Clone Sequence Records
BS13245.3prime Sequence
618 bp (556 high quality bases) assembled on 2006-10-13
> BS13245.3prime
ATGGTCTAGAAAGCTTTCATTTTCTTCGCACGGTGGTCCAGCCGTCTTCC
GGTTCCACAAACTCCTCAGCCTGCTGCTTTCGTGCCTGCGATCGCGTCAT
CCGACCACTGCCGCTGGGAGTTTCCTCGTCGCCCTGGCCCATTTCATTAT
CGTCCTCCTCGTCGCTGTCGTCCATGTCCTCATCGGATGAGGAGTCCCCA
TCGATGGGTGTGTAGGTGATCTTAACATCCGGACGCAGCCACTCCTTGCC
AGCAGGAAGTTTACTCAATTCAGCCTCTATTTGCGGAAACTGGTTCTGCT
GGGCCATCAATTTGTAGCGCAGCAGATTCCGGCAGATCTCCGGAATGGAG
TCGTCGTCGCAGAGGGTGTTAAACTCCTGGTCCATCAGCTCCTCCAGGAC
CTCCACCAGTTCGCCTTGCGTGATATTTTCGTTGGACACGCAGTACTGGT
AGGTGTAGTCCATGATTTCTATGGCCACCTGTTGGCCATTGCGTCCGCCC
ATGCCATGCTCCACCGCCAGCCGGAGATCCTGCCAGTGATTGAAGATCTT
CTCTACAATCACTCTAAAATTCTTTTGGAATTTCATTTGTTGTGCGGCTG
CCATGTCGACTGATAACT
BS13245.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14543-PA | 588 | CG14543-RA | 23..588 | 582..17 | 2830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:57:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14543-RA | 657 | CG14543-RA | 28..616 | 604..16 | 2900 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26056845..26057309 | 480..16 | 2325 | 100 | Minus |
| 3R | 32079331 | 3R | 26056657..26056784 | 604..477 | 595 | 97.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:57:23 has no hits.
BS13245.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:53 Download gff for
BS13245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-PA | 1..588 | 17..604 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:39 Download gff for
BS13245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 26..620 | 9..608 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:04 Download gff for
BS13245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 26..620 | 9..608 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:04 Download gff for
BS13245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26056655..26056782 | 479..608 | 96 | -> | Minus |
| 3R | 26056847..26057313 | 9..478 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:39 Download gff for
BS13245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21882377..21882504 | 479..608 | 96 | -> | Minus |
| arm_3R | 21882569..21883035 | 9..478 | 99 | | Minus |
BS13245.5prime Sequence
618 bp (571 high quality bases) assembled on 2006-10-13
> BS13245.5prime
GAAGTTATCAGTCGACATGGCAGCCGCACAACAAACTGAATTCCAAAAGA
ATTTTAGAGTGATTGTAGAGAAGATCTTCAATCACTGGCAGGATCTCCGG
CTGGCGGTGGAGCATGGCATGGGCGGACGCAATGGCCAACAGGTGGCCAT
AGAAATCATGGACTACACCTACCAGTACTGCGTGTCCAACGAAAATATCA
CGCAAGGCGAACTGGTGGAGGTCCTGGAGGAGCTGATGGACCAGGAGTTT
AACACCCTCTGCGACGACGACTCCATTCCGGAGATCTGCCGGAATCTGCT
GCGCTACAAATTGATGGCCCAGCAGAACCAGTTTCCGCAAATAGAGGCTG
AATTGAGTAAACTTCCTGCTGGCAAGGAGTGGCTGCGTCCGGATGTTAAG
ATCACCTACACACCCATCGATGGGGACTCCTCATCCGATGAGGACATGGA
CGACAGCGACGAGGAGGACGATAATGAAATGGGCCAGGGCGACGAGGAAA
CTCCCAGCGGCAGTGGTCGGATGACGCGATCGCAGGCACGAAAGCAGCAG
GCTGAGGAGTTTGTGGAACCGGAAAACGGCTGGACCACCGTGCGAAGAAA
ATGAAAGCTTTCTAGACC
BS13245.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14543-PA | 588 | CG14543-RA | 1..588 | 17..604 | 2915 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:25:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14543-RA | 657 | CG14543-RA | 28..616 | 17..605 | 2930 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26056845..26057309 | 141..605 | 2310 | 99.8 | Plus |
| 3R | 32079331 | 3R | 26056657..26056784 | 17..144 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:25:23 has no hits.
