Clone Sequence Records
BS13246.5prime Sequence
522 bp (476 high quality bases) assembled on 2006-10-13
> BS13246.5prime
GAAGTTATCACTCGACATGTTTTATAAACTATGTGCTTTTATGTGTTTCT
TGATAGTTGGAGGGCATGTCACCACCACAATGGCCATTGACAGCATATCG
GGTTATATACGAAAATGCTGTATAAATGGACTTCGACATGCTCGTACGAC
CGCCTCTTGCAAAAAAATCGACATAGCCCCAACAATAATCCCGCAGCTCT
GGCTTGGACTTTGTCATTCTACACTTGAAGTCTGCTGTTCTCGAGAACTG
GACCATCAAGATTGCGAGCTAGGTCGACTGGCTGCTTTAGACGGTACTCG
CTGTGACGGAGAAGGAAATGTAACATCTAGCTCCTATGCGACATGTTGTC
GTTCTTGTCAAATCGGATTAGCAGTTAAAGCGAGTAAAGCCAATTGCAAA
GATCCATTATTTTCATTTATTTTCTTAATTGAATCATACCGAGCGTGCTG
TTACGGATCTGCTGACTTTAAAGACCCATCCCGGTATCGACGAAATCGAT
AAGGCTATTTCTATTACTGATG
BS13246.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:46:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31999-PA | 2754 | CG31999-RA | 1..505 | 17..522 | 2415 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:54:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31999-RC | 3639 | CG31999-RC | 790..1294 | 17..522 | 2460 | 99.2 | Plus |
| CG31999-RA | 2972 | CG31999-RA | 123..627 | 17..522 | 2460 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:54:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 224008..224440 | 522..89 | 2090 | 99.3 | Minus |
| 4 | 1348131 | 4 | 225765..225834 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:54:42 has no hits.
BS13246.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:54 Download gff for
BS13246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31999-PA | 1..505 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:16 Download gff for
BS13246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31999-RA | 116..627 | 10..522 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:41 Download gff for
BS13246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31999-RA | 116..627 | 10..522 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:41 Download gff for
BS13246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 224008..224439 | 90..522 | 99 | <- | Minus |
| 4 | 225762..225841 | 10..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:16 Download gff for
BS13246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 244634..245065 | 90..522 | 99 | <- | Minus |
| arm_4 | 246388..246467 | 10..89 | 95 | | Minus |
BS13246.complete Sequence
2786 bp assembled on 2010-07-15
GenBank Submission: KX802909
> BS13246.complete
GAAGTTATCAGTCGACATGTTTTATAAACTATGTGCTTTTATGTGTTTCT
TGATAGTTGGAGGGCATGTCACCACCACAATGGCCAGTGACAGCATATCG
GGTTATATACGAAAATGCTGTATAAATGGACTTCGACATGCTCGTACGAC
CGCCTCTTGCAAAAAAATCGACATAGCCCCAACAATAATCCCGCAGCTCT
GGCTTGGACTTTGTCATTCTACACTTGAAGTCTGCTGTTCTCGAGAACTG
GACCATCAAGATTGCGAGCTAGGTCGACTGGCTGCTTTAGACGGTACTCG
CTGTGACGGAGAAGGAAATGTAACATCTAGCTCCTATGCGACATGTTGTC
GTTCTTGTCAAATCGGATTAGCAGTTAAAGCGAGTAAAGCCAATTGCAAA
GATCCATTATTTTCATTTATTTTCTTAATTGAATCATACCGAGCGTGCTG
TTACGGATCTGCTGACTTTAAAGACCAGCCCGGTATCGACGAAATCGATA
AGGCTAATTCTATTACTGATGAAGGTGAATTGCCGTTTGTTTCTGAAGAG
GATATGAATGTAACTATTGTTCTTACCGGCGATGATGACATATGTGGAAA
AATTGAAAACCTTTGCGCTCACATATGCGAAAACACTTTCGACGCATACC
AATGTAAGTGCCACCCCGGGTTTATGTTAGATAATAACAACGTAACATGC
TCTCCGATGAAAACCCAAATATGTCCCAGCGGTTACAATTTAGATAAACT
GGATAACAAATGCATTGACATTGATGAATGCCGGGAAGATCTTCATGACT
GCAAATCATCCCAATATTGCCATAATACGAATGGCGGATACCACTGCTTA
AATGTGAAAGAAAAAGAGTGTCCACCAGGATTTCATTATGACCATGATTA
CGATGCATGTAAAGATGATTACAAATGCAAAGATCGTAAATGCGTTAAAA
TTCAATCTTGTGATAAAGGATTCAGCTTGCATAACGGTACCTGTTCCGAT
ATTGACGAGTGCTCACATAAATCATTAAACAACTGTCATGTCAATAGTAA
TCAGGAATGTGTTAACACAGTGGGAAGTTATTCCTGCAATTGCCTGCCTG
GATTTAATTTGGATGCTACACTAAATAAGTGTGTTGATATAAATGAATGT
TCAATAAATAATCACAACTGCCTTCCAACTCAGAGATGTGATAACACGAT
CGGATCATATATATGCACGCGCCTACAAAGCTGCGGAACAGGCTATACCT
TAAATGCAGAAACGGGGAATTGTGACGATGATGATGAATGCACCCTTAGT
ACACATAACTGTCCGTCAAACTATGATTGTCACAACACGAGGGGATCATT
CCGATGTTATAGAAAAATCTCAACAATGTTAACAACAAGAACGACATCAA
CTACAGTTCCGCCTTTATCTTTGGAAAACGCACGAAGGAGTTTTACTAGC
CGATACCCATACCCATTAGCCGTACATCCGGAATACTCACAAAACAACGA
TTCCATTTCTACGAATCGGCGTGTAGACTGCTCCCCTGGATTTTATAGGA
ATACTCTTGGTGCCTGCATAGATACAAATGAATGCATGGAACAAAATCCG
TGCGGAAACCATGAACGATGCATTAACACAAATGGCCATTTCCGCTGCGA
AAGTCTGCTCCAGTGCTCGCCCGGCTACAAATCAACAGTGGACGGTAAAT
CATGCATAGACATTGATGAGTGCGATACTGGTGAACACAATTGTGGCGAA
AGACAGATTTGCCGTAATCGAAACGGTGGCTTTGTGTGCTCCTGCCCGAT
AGGTCATGAGCTCAAACGATCCATTGGTGGTGCTAGTACATGTGTTGACA
CGAACGAATGCGCTCTAGAACAACGTGTATGTCCATTGAACGCCCAGTGC
TTTAACACTATTGGAGCTTACTACTGCGAATGCAAAGCTGGCTTTCAAAA
GAAATCTGATGGTAATAATAGCACACAATGTTTTGATATCGATGAGTGTC
AAGTGATTCCGGGACTTTGTCAACAAAAATGTCTCAACTTTTGGGGAGGA
TATCGATGCACTTGTAACTCTGGATACCAATTGGGACCGGACAACCGGAC
ATGCAATGATATAAATGAATGCGAAGTACATAAGGATTACAAACTATGTA
TGGGATTATGCATAAACACTCCTGGTTCGTATCAATGTTCCTGTCCACGT
GGATATATATTGGCTGCAGATATGAATACGTGTCGTGATGTCGATGAATG
CGCAACAGATTCCATTAATCAAGTTTGTACTGGCCGGAATGACATTTGCA
CCAATATCAGAGGAAGCTACAAATGTACTACCGTTAATTGTCCACTTGGA
TACAGCATTGACCCAGAACAAAAAAACCGGTGCCGCCAGAATCTTAACTT
TTGTGAAGGAGAAGAATGTTACACCCAACCGTCAGCTTTCACATATAATT
TTATAACATTCGTTTCTAAGCTAATGATACCTCCAGATGGTCGTACCATA
TTTACATTGAGAGGTCCACTTTGGTATGATAATATCGAATTTGATCTTAA
AATTGTTCGCATACAAGCAACCACCAATATTCAAAAGGCAACCGATGGGA
GTTTTGACACTTTACAAAACAACAACCAAGTTAACGTGATATTAAAGAAA
TCACTGGAGGGACCCCAGGACATCGAGTTGGAGTTAAGTATGACAGTGTA
CACAAACGGAATGCCTCGTGGAAAAAGTGTAGCAAAATTATTTCTGTTTG
TTTCTCAACATACATTTTAAAAGCTTTCTAGACCAT
BS13246.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:33:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31999-RC | 2754 | CG31999-PC | 1..2754 | 17..2770 | 13770 | 100 | Plus |
| CG31999-RA | 2754 | CG31999-PA | 1..2754 | 17..2770 | 13770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31999-RC | 3639 | CG31999-RC | 790..3545 | 17..2772 | 13780 | 100 | Plus |
| CG31999-RA | 2972 | CG31999-RA | 123..2878 | 17..2772 | 13780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:33:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 223945..224440 | 584..89 | 2480 | 100 | Minus |
| 4 | 1348131 | 4 | 218446..218894 | 2154..1706 | 2245 | 100 | Minus |
| 4 | 1348131 | 4 | 223557..223887 | 914..584 | 1655 | 100 | Minus |
| 4 | 1348131 | 4 | 220144..220438 | 1571..1277 | 1475 | 100 | Minus |
| 4 | 1348131 | 4 | 215330..215560 | 2607..2377 | 1155 | 100 | Minus |
| 4 | 1348131 | 4 | 222791..223014 | 1136..913 | 1120 | 100 | Minus |
| 4 | 1348131 | 4 | 215103..215267 | 2772..2608 | 825 | 100 | Minus |
| 4 | 1348131 | 4 | 219891..220030 | 1709..1570 | 700 | 100 | Minus |
| 4 | 1348131 | 4 | 218248..218381 | 2287..2154 | 670 | 100 | Minus |
| 4 | 1348131 | 4 | 217406..217495 | 2376..2287 | 450 | 100 | Minus |
| 4 | 1348131 | 4 | 222654..222737 | 1219..1136 | 420 | 100 | Minus |
| 4 | 1348131 | 4 | 225762..225834 | 89..17 | 365 | 100 | Minus |
| 4 | 1348131 | 4 | 222541..222599 | 1277..1219 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:33:23 has no hits.
BS13246.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 13:47:15 Download gff for
BS13246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31999-RA | 128..2872 | 24..2768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:57 Download gff for
BS13246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31999-RA | 130..2874 | 24..2768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:52:13 Download gff for
BS13246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31999-RA | 130..2874 | 24..2768 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:52:13 Download gff for
BS13246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 223557..223886 | 585..914 | 100 | <- | Minus |
| 4 | 215107..215267 | 2608..2768 | 100 | <- | Minus |
| 4 | 215330..215560 | 2377..2607 | 100 | <- | Minus |
| 4 | 217406..217494 | 2288..2376 | 100 | <- | Minus |
| 4 | 218248..218380 | 2155..2287 | 100 | <- | Minus |
| 4 | 218446..218890 | 1710..2154 | 100 | <- | Minus |
| 4 | 219891..220028 | 1572..1709 | 100 | <- | Minus |
| 4 | 220144..220437 | 1278..1571 | 100 | <- | Minus |
| 4 | 222541..222598 | 1220..1277 | 100 | <- | Minus |
