Clone Sequence Records
BS13242.3prime Sequence
596 bp (570 high quality bases) assembled on 2006-10-13
> BS13242.3prime
ATGGTCTAGAAAGCTTTTAAACCTTGCACTTGTCCAATTCCAACCATGCC
ACTTTCGGCTTGACAATGAACTGATCGCGTGGCAAACTGTCCAGCATGCT
GGCCTGCTGGCGGACGTACTTCACCAGTCGCTCGATCTGCGCGTAATCAT
CACAGTTCATCTCGAAGAAGCGGCGCCACAAGGCGCAGGCCAAAACCCGA
TCGTCGGACATGATGCCCTCGTCGTAGGCGATTAGGGCCGCTTGGAACTG
CTCGGATAAGGTCTCGATTTGCTGACGGGTGCGTGAAGGATTGTGAGCTC
CCAATTTCTTGGCGCGTGTGTTAACATCTCCCCACATCGCCTCCACAATG
CAGTTGCGCAGGAAGCGTCCATCCTCGCCCGTTTCGGAGCCCTCGGCCAT
GGAGCGCATCAGGAGTAGCCAAACATGCAGTTCGGTGACCAAGAACCAGG
AGTTAAAGGTATTGGGCAGATTGAAGTCGCGGAAAAAGGTCACATAGTTG
ATCTTGTCGGCGACGCTTTCGTACAGCAGATGACTGGTTACCTTGAGGCG
CGCCTTTGTGTTCGGTGTGAAGCCCACTTTGTTGAACACTCTCTTC
BS13242.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10075-PA | 780 | CG10075-RA | 201..780 | 596..17 | 2850 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10075-RA | 924 | CG10075-RA | 288..867 | 596..17 | 2870 | 99.7 | Minus |
CG9948-RB | 1394 | CG9948-RB | 957..1238 | 17..298 | 1395 | 99.6 | Plus |
CG9948-RB | 1394 | CG9948-RB | 1305..1394 | 298..387 | 450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:09:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6957003..6957284 | 17..298 | 1395 | 99.6 | Plus |
3L | 28110227 | 3L | 6957351..6957604 | 298..551 | 1270 | 100 | Plus |
3L | 28110227 | 3L | 6957663..6957708 | 551..596 | 215 | 97.8 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:10:01 has no hits.
BS13242.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:51 Download gff for
BS13242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-PA | 201..780 | 17..596 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:48 Download gff for
BS13242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-RA | 288..871 | 11..596 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:09:01 Download gff for
BS13242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-RA | 288..871 | 11..596 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:09:01 Download gff for
BS13242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6956999..6957284 | 11..298 | 98 | <- | Plus |
3L | 6957352..6957603 | 299..550 | 100 | <- | Plus |
3L | 6957663..6957708 | 551..596 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:48 Download gff for
BS13242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6950099..6950384 | 11..298 | 98 | <- | Plus |
arm_3L | 6950452..6950703 | 299..550 | 100 | <- | Plus |
arm_3L | 6950763..6950808 | 551..596 | 97 | | Plus |
BS13242.5prime Sequence
692 bp (592 high quality bases) assembled on 2006-10-13
> BS13242.5prime
GAAGTTATCAGTCGACATGCAGTGCACTCGTGCAGTTGCAAGACTGGCCG
GCGGCCTAGCGAGAACCGCATGGGCAACACAACATACGTATAAGCACAGG
CCAGCGATACTGGGACTGCTGGAGCAGCCATGCCGCTTGTGTTCATCCAC
CGGCGTTGTGGATAATACCAATAAAACGAAACCCGGCACAGCGGAAGCCG
CAGAAGGCGGTATTCTGAAGAGAGTGCTCAACAAAGTGGGCTTCACACCG
AACACAAAGGCGCGCCTCAAGGTAACCAGTCATCTGCTGTACGAAAGCGT
CGCCGACAAGATCAACTATGTGACCTTTTTCCGCGACTTCAATCTGCCCA
ATACCTTTAACTCCTGGTTCTTGGTCACCGAACTGCATGTTTGGCTACTC
CTGATGCGCTCCATGGCCGAGGGCTCCGAAACGGGCGAGGATGGACGCTT
CCTGCGCAACTGCATTGTGGAGGCGATGTGGGGAGATGTTAACACACGCG
CCAAGAAATTGGGAGCTCACAATCCTTCACGCACCCGTCAGCAAATCGAG
ACCTTATCCGAGCAGTTCCAAGCGGCCCTAATCGCCTACGACGAGGGCAT
CATGTCCGACGATCGGGTTTTGGCCTGCGCCTTGTGGCGCCGCTTCTTCG
AGATGAACTGTGATGATTACGCGCAAATCGAGCGACTGGTGA
BS13242.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10075-PA | 780 | CG10075-RA | 1..676 | 17..692 | 3355 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10075-RA | 924 | CG10075-RA | 88..763 | 17..692 | 3365 | 99.9 | Plus |
CG9948-RB | 1394 | CG9948-RB | 1061..1238 | 692..515 | 875 | 99.4 | Minus |
CG9948-RB | 1394 | CG9948-RB | 1305..1394 | 515..426 | 450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6957351..6957604 | 515..262 | 1270 | 100 | Minus |
3L | 28110227 | 3L | 6957663..6957852 | 262..73 | 950 | 100 | Minus |
3L | 28110227 | 3L | 6957107..6957284 | 692..515 | 875 | 99.4 | Minus |
3L | 28110227 | 3L | 6957964..6958021 | 74..17 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:54:48 has no hits.
BS13242.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:51 Download gff for
BS13242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-PA | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:14 Download gff for
BS13242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-RA | 86..762 | 14..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:33 Download gff for
BS13242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-RA | 86..762 | 14..691 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:33 Download gff for
BS13242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6957663..6957851 | 74..262 | 100 | <- | Minus |
3L | 6957352..6957603 | 263..514 | 100 | <- | Minus |
3L | 6957965..6958023 | 14..73 | 98 | | Minus |
3L | 6957108..6957284 | 515..691 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:14 Download gff for
BS13242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6950208..6950384 | 515..691 | 99 | <- | Minus |
arm_3L | 6950452..6950703 | 263..514 | 100 | <- | Minus |
arm_3L | 6950763..6950951 | 74..262 | 100 | <- | Minus |
arm_3L | 6951065..6951123 | 14..73 | 98 | | Minus |
BS13242.complete Sequence
812 bp assembled on 2006-11-01
GenBank Submission: FJ637399
> BS13242.complete
GAAGTTATCAGTCGACATGCAGTGCACTCGTGCAGTTGCAAGACTGGCCG
GCGGCCTAGCGAGAACCGCATGGGCAACACAACATACGTATAAGCACAGG
CCAGCGATACTGGGACTGCTGGAGCAGCCATGCCGCTTGTGTTCATCCAC
CGGCGTTGTGGATAATACCAATAAAACGAAACCCGGCACAGCGGAAGCCG
CAGAAGGCGGTATTCTGAAGAGAGTGCTCAACAAAGTGGGCTTCACACCG
AACACAAAGGCGCGCCTCAAGGTAACCAGTCATCTGCTGTACGAAAGCGT
CGCCGACAAGATCAACTATGTGACCTTTTTCCGCGACTTCAATCTGCCCA
ATACCTTTAACTCCTGGTTCTTGGTCACCGAACTGCATGTTTGGCTACTC
CTGATGCGCTCCATGGCCGAGGGCTCCGAAACGGGCGAGGATGGACGCTT
CCTGCGCAACTGCATTGTGGAGGCGATGTGGGGAGATGTTAACACACGCG
CCAAGAAATTGGGAGCTCACAATCCTTCACGCACCCGTCAGCAAATCGAG
ACCTTATCCGAGCAGTTCCAAGCGGCCCTAATCGCCTACGACGAGGGCAT
CATGTCCGACGATCGGGTTTTGGCCTGCGCCTTGTGGCGCCGCTTCTTCG
AGATGAACTGTGATGATTACGCGCAGATCGAGCGACTGGTGAAGTACGTC
CGCCAGCAGGCCAGCATGCTGGACAGTTTGCCACGCGATCAGTTCATTGT
CAAGCCGAAAGTGGCATGGTTGGAATTGGACAAGTGCAAGGTTTAAAAGC
TTTCTAGACCAT
BS13242.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10075-RA | 780 | CG10075-PA | 1..780 | 17..796 | 3885 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10075-RA | 924 | CG10075-RA | 88..867 | 17..796 | 3885 | 99.9 | Plus |
CG9948-RB | 1394 | CG9948-RB | 957..1238 | 796..515 | 1395 | 99.6 | Minus |
CG9948-RB | 1394 | CG9948-RB | 1305..1394 | 515..426 | 450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6957003..6957284 | 796..515 | 1395 | 99.6 | Minus |
3L | 28110227 | 3L | 6957351..6957604 | 515..262 | 1270 | 100 | Minus |
3L | 28110227 | 3L | 6957663..6957852 | 262..73 | 950 | 100 | Minus |
3L | 28110227 | 3L | 6957964..6958021 | 74..17 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:50:51 has no hits.
BS13242.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:43 Download gff for
BS13242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-RA | 1..780 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:29 Download gff for
BS13242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-RA | 77..862 | 14..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:12 Download gff for
BS13242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-RA | 88..865 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:43 Download gff for
BS13242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-RA | 77..862 | 14..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:53 Download gff for
BS13242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-RA | 88..865 | 17..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:53 Download gff for
BS13242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6957005..6957284 | 515..794 | 99 | <- | Minus |
3L | 6957352..6957603 | 263..514 | 100 | <- | Minus |
3L | 6957663..6957851 | 74..262 | 100 | <- | Minus |
3L | 6957965..6958021 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:12 Download gff for
BS13242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6950105..6950384 | 515..794 | 99 | <- | Minus |
arm_3L | 6950452..6950703 | 263..514 | 100 | <- | Minus |
arm_3L | 6950763..6950951 | 74..262 | 100 | <- | Minus |
arm_3L | 6951065..6951121 | 17..73 | 100 | | Minus |
BS13242.pep Sequence
Translation from 16 to 795
> BS13242.pep
MQCTRAVARLAGGLARTAWATQHTYKHRPAILGLLEQPCRLCSSTGVVDN
TNKTKPGTAEAAEGGILKRVLNKVGFTPNTKARLKVTSHLLYESVADKIN
YVTFFRDFNLPNTFNSWFLVTELHVWLLLMRSMAEGSETGEDGRFLRNCI
VEAMWGDVNTRAKKLGAHNPSRTRQQIETLSEQFQAALIAYDEGIMSDDR
VLACALWRRFFEMNCDDYAQIERLVKYVRQQASMLDSLPRDQFIVKPKVA
WLELDKCKV*
BS13242.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10075-PA | 259 | CG10075-PA | 1..259 | 1..259 | 1361 | 100 | Plus |