Clone BS13248 Report

Search the DGRC for BS13248

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG40006-RA
Protein status:BS13248.pep: full length peptide match
Sequenced Size:2102

Clone Sequence Records

BS13248.5prime Sequence

661 bp (546 high quality bases) assembled on 2006-10-13

> BS13248.5prime
GAAGTTATCAGTCGACATGAAGGAGTTTAGCAAAATGTTTGCGCGACGAT
ATAGTTCAGTATCAAGAGACGTAGAGGCCAGCAATCAGCGGCAGTCAGCA
GTGACCCCTGGATCTGGGTTGAGCACAGACGCAGATCCTGCGGTGTCTTG
TGCCGCTCAGGTAGCACTGCAACGAATCCAGCGCCGCAAAAGTCTCAAGG
CAAATCGTTCAATGAATCCGATAGACATACTAAGCAGCTTTTTCAACGAG
CCAATCCAAGGCAAACGGAATCGAGTTCCTACCCGTTTATTTATACTTCT
AGTCATCGGATTTTTGGCTATTATAACATCTACACTGATTAAAGTTTTGG
AACCATACGATTTGATATTTAAATGGAAATTAATCATGACAGAGGGAGGT
GAGATCTTTAATCTGTGGGCCCAGCCTCCAGTCGATCTGTATATTAAGAT
ATATTTGTTCAACATAACCAATGCCAACGCGTTTTTAGCGGGTCGCGAGC
AGCTTAGAGTCGAACAAGTTGGTCCCTATGTTTATAAGGAGATAATGACA
CATGAGAATGTAACGTTCAATTCGAATAACACCATGTCCCGCGCTCCCAG
TCATCCCCTTACTCTGGGAGGAGGAAATGTCTGGGAATTGTCGTGAGGAC
GATGAGGTTGT

BS13248.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG40006-PA 2070 CG40006-RA 1..644 17..661 3085 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG40006-RA 2590 CG40006-RA 226..869 17..661 3140 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22755855..22756124 286..17 1350 100 Minus
2L 23513712 2L 22718566..22718728 538..376 815 100 Minus
2L 23513712 2L 22718390..22718512 661..538 510 96 Minus
2L 23513712 2L 22718884..22718975 376..285 460 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:59:34 has no hits.

BS13248.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:54 Download gff for BS13248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40006-PA 1..644 17..661 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:01:16 Download gff for BS13248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40006-RA 218..869 9..661 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:44:33 Download gff for BS13248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40006-RA 218..869 9..661 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:44:33 Download gff for BS13248.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22718390..22718512 538..661 95 <- Minus
2L 22718567..22718727 377..537 100 <- Minus
2L 22718884..22718975 285..376 100 <- Minus
2L 22755857..22756132 9..284 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:01:16 Download gff for BS13248.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22611122..22611244 538..661 95 <- Minus
arm_2L 22611299..22611459 377..537 100 <- Minus
arm_2L 22611616..22611707 285..376 100 <- Minus
arm_2L 22648589..22648864 9..284 98   Minus

BS13248.complete Sequence

2102 bp assembled on 2009-08-24

GenBank Submission: KX804259

> BS13248.complete
GAAGTTATCAGTCGACATGAAGGAGTTTAGCAAAATGTTTGCGCGