Clone BS13242 Report

Search the DGRC for BS13242

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG10075-RA
Protein status:BS13242.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13242.3prime Sequence

596 bp (570 high quality bases) assembled on 2006-10-13

> BS13242.3prime
ATGGTCTAGAAAGCTTTTAAACCTTGCACTTGTCCAATTCCAACCATGCC
ACTTTCGGCTTGACAATGAACTGATCGCGTGGCAAACTGTCCAGCATGCT
GGCCTGCTGGCGGACGTACTTCACCAGTCGCTCGATCTGCGCGTAATCAT
CACAGTTCATCTCGAAGAAGCGGCGCCACAAGGCGCAGGCCAAAACCCGA
TCGTCGGACATGATGCCCTCGTCGTAGGCGATTAGGGCCGCTTGGAACTG
CTCGGATAAGGTCTCGATTTGCTGACGGGTGCGTGAAGGATTGTGAGCTC
CCAATTTCTTGGCGCGTGTGTTAACATCTCCCCACATCGCCTCCACAATG
CAGTTGCGCAGGAAGCGTCCATCCTCGCCCGTTTCGGAGCCCTCGGCCAT
GGAGCGCATCAGGAGTAGCCAAACATGCAGTTCGGTGACCAAGAACCAGG
AGTTAAAGGTATTGGGCAGATTGAAGTCGCGGAAAAAGGTCACATAGTTG
ATCTTGTCGGCGACGCTTTCGTACAGCAGATGACTGGTTACCTTGAGGCG
CGCCTTTGTGTTCGGTGTGAAGCCCACTTTGTTGAACACTCTCTTC

BS13242.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10075-PA 780 CG10075-RA 201..780 596..17 2850 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10075-RA 924 CG10075-RA 288..867 596..17 2870 99.7 Minus
CG9948-RB 1394 CG9948-RB 957..1238 17..298 1395 99.6 Plus
CG9948-RB 1394 CG9948-RB 1305..1394 298..387 450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6957003..6957284 17..298 1395 99.6 Plus
3L 28110227 3L 6957351..6957604 298..551 1270 100 Plus
3L 28110227 3L 6957663..6957708 551..596 215 97.8 Plus
Blast to na_te.dros performed on 2015-01-30 18:10:01 has no hits.

BS13242.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:51 Download gff for BS13242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10075-PA 201..780 17..596 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:48 Download gff for BS13242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 288..871 11..596 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:09:01 Download gff for BS13242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 288..871 11..596 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:09:01 Download gff for BS13242.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6956999..6957284 11..298 98 <- Plus
3L 6957352..6957603 299..550 100 <- Plus
3L 6957663..6957708 551..596 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:48 Download gff for BS13242.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6950099..6950384 11..298 98 <- Plus
arm_3L 6950452..6950703 299..550 100 <- Plus
arm_3L 6950763..6950808 551..596 97   Plus

BS13242.5prime Sequence

692 bp (592 high quality bases) assembled on 2006-10-13

> BS13242.5prime
GAAGTTATCAGTCGACATGCAGTGCACTCGTGCAGTTGCAAGACTGGCCG
GCGGCCTAGCGAGAACCGCATGGGCAACACAACATACGTATAAGCACAGG
CCAGCGATACTGGGACTGCTGGAGCAGCCATGCCGCTTGTGTTCATCCAC
CGGCGTTGTGGATAATACCAATAAAACGAAACCCGGCACAGCGGAAGCCG
CAGAAGGCGGTATTCTGAAGAGAGTGCTCAACAAAGTGGGCTTCACACCG
AACACAAAGGCGCGCCTCAAGGTAACCAGTCATCTGCTGTACGAAAGCGT
CGCCGACAAGATCAACTATGTGACCTTTTTCCGCGACTTCAATCTGCCCA
ATACCTTTAACTCCTGGTTCTTGGTCACCGAACTGCATGTTTGGCTACTC
CTGATGCGCTCCATGGCCGAGGGCTCCGAAACGGGCGAGGATGGACGCTT
CCTGCGCAACTGCATTGTGGAGGCGATGTGGGGAGATGTTAACACACGCG
CCAAGAAATTGGGAGCTCACAATCCTTCACGCACCCGTCAGCAAATCGAG
ACCTTATCCGAGCAGTTCCAAGCGGCCCTAATCGCCTACGACGAGGGCAT
CATGTCCGACGATCGGGTTTTGGCCTGCGCCTTGTGGCGCCGCTTCTTCG
AGATGAACTGTGATGATTACGCGCAAATCGAGCGACTGGTGA

BS13242.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10075-PA 780 CG10075-RA 1..676 17..692 3355 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10075-RA 924 CG10075-RA 88..763 17..692 3365 99.9 Plus
CG9948-RB 1394 CG9948-RB 1061..1238 692..515 875 99.4 Minus
CG9948-RB 1394 CG9948-RB 1305..1394 515..426 450 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6957351..6957604 515..262 1270 100 Minus
3L 28110227 3L 6957663..6957852 262..73 950 100 Minus
3L 28110227 3L 6957107..6957284 692..515 875 99.4 Minus
3L 28110227 3L 6957964..6958021 74..17 290 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:54:48 has no hits.