BS13245.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:53 Download gff for
BS13245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-PA | 1..588 | 17..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:51 Download gff for
BS13245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 26..620 | 13..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:39 Download gff for
BS13245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 26..620 | 13..612 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:39 Download gff for
BS13245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26056655..26056782 | 13..142 | 98 | -> | Plus |
| 3R | 26056847..26057313 | 143..612 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:51 Download gff for
BS13245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21882377..21882504 | 13..142 | 98 | -> | Plus |
| arm_3R | 21882569..21883035 | 143..612 | 99 | | Plus |
BS13245.complete Sequence
620 bp assembled on 2006-11-01
GenBank Submission: FJ637400
> BS13245.complete
GAAGTTATCAGTCGACATGGCAGCCGCACAACAAACTGAATTCCAAAAGA
ATTTTAGAGTGATTGTAGAGAAGATCTTCAATCACTGGCAGGATCTCCGG
CTGGCGGTGGAGCATGGCATGGGCGGACGCAATGGCCAACAGGTGGCCAT
AGAAATCATGGACTACACCTACCAGTACTGCGTGTCCAACGAAAATATCA
CGCAAGGCGAACTGGTGGAGGTCCTGGAGGAGCTGATGGACCAGGAGTTT
AACACCCTCTGCGACGACGACTCCATTCCGGAGATCTGCCGGAATCTGCT
GCGCTACAAATTGATGGCCCAGCAGAACCAGTTTCCGCAAATAGAGGCTG
AATTGAGTAAACTTCCTGCTGGCAAGGAGTGGCTGCGTCCGGATGTTAAG
ATCACCTACACACCCATCGATGGGGACTCCTCATCCGATGAGGACATGGA
CGACAGCGACGAGGAGGACGATAATGAAATGGGCCAGGGCGACGAGGAAA
CTCCCAGCGGCAGTGGTCGGATGACGCGATCGCAGGCACGAAAGCAGCAG
GCTGAGGAGTTTGTGGAACCGGAAGACGGCTGGACCACCGTGCGAAGAAA
ATGAAAGCTTTCTAGACCAT
BS13245.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:02:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14543-RA | 588 | CG14543-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14543-RA | 657 | CG14543-RA | 28..616 | 17..605 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26056845..26057309 | 141..605 | 2325 | 100 | Plus |
| 3R | 32079331 | 3R | 26056657..26056784 | 17..144 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:02:39 has no hits.
BS13245.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:57 Download gff for
BS13245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:44 Download gff for
BS13245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 29..623 | 13..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:56 Download gff for
BS13245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 28..608 | 17..597 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:57 Download gff for
BS13245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 29..623 | 13..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:38 Download gff for
BS13245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 28..608 | 17..597 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:38 Download gff for
BS13245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26056847..26057301 | 143..597 | 100 | | Plus |
| 3R | 26056657..26056782 | 17..142 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:56 Download gff for
BS13245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21882379..21882504 | 17..142 | 100 | -> | Plus |
| arm_3R | 21882569..21883023 | 143..597 | 100 | | Plus |
BS13245.pep Sequence
Translation from 16 to 603
> BS13245.pep
MAAAQQTEFQKNFRVIVEKIFNHWQDLRLAVEHGMGGRNGQQVAIEIMDY
TYQYCVSNENITQGELVEVLEELMDQEFNTLCDDDSIPEICRNLLRYKLM
AQQNQFPQIEAELSKLPAGKEWLRPDVKITYTPIDGDSSSDEDMDDSDEE
DDNEMGQGDEETPSGSGRMTRSQARKQQAEEFVEPEDGWTTVRRK*
BS13245.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14543-PA | 195 | CG14543-PA | 1..195 | 1..195 | 1028 | 100 | Plus |
