-RB | 238..1437 | 17..1216 | 6000 | 100 | Plus |
CG14253-RF | 2286 | CG14253-RF | 728..1837 | 107..1216 | 5550 | 100 | Plus |
CG14253-RA | 1981 | CG14253-RA | 423..1532 | 107..1216 | 5550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26984705..26985257 | 664..1216 | 2765 | 100 | Plus |
3R | 32079331 | 3R | 26983963..26984217 | 108..362 | 1275 | 100 | Plus |
3R | 32079331 | 3R | 26984276..26984434 | 363..521 | 795 | 100 | Plus |
3R | 32079331 | 3R | 26984490..26984636 | 517..663 | 720 | 99.3 | Plus |
3R | 32079331 | 3R | 26978778..26978868 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:40:08 has no hits.
BS13241.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:40 Download gff for
BS13241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RB | 1..1200 | 17..1216 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:20 Download gff for
BS13241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RB | 235..1432 | 17..1214 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:16 Download gff for
BS13241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RB | 238..1435 | 17..1214 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:45 Download gff for
BS13241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RB | 235..1432 | 17..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:06 Download gff for
BS13241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RB | 238..1435 | 17..1214 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:06 Download gff for
BS13241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26984495..26984636 | 522..663 | 100 | -> | Plus |
3R | 26983963..26984217 | 108..362 | 100 | -> | Plus |
3R | 26978778..26978868 | 17..107 | 100 | -> | Plus |
3R | 26984276..26984434 | 363..521 | 100 | -> | Plus |
3R | 26984705..26985255 | 664..1214 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:16 Download gff for
BS13241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22809685..22809939 | 108..362 | 100 | -> | Plus |
arm_3R | 22804500..22804590 | 17..107 | 100 | -> | Plus |
arm_3R | 22809998..22810156 | 363..521 | 100 | -> | Plus |
arm_3R | 22810217..22810358 | 522..663 | 100 | -> | Plus |
arm_3R | 22810427..22810977 | 664..1214 | 100 | | Plus |
BS13241.3prime Sequence
647 bp (614 high quality bases) assembled on 2006-10-13
> BS13241.3prime
ATGGTCTAGAAAGCTTTTAGGCCAAGCTAGTTGGCGGAATCTGGGACTGG
CTTTGCACCTCCAGAAGTGGAACTGCAAGATCGCTCAAGTGCGACCTGGC
ACTCTGATAGTCATCTTCCGATCTCGGACGCATCTGCGTCTGGTGCTGTG
GACTGCTCTGCTGCACTACCTCAGTGTATACCGGTTGAATCTGAACTTGT
GCAGAGCCATTTCGTCCGCTATCGAACATATCATCAATGTCCACCAGCTG
GAAGTCCACGGCGAATACATAACGCAGCACCATGACCAGCAGAGCCACTA
TCCACAGTACCATTCCGATCAAGTAGCTGAAGCGGAAGAGCTCCAGATAA
GTATCATGGGATACGTTGTGGTCGTGAATGATGGGACGCAACAGGGCGAT
GGCATCGCCGCAGGTGATGGCAGTGGGATCTGTGAGATTCTCCCTCAGTT
GGCCACAGAGGTGCTTAAGGTGGCCATTGGTCAGGATTGTGTAGATTACA
CTGCACAAACTCATCACCGAGAAAATAACGATGGAGGGCACCACAATGCG
CCACGGCTTCGGCAAAACTGAGCTCTTTTTGCTGCCTGTCTGGTAAATCA
AACACATGGCTGTCCAGATAATGGCCACGATCTCTGATATGAGGGGA
BS13241.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14253-PC | 1173 | CG14253-RC | 543..1173 | 647..17 | 3130 | 99.8 | Minus |
CG14253-PE | 1173 | CG14253-RE | 543..1173 | 647..17 | 3130 | 99.8 | Minus |
CG14253-PD | 1173 | CG14253-RD | 543..1173 | 647..17 | 3130 | 99.8 | Minus |
CG14253-PA | 1173 | CG14253-RA | 543..1173 | 647..17 | 3130 | 99.8 | Minus |
CG14253-PB | 1200 | CG14253-RB | 570..1200 | 647..17 | 3130 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14253-RF | 2286 | CG14253-RF | 1207..1837 | 647..17 | 3140 | 99.8 | Minus |
CG14253-RB | 1886 | CG14253-RB | 807..1437 | 647..17 | 3140 | 99.8 | Minus |
CG14253-RA | 1981 | CG14253-RA | 902..1532 | 647..17 | 3140 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:51:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26984705..26985257 | 569..17 | 2750 | 99.8 | Minus |
3R | 32079331 | 3R | 26984559..26984636 | 647..570 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:51:38 has no hits.