| 4 | 222654..222736 | 1137..1219 | 100 | <- | Minus |
| 4 | 222791..223012 | 915..1136 | 100 | <- | Minus |
| 4 | 223945..224439 | 90..584 | 100 | <- | Minus |
| 4 | 225762..225827 | 24..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:57 Download gff for
BS13246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 235733..235893 | 2608..2768 | 100 | <- | Minus |
| arm_4 | 235956..236186 | 2377..2607 | 100 | <- | Minus |
| arm_4 | 238032..238120 | 2288..2376 | 100 | <- | Minus |
| arm_4 | 238874..239006 | 2155..2287 | 100 | <- | Minus |
| arm_4 | 239072..239516 | 1710..2154 | 100 | <- | Minus |
| arm_4 | 240517..240654 | 1572..1709 | 100 | <- | Minus |
| arm_4 | 240770..241063 | 1278..1571 | 100 | <- | Minus |
| arm_4 | 243167..243224 | 1220..1277 | 100 | <- | Minus |
| arm_4 | 243280..243362 | 1137..1219 | 100 | <- | Minus |
| arm_4 | 243417..243638 | 915..1136 | 100 | <- | Minus |
| arm_4 | 244183..244512 | 585..914 | 100 | <- | Minus |
| arm_4 | 244571..245065 | 90..584 | 100 | <- | Minus |
| arm_4 | 246388..246453 | 24..89 | 100 | | Minus |
BS13246.pep Sequence
Translation from 16 to 2769
> BS13246.pep
MFYKLCAFMCFLIVGGHVTTTMASDSISGYIRKCCINGLRHARTTASCKK
IDIAPTIIPQLWLGLCHSTLEVCCSRELDHQDCELGRLAALDGTRCDGEG
NVTSSSYATCCRSCQIGLAVKASKANCKDPLFSFIFLIESYRACCYGSAD
FKDQPGIDEIDKANSITDEGELPFVSEEDMNVTIVLTGDDDICGKIENLC
AHICENTFDAYQCKCHPGFMLDNNNVTCSPMKTQICPSGYNLDKLDNKCI
DIDECREDLHDCKSSQYCHNTNGGYHCLNVKEKECPPGFHYDHDYDACKD
DYKCKDRKCVKIQSCDKGFSLHNGTCSDIDECSHKSLNNCHVNSNQECVN
TVGSYSCNCLPGFNLDATLNKCVDINECSINNHNCLPTQRCDNTIGSYIC
TRLQSCGTGYTLNAETGNCDDDDECTLSTHNCPSNYDCHNTRGSFRCYRK
ISTMLTTRTTSTTVPPLSLENARRSFTSRYPYPLAVHPEYSQNNDSISTN
RRVDCSPGFYRNTLGACIDTNECMEQNPCGNHERCINTNGHFRCESLLQC
SPGYKSTVDGKSCIDIDECDTGEHNCGERQICRNRNGGFVCSCPIGHELK
RSIGGASTCVDTNECALEQRVCPLNAQCFNTIGAYYCECKAGFQKKSDGN
NSTQCFDIDECQVIPGLCQQKCLNFWGGYRCTCNSGYQLGPDNRTCNDIN
ECEVHKDYKLCMGLCINTPGSYQCSCPRGYILAADMNTCRDVDECATDSI
NQVCTGRNDICTNIRGSYKCTTVNCPLGYSIDPEQKNRCRQNLNFCEGEE
CYTQPSAFTYNFITFVSKLMIPPDGRTIFTLRGPLWYDNIEFDLKIVRIQ
ATTNIQKATDGSFDTLQNNNQVNVILKKSLEGPQDIELELSMTVYTNGMP
RGKSVAKLFLFVSQHTF*
BS13246.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31999-PC | 917 | CG31999-PC | 1..917 | 1..917 | 5163 | 100 | Plus |
| CG31999-PA | 917 | CG31999-PA | 1..917 | 1..917 | 5163 | 100 | Plus |
| frac-PC | 1618 | CG7526-PC | 397..1014 | 83..777 | 647 | 28.7 | Plus |
| frac-PE | 1618 | CG7526-PE | 397..1014 | 83..777 | 647 | 28.7 | Plus |
| frac-PD | 1618 | CG7526-PD | 397..1014 | 83..777 | 647 | 28.7 | Plus |
| frac-PC | 1618 | CG7526-PC | 195..1012 | 152..815 | 644 | 26.1 | Plus |
| frac-PE | 1618 | CG7526-PE | 195..1012 | 152..815 | 644 | 26.1 | Plus |