BS13242.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:51 Download gff for BS13242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10075-PA 1..675 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:14 Download gff for BS13242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 86..762 14..691 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:33 Download gff for BS13242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 86..762 14..691 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:33 Download gff for BS13242.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6957663..6957851 74..262 100 <- Minus
3L 6957352..6957603 263..514 100 <- Minus
3L 6957965..6958023 14..73 98   Minus
3L 6957108..6957284 515..691 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:14 Download gff for BS13242.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6950208..6950384 515..691 99 <- Minus
arm_3L 6950452..6950703 263..514 100 <- Minus
arm_3L 6950763..6950951 74..262 100 <- Minus
arm_3L 6951065..6951123 14..73 98   Minus

BS13242.complete Sequence

812 bp assembled on 2006-11-01

GenBank Submission: FJ637399

> BS13242.complete
GAAGTTATCAGTCGACATGCAGTGCACTCGTGCAGTTGCAAGACTGGCCG
GCGGCCTAGCGAGAACCGCATGGGCAACACAACATACGTATAAGCACAGG
CCAGCGATACTGGGACTGCTGGAGCAGCCATGCCGCTTGTGTTCATCCAC
CGGCGTTGTGGATAATACCAATAAAACGAAACCCGGCACAGCGGAAGCCG
CAGAAGGCGGTATTCTGAAGAGAGTGCTCAACAAAGTGGGCTTCACACCG
AACACAAAGGCGCGCCTCAAGGTAACCAGTCATCTGCTGTACGAAAGCGT
CGCCGACAAGATCAACTATGTGACCTTTTTCCGCGACTTCAATCTGCCCA
ATACCTTTAACTCCTGGTTCTTGGTCACCGAACTGCATGTTTGGCTACTC
CTGATGCGCTCCATGGCCGAGGGCTCCGAAACGGGCGAGGATGGACGCTT
CCTGCGCAACTGCATTGTGGAGGCGATGTGGGGAGATGTTAACACACGCG
CCAAGAAATTGGGAGCTCACAATCCTTCACGCACCCGTCAGCAAATCGAG
ACCTTATCCGAGCAGTTCCAAGCGGCCCTAATCGCCTACGACGAGGGCAT
CATGTCCGACGATCGGGTTTTGGCCTGCGCCTTGTGGCGCCGCTTCTTCG
AGATGAACTGTGATGATTACGCGCAGATCGAGCGACTGGTGAAGTACGTC
CGCCAGCAGGCCAGCATGCTGGACAGTTTGCCACGCGATCAGTTCATTGT
CAAGCCGAAAGTGGCATGGTTGGAATTGGACAAGTGCAAGGTTTAAAAGC
TTTCTAGACCAT

BS13242.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10075-RA 780 CG10075-PA 1..780 17..796 3885 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10075-RA 924 CG10075-RA 88..867 17..796 3885 99.9 Plus
CG9948-RB 1394 CG9948-RB 957..1238 796..515 1395 99.6 Minus
CG9948-RB 1394 CG9948-RB 1305..1394 515..426 450 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6957003..6957284 796..515 1395 99.6 Minus
3L 28110227 3L 6957351..6957604 515..262 1270 100 Minus
3L 28110227 3L 6957663..6957852 262..73 950 100 Minus
3L 28110227 3L 6957964..6958021 74..17 290 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:50:51 has no hits.

BS13242.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:43 Download gff for BS13242.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 1..780 17..796 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:29 Download gff for BS13242.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 77..862 14..802 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:12 Download gff for BS13242.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 88..865 17..794 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:43 Download gff for BS13242.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 77..862 14..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:53 Download gff for BS13242.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 88..865 17..794 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:53 Download gff for BS13242.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6957005..6957284 515..794 99 <- Minus
3L 6957352..6957603 263..514 100 <- Minus
3L 6957663..6957851 74..262 100 <- Minus
3L 6957965..6958021 17..73 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:12 Download gff for BS13242.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6950105..6950384 515..794 99 <- Minus
arm_3L 6950452..6950703 263..514 100 <- Minus
arm_3L 6950763..6950951 74..262 100 <- Minus
arm_3L 6951065..6951121 17..73 100   Minus

BS13242.pep Sequence

Translation from 16 to 795

> BS13242.pep
MQCTRAVARLAGGLARTAWATQHTYKHRPAILGLLEQPCRLCSSTGVVDN
TNKTKPGTAEAAEGGILKRVLNKVGFTPNTKARLKVTSHLLYESVADKIN
YVTFFRDFNLPNTFNSWFLVTELHVWLLLMRSMAEGSETGEDGRFLRNCI
VEAMWGDVNTRAKKLGAHNPSRTRQQIETLSEQFQAALIAYDEGIMSDDR
VLACALWRRFFEMNCDDYAQIERLVKYVRQQASMLDSLPRDQFIVKPKVA
WLELDKCKV*

BS13242.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10075-PA 259 CG10075-PA 1..259 1..259 1361 100 Plus