Clone BS13241 Report

Search the DGRC for BS13241

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG14253-RB
Protein status:BS13241.pep: full length peptide match
Sequenced Size:1232

Clone Sequence Records

BS13241.complete Sequence

1232 bp assembled on 2009-12-07

GenBank Submission: KX803719

> BS13241.complete
GAAGTTATCAGTCGACATGGGTAGCCGGCCGCAGAGGATACGCCGGATTG
GTGATAGTCTGCAGATGCTAACCCGGGAAGCCAGAAGCGAAGTGGTACGC
TACGAACATATAGTAATATGTCTCATGGTCATGATAGCAGTATTCTCCAT
ACTATGGAACATAACGCTGATCATGATATCGGGTGATCTGTACGAGGGAA
TAGTCAGTGCCAAACTTATCTTCCGGGAGCGCAGCGTTGATAAAATGGAT
GAGTCCAGCAAGGAGATCCTTCATCGGGATTTCATCAAAGCCACCCAGTA
TGCCTATGGAAGGCAGTACTCCGTGCAGGATGTCACACCTGAATCGCTGA
AGAGCGAGAGCCAAATCTTTAAGTTACCGCATATCTACGAATCTATCGAG
AATCGACCGAAATTGGAGCGTCTCATTGCTGAAAATAAAGTGGAGGTTAT
TTCTACCACGACGACTCCTCCACCGAAGATCACTTTCAATGCTGAGGCGG
ATCGCCACTTTTTGAGCACAATGTCCATCGATGTTATGGCCACTGTCTGG
GAAAGAGGACCAGGAGCTCAGTTTGTCTACGTATTTCCCCTCATATCAGA
GATCGTGGCCATTATCTGGACAGCCATGTGTTTGATTTACCAGACAGGCA
GCAAAAAGAGCTCAGTTTTGCCGAAGCCGTGGCGCATTGTGGTGCCCTCC
ATCGTTATCTTCTCGGTGATGAGTTTGTGCAGTGTAATCTACACAATCCT
GACCAATGGCCACCTTAAGCACCTCTGTGGCCAACTGAGGGAGAATCTCA
CAGATCCCACTGCCATCACCTGCGGCGATGCCATCGCCCTGTTGCGTCCC
ATCATTCACGACCACAACGTATCCCATGATACTTATCTGGAGCTCTTCCG
CTTCAGCTACTTGATCGGAATGGTACTGTGGATAGTGGCTCTGCTGGTCA
TGGTGCTGCGTTATGTATTCGCCGTGGACTTCCAGCTGGTGGACATTGAT
GATATGTTCGATAGCGGACGAAATGGCTCTGCACAAGTTCAGATTCAACC
GGTATACACTGAGGTAGTGCAGCAGAGCAGTCCACAGCACCAGACGCAGA
TGCGTCCGAGATCGGAAGATGACTATCAGAGTGCCAGGTCGCACTTGAGC
GATCTTGCAGTTCCACTTCTGGAGGTGCAAAGCCAGTCCCAGATTCCGCC
AACTAGCTTGGCCTAAAAGCTTTCTAGACCAT

BS13241.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-RB 1200 CG14253-PB 1..1200 17..1216 6000 100 Plus
CG14253-RF 1173 CG14253-PF 64..1173 107..1216 5550 100 Plus
CG14253-RA 1173 CG14253-PA 64..1173 107..1216 5550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-RB 1886 CG14253-RB 238..1437 17..1216 6000 100 Plus
CG14253-RF 2286 CG14253-RF 728..1837 107..1216 5550 100 Plus
CG14253-RA 1981 CG14253-RA 423..1532 107..1216 5550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26984705..26985257 664..1216 2765 100 Plus
3R 32079331 3R 26983963..26984217 108..362 1275 100 Plus
3R 32079331 3R 26984276..26984434 363..521 795 100 Plus
3R 32079331 3R 26984490..26984636 517..663 720 99.3 Plus
3R 32079331 3R 26978778..26978868 17..107 455 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:40:08 has no hits.

BS13241.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:40 Download gff for BS13241.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 1..1200 17..1216 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:20 Download gff for BS13241.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 235..1432 17..1214 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:16 Download gff for BS13241.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 238..1435 17..1214 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:45 Download gff for BS13241.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 235..1432 17..1214 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:06 Download gff for BS13241.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 238..1435 17..1214 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:06 Download gff for BS13241.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26984495..26984636 522..663 100 -> Plus
3R 26983963..26984217 108..362 100 -> Plus
3R 26978778..26978868 17..107 100 -> Plus
3R 26984276..26984434 363..521 100 -> Plus
3R 26984705..26985255 664..1214 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:16 Download gff for BS13241.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22809685..22809939 108..362 100 -> Plus
arm_3R 22804500..22804590 17..107 100 -> Plus
arm_3R 22809998..22810156 363..521 100 -> Plus
arm_3R 22810217..22810358 522..663 100 -> Plus
arm_3R 22810427..22810977 664..1214 100   Plus

BS13241.3prime Sequence

647 bp (614 high quality bases) assembled on 2006-10-13

> BS13241.3prime
ATGGTCTAGAAAGCTTTTAGGCCAAGCTAGTTGGCGGAATCTGGGACTGG
CTTTGCACCTCCAGAAGTGGAACTGCAAGATCGCTCAAGTGCGACCTGGC
ACTCTGATAGTCATCTTCCGATCTCGGACGCATCTGCGTCTGGTGCTGTG
GACTGCTCTGCTGCACTACCTCAGTGTATACCGGTTGAATCTGAACTTGT
GCAGAGCCATTTCGTCCGCTATCGAACATATCATCAATGTCCACCAGCTG
GAAGTCCACGGCGAATACATAACGCAGCACCATGACCAGCAGAGCCACTA
TCCACAGTACCATTCCGATCAAGTAGCTGAAGCGGAAGAGCTCCAGATAA
GTATCATGGGATACGTTGTGGTCGTGAATGATGGGACGCAACAGGGCGAT
GGCATCGCCGCAGGTGATGGCAGTGGGATCTGTGAGATTCTCCCTCAGTT
GGCCACAGAGGTGCTTAAGGTGGCCATTGGTCAGGATTGTGTAGATTACA
CTGCACAAACTCATCACCGAGAAAATAACGATGGAGGGCACCACAATGCG
CCACGGCTTCGGCAAAACTGAGCTCTTTTTGCTGCCTGTCTGGTAAATCA
AACACATGGCTGTCCAGATAATGGCCACGATCTCTGATATGAGGGGA

BS13241.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-PC 1173 CG14253-RC 543..1173 647..17 3130 99.8 Minus
CG14253-PE 1173 CG14253-RE 543..1173 647..17 3130 99.8 Minus
CG14253-PD 1173 CG14253-RD 543..1173 647..17 3130 99.8 Minus
CG14253-PA 1173 CG14253-RA 543..1173 647..17 3130 99.8 Minus
CG14253-PB 1200 CG14253-RB 570..1200 647..17 3130 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-RF 2286 CG14253-RF 1207..1837 647..17 3140 99.8 Minus
CG14253-RB 1886 CG14253-RB 807..1437 647..17 3140 99.8 Minus
CG14253-RA 1981 CG14253-RA 902..1532 647..17 3140 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26984705..26985257 569..17 2750 99.8 Minus
3R 32079331 3R 26984559..26984636 647..570 390 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:51:38 has no hits.

BS13241.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:50 Download gff for BS13241.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14253-PB 571..1200 17..646 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:37:20 Download gff for BS13241.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14253-RA 903..1536 12..646 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:10:02 Download gff for BS13241.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14253-RA 903..1536 12..646 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:10:02 Download gff for BS13241.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26984560..26984636 570..646 100 -> Minus
3R 26984705..26985261 12..569 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:37:20 Download gff for BS13241.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22810282..22810358 570..646 100 -> Minus
arm_3R 22810427..22810983 12..569 99   Minus

BS13241.5prime Sequence

652 bp (649 high quality bases) assembled on 2006-10-13

> BS13241.5prime
GAAGTTATCAGTCGACATGGGTAGCCGGCCGCAGAGGATACGCCGGATTG
GTGATAGTCTGCAGATGCTAACCCGGGAAGCCAGAAGCGAAGTGGTACGC
TACGAACATATAGTAATATGTCTCATGGTCATGATAGCAGTATTCTCCAT
ACTATGGAACATAACGCTGATCATGATATCGGGTGATCTGTACGAGGGAA
TAGTCAGTGCCAAACTTATCTTCCGGGAGCGCAGCGTTGATAAAATGGAT
GAGTCCAGCAAGGAGATCCTTCATCGGGATTTCATCAAAGCCACCCAGTA
TGCCTATGGAAGGCAGTACTCCGTGCAGGATGTCACACCTGAATCGCTGA
AGAGCGAGAGCCAAATCTTTAAGTTACCGCATATCTACGAATCTATCGAG
AATCGACCGAAATTGGAGCGTCTCATTGCTGAAAATAAAGTGGAGGTTAT
TTCTACCACGACGACTCCTCCACCGAAGATCACTTTCAATGCTGAGGCGG
ATCGCCACTTTTTGAGCACAATGTCCATCGATGTTATGGCCACTGTCTGG
GAAAGAGGACCAGGAGCTCAGTTTGTCTACGTATTTCCCCTCATATCAGA
GATCGTGGCCATTATCTGGACAGCCATGTGTTTGATTTACCAGACAGGCA
GC

BS13241.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-PB 1200 CG14253-RB 1..636 17..652 3180 100 Plus
CG14253-PC 1173 CG14253-RC 64..609 107..652 2730 100 Plus
CG14253-PE 1173 CG14253-RE 64..609 107..652 2730 100 Plus
CG14253-PD 1173 CG14253-RD 64..609 107..652 2730 100 Plus
CG14253-PA 1173 CG14253-RA 64..609 107..652 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-RB 1886 CG14253-RB 238..873 17..652 3180 100 Plus
CG14253-RF 2286 CG14253-RF 728..1273 107..652 2730 100 Plus
CG14253-RA 1981 CG14253-RA 423..968 107..652 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26983963..26984217 108..362 1275 100 Plus
3R 32079331 3R 26984276..26984434 363..521 795 100 Plus
3R 32079331 3R 26984490..26984625 517..652 665 99.3 Plus
3R 32079331 3R 26978778..26978868 17..107 455 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:48:29 has no hits.

BS13241.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:50 Download gff for BS13241.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14253-PB 1..636 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:54:24 Download gff for BS13241.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 231..873 7..652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:22 Download gff for BS13241.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 231..873 7..652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:22 Download gff for BS13241.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26983963..26984217 108..362 100 -> Plus
3R 26984276..26984434 363..521 100 -> Plus
3R 26984495..26984625 522..652 100   Plus
3R 26978771..26978868 7..107 96 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:54:24 Download gff for BS13241.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22804493..22804590 7..107 96 -> Plus
arm_3R 22809685..22809939 108..362 100 -> Plus
arm_3R 22809998..22810156 363..521 100 -> Plus
arm_3R 22810217..22810347 522..652 100   Plus

BS13241.pep Sequence

Translation from 16 to 1215

> BS13241.pep
MGSRPQRIRRIGDSLQMLTREARSEVVRYEHIVICLMVMIAVFSILWNIT
LIMISGDLYEGIVSAKLIFRERSVDKMDESSKEILHRDFIKATQYAYGRQ
YSVQDVTPESLKSESQIFKLPHIYESIENRPKLERLIAENKVEVISTTTT
PPPKITFNAEADRHFLSTMSIDVMATVWERGPGAQFVYVFPLISEIVAII
WTAMCLIYQTGSKKSSVLPKPWRIVVPSIVIFSVMSLCSVIYTILTNGHL
KHLCGQLRENLTDPTAITCGDAIALLRPIIHDHNVSHDTYLELFRFSYLI
GMVLWIVALLVMVLRYVFAVDFQLVDIDDMFDSGRNGSAQVQIQPVYTEV
VQQSSPQHQTQMRPRSEDDYQSARSHLSDLAVPLLEVQSQSQIPPTSLA*

BS13241.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-PB 399 CG14253-PB 1..399 1..399 2031 100 Plus
CG14253-PF 390 CG14253-PF 15..390 24..399 1892 98.4 Plus
CG14253-PA 390 CG14253-PA 15..390 24..399 1892 98.4 Plus
CG14253-PD 390 CG14253-PD 15..390 24..399 1892 98.4 Plus
CG14253-PE 390 CG14253-PE 15..390 24..399 1892 98.4 Plus