BS13241.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:50 Download gff for
BS13241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-PB | 571..1200 | 17..646 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:37:20 Download gff for
BS13241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RA | 903..1536 | 12..646 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:10:02 Download gff for
BS13241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RA | 903..1536 | 12..646 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:10:02 Download gff for
BS13241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26984560..26984636 | 570..646 | 100 | -> | Minus |
3R | 26984705..26985261 | 12..569 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:37:20 Download gff for
BS13241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22810282..22810358 | 570..646 | 100 | -> | Minus |
arm_3R | 22810427..22810983 | 12..569 | 99 | | Minus |
BS13241.5prime Sequence
652 bp (649 high quality bases) assembled on 2006-10-13
> BS13241.5prime
GAAGTTATCAGTCGACATGGGTAGCCGGCCGCAGAGGATACGCCGGATTG
GTGATAGTCTGCAGATGCTAACCCGGGAAGCCAGAAGCGAAGTGGTACGC
TACGAACATATAGTAATATGTCTCATGGTCATGATAGCAGTATTCTCCAT
ACTATGGAACATAACGCTGATCATGATATCGGGTGATCTGTACGAGGGAA
TAGTCAGTGCCAAACTTATCTTCCGGGAGCGCAGCGTTGATAAAATGGAT
GAGTCCAGCAAGGAGATCCTTCATCGGGATTTCATCAAAGCCACCCAGTA
TGCCTATGGAAGGCAGTACTCCGTGCAGGATGTCACACCTGAATCGCTGA
AGAGCGAGAGCCAAATCTTTAAGTTACCGCATATCTACGAATCTATCGAG
AATCGACCGAAATTGGAGCGTCTCATTGCTGAAAATAAAGTGGAGGTTAT
TTCTACCACGACGACTCCTCCACCGAAGATCACTTTCAATGCTGAGGCGG
ATCGCCACTTTTTGAGCACAATGTCCATCGATGTTATGGCCACTGTCTGG
GAAAGAGGACCAGGAGCTCAGTTTGTCTACGTATTTCCCCTCATATCAGA
GATCGTGGCCATTATCTGGACAGCCATGTGTTTGATTTACCAGACAGGCA
GC
BS13241.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:46:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14253-PB | 1200 | CG14253-RB | 1..636 | 17..652 | 3180 | 100 | Plus |
CG14253-PC | 1173 | CG14253-RC | 64..609 | 107..652 | 2730 | 100 | Plus |
CG14253-PE | 1173 | CG14253-RE | 64..609 | 107..652 | 2730 | 100 | Plus |
CG14253-PD | 1173 | CG14253-RD | 64..609 | 107..652 | 2730 | 100 | Plus |
CG14253-PA | 1173 | CG14253-RA | 64..609 | 107..652 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14253-RB | 1886 | CG14253-RB | 238..873 | 17..652 | 3180 | 100 | Plus |
CG14253-RF | 2286 | CG14253-RF | 728..1273 | 107..652 | 2730 | 100 | Plus |
CG14253-RA | 1981 | CG14253-RA | 423..968 | 107..652 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:48:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26983963..26984217 | 108..362 | 1275 | 100 | Plus |
3R | 32079331 | 3R | 26984276..26984434 | 363..521 | 795 | 100 | Plus |
3R | 32079331 | 3R | 26984490..26984625 | 517..652 | 665 | 99.3 | Plus |
3R | 32079331 | 3R | 26978778..26978868 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:48:29 has no hits.
BS13241.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:50 Download gff for
BS13241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-PB | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:54:24 Download gff for
BS13241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RB | 231..873 | 7..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:22 Download gff for
BS13241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RB | 231..873 | 7..652 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:22 Download gff for
BS13241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26983963..26984217 | 108..362 | 100 | -> | Plus |
3R | 26984276..26984434 | 363..521 | 100 | -> | Plus |
3R | 26984495..26984625 | 522..652 | 100 | | Plus |
3R | 26978771..26978868 | 7..107 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:54:24 Download gff for
BS13241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22804493..22804590 | 7..107 | 96 | -> | Plus |
arm_3R | 22809685..22809939 | 108..362 | 100 | -> | Plus |
arm_3R | 22809998..22810156 | 363..521 | 100 | -> | Plus |
arm_3R | 22810217..22810347 | 522..652 | 100 | | Plus |
BS13241.pep Sequence
Translation from 16 to 1215
> BS13241.pep
MGSRPQRIRRIGDSLQMLTREARSEVVRYEHIVICLMVMIAVFSILWNIT
LIMISGDLYEGIVSAKLIFRERSVDKMDESSKEILHRDFIKATQYAYGRQ
YSVQDVTPESLKSESQIFKLPHIYESIENRPKLERLIAENKVEVISTTTT
PPPKITFNAEADRHFLSTMSIDVMATVWERGPGAQFVYVFPLISEIVAII
WTAMCLIYQTGSKKSSVLPKPWRIVVPSIVIFSVMSLCSVIYTILTNGHL
KHLCGQLRENLTDPTAITCGDAIALLRPIIHDHNVSHDTYLELFRFSYLI
GMVLWIVALLVMVLRYVFAVDFQLVDIDDMFDSGRNGSAQVQIQPVYTEV
VQQSSPQHQTQMRPRSEDDYQSARSHLSDLAVPLLEVQSQSQIPPTSLA*
BS13241.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14253-PB | 399 | CG14253-PB | 1..399 | 1..399 | 2031 | 100 | Plus |
CG14253-PF | 390 | CG14253-PF | 15..390 | 24..399 | 1892 | 98.4 | Plus |
CG14253-PA | 390 | CG14253-PA | 15..390 | 24..399 | 1892 | 98.4 | Plus |
CG14253-PD | 390 | CG14253-PD | 15..390 | 24..399 | 1892 | 98.4 | Plus |
CG14253-PE | 390 | CG14253-PE | 15..390 | 24..399 | 1892 | 98.4 | Plus |