Clone Sequence Records
BS13243.complete Sequence
869 bp assembled on 2010-02-09
GenBank Submission: KX805281
> BS13243.complete
GAAGTTATCAGTCGACATGCATTTCTTCATTGTGCCGTGCCTCCTAGGAC
TTGCAGCCGGCATTCCTCAAGGATACAACTACCAAGCCCAGCAACAGCTT
CAATCGTCGGCGCAAGCTGGTCAACTCCATCTGCCTTCTATTCCGCAGTT
TGCCACCCTTGCGGAGCAGACGATCCTTCAGCAGGCACTCCAGGCTCCAA
AGTTGCAGCAGGTCCTGACCGGAGGAGAAGGGCTCGCATCTTACTCAAAT
CAAAACCAGGCCTCCGCTTACCAACAGCAGGCGACGCAGTTCGGCCCAAA
TTCGGCGTACAATGCGCTGCCCCAGGCACATCAGCCTCAGCAGCAGCACC
TCGTCTCCAAGGACATCTACGTCCATGTGCCACCAGCAGAAGAGCCCGAG
GACCGCTACCCTCAGCCCGTCCTTCCGCCCGCGCCTCCGCGCAAGCATTA
TCGCATAGTTTTCATCAAGGCACCGACGACCAGTGTCTCGAAGGCGGCGT
TGCGCATCAAACAGGCTCCTGTGGAGGAGAAGACCATCATCTATGTGCTG
ACCAAGAAGCCGGACCCACTAGATCTCCAGACTGCCATCGAGGAAATCGC
GCCGAAGCAGCCCAGCAAGCCAGAGGTATTTTTCATCAAATACAAGACCC
AGGAGGAAGCTGCGCATGCGCAACGTACCATTCAAGCTCAATATGACCAG
CTTGGCGGAACATCACAGGTTTCTGACGAGGGAGTTGCACCCGTTACATC
CGTGATTGGCGTACTGGACAACCAGCGCAACAACGGAATTTCATCCGGAC
AGTTTTCTGGCTCCTTGCCAAACAGCTACTTGCCAACTAATCTGCGTGCT
TAGAAGCTTTCTAGACCAT
BS13243.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:29:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlG-RC | 837 | CG14643-PC | 1..837 | 17..853 | 4185 | 100 | Plus |
| TwdlG-RB | 837 | CG14643-PB | 1..837 | 17..853 | 4185 | 100 | Plus |
| TwdlG-RA | 837 | CG14643-PA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlG-RC | 2165 | CG14643-RC | 1201..2037 | 17..853 | 4185 | 100 | Plus |
| TwdlG-RB | 1013 | CG14643-RB | 49..885 | 17..853 | 4185 | 100 | Plus |
| TwdlG-RA | 1620 | CG14643-RA | 656..1492 | 17..853 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:29:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4249191..4249845 | 686..32 | 3275 | 100 | Minus |
| 3R | 32079331 | 3R | 4248851..4249019 | 853..685 | 845 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:29:49 has no hits.
BS13243.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:42 Download gff for
BS13243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlG-RA | 656..1492 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:25 Download gff for
BS13243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlG-RA | 656..1492 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:55 Download gff for
BS13243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlG-RA | 656..1492 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:15 Download gff for
BS13243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlG-RA | 656..1492 | 17..853 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:15 Download gff for
BS13243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4248851..4249017 | 687..853 | 100 | <- | Minus |
| 3R | 4249191..4249845 | 32..686 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:25 Download gff for
BS13243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 74573..74739 | 687..853 | 100 | <- | Minus |
| arm_3R | 74913..75567 | 32..686 | 100 | <- | Minus |
BS13243.3prime Sequence
651 bp (597 high quality bases) assembled on 2006-10-13
> BS13243.3prime
ATGGTCTAGAAAGCTTCTAAGCACGCAGATTAGTTGGCAAGTAGCTGTTT
GGCAAGGAGCCAGAAAACTGTCCGGATGAAATTCCGTTGTTGCGCTGGTT
GTCCAGTACGCCAATCACGGATGTAACGGGTGCAACTCCCTCGTCAGAAA
CCTGTGATGTTCCGCCAAGCTGGTCATATTGAGCTTGAATGGTACGTTGC
GCATGCGCAGCTTCCTCCTGGGTCTTGTATTTGATGAAAAATACCTCTGG
CTTGCTGGGCTGCTTCGGCGCGATTTCCTCGATGGCAGTCTGGAGATCTA
GTGGGTCCGGCTTCTTGGTCAGCACATAGATGATGGTCTTCTCCTCCACA
GGAGCCTGTTTGATGCGCAACGCCGCCTTCGAGACACTGGTCGTCGGTGC
CTTGATGAAAACTATGCGATAATGCTTGCGCGGAGGCGCGGGCGGAAGGA
CGGGCTGAGGGTAGCGGTCCTCGGGCTCTTCTGCTGGTGGCACATGGACG
TAGATGTCCTTGGAGACGAGGTGCTGCTGCTGAGGCTGATGTGCCTGGGG
CAGCGCATTGTACGCCGAATTTGGGCCGAACTGCGTCGCCTGCTGTTGGT
AAGCGGAGGCCTGGTTTTGATTTGAGTAAGATGCGAGCCCTTCTCCTCCG
G
BS13243.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14643-PA | 837 | CG14643-RA | 203..837 | 651..17 | 3175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:17:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlG-RC | 2165 | CG14643-RC | 1403..2037 | 651..17 | 3175 | 100 | Minus |
| TwdlG-RB | 1013 | CG14643-RB | 251..885 | 651..17 | 3175 | 100 | Minus |
| TwdlG-RA | 1620 | CG14643-RA | 858..1492 | 651..17 | 3175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:17:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4249191..4249658 | 184..651 | 2340 | 100 | Plus |
| 3R | 32079331 | 3R | 4248851..4249019 | 17..185 | 845 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:17:18 has no hits.
BS13243.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:51 Download gff for
BS13243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14643-PA | 203..837 | 17..651 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:07:20 Download gff for
BS13243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlG-RA | 858..1492 | 17..651 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:10:23 Download gff for
BS13243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlG-RA | 858..1492 | 17..651 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:10:23 Download gff for
BS13243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4248851..4249017 | 17..183 | 100 | <- | Plus |
| 3R | 4249191..4249658 | 184..651 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:07:20 Download gff for
BS13243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 74573..74739 | 17..183 | 100 | <- | Plus |
| arm_3R | 74913..75380 | 184..651 | 100 | | Plus |
BS13243.5prime Sequence
638 bp (577 high quality bases) assembled on 2006-10-13
> BS13243.5prime
GAAGTTATCACTCGACATGCATTTCTTCATTGTGCCGTGCCTCCTAGGAC
TTGCAGCCGGCATTCCTCAAGGATACAACTACCAAGCCCAGCAACAGCTT
CAATCGTCGGCGCAAGCTGGTCAACTCCATCTGCCTTCTATTCCGCAGTT
TGCCACCCTTGCGGAGCAGACGATCCTTCAGCAGGCACTCCAGGCTCCAA
AGTTGCAGCAGGTCCTGACCGGAGGAGAAGGGCTCGCATCTTACTCAAAT
CAAAACCAGGCCTCCGCTTACCAACAGCAGGCGACGCAGTTCGGCCCAAA
TTCGGCGTACAATGCGCTGCCCCAGGCACATCAGCCTCAGCAGCAGCACC
TCGTCTCCAAGGACATCTACGTCCATGTGCCACCAGCAGAAGAGCCCGAG
GACCGCTACCCTCAGCCCGTCCTTCCGCCCGCGCCTCCGCGCAAGCATTA
TCGCATAGTTTTCATCAAGGCACCGACGACCAGTGTCTCGAAGGCGGCGT
TGCGCATCAAACAGGCTCCTGTGGAGGAGAAGACCATCATCTATGTGCTG
ACCAAGAAGCCGGACCCACTAGATCTCCAGACTGCCATCGAGGAAATCGC
GCCGAAACAGCCCAGCAAGCCAGAGGTATTTTTCATCA
BS13243.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14643-PA | 837 | CG14643-RA | 1..622 | 17..638 | 3085 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:49:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlG-RC | 2165 | CG14643-RC | 1201..1822 | 17..638 | 3095 | 99.8 | Plus |
| TwdlG-RB | 1013 | CG14643-RB | 49..670 | 17..638 | 3095 | 99.8 | Plus |
| TwdlG-RA | 1620 | CG14643-RA | 656..1277 | 17..638 | 3095 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4249239..4249845 | 638..32 | 3020 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:49:55 has no hits.
BS13243.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:52 Download gff for
BS13243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14643-PA | 1..621 | 17..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:49:20 Download gff for
BS13243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlG-RA | 646..1276 | 8..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:30:27 Download gff for
BS13243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlG-RA | 646..1276 | 8..637 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:30:27 Download gff for
BS13243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4249240..4249845 | 32..637 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:49:20 Download gff for
BS13243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 74962..75567 | 32..637 | 99 | <- | Minus |
BS13243.pep Sequence
Translation from 16 to 852
> BS13243.pep
MHFFIVPCLLGLAAGIPQGYNYQAQQQLQSSAQAGQLHLPSIPQFATLAE
QTILQQALQAPKLQQVLTGGEGLASYSNQNQASAYQQQATQFGPNSAYNA
LPQAHQPQQQHLVSKDIYVHVPPAEEPEDRYPQPVLPPAPPRKHYRIVFI
KAPTTSVSKAALRIKQAPVEEKTIIYVLTKKPDPLDLQTAIEEIAPKQPS
KPEVFFIKYKTQEEAAHAQRTIQAQYDQLGGTSQVSDEGVAPVTSVIGVL
DNQRNNGISSGQFSGSLPNSYLPTNLRA*
BS13243.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlG-PC | 278 | CG14643-PC | 1..278 | 1..278 | 1428 | 100 | Plus |
| TwdlG-PB | 278 | CG14643-PB | 1..278 | 1..278 | 1428 | 100 | Plus |
| TwdlG-PA | 278 | CG14643-PA | 1..278 | 1..278 | 1428 | 100 | Plus |
| TwdlF-PA | 354 | CG14639-PA | 4..275 | 3..246 | 424 | 41.2 | Plus |
| TwdlV-PA | 251 | CG14640-PA | 1..250 | 1..275 | 387 | 38.8 | Plus |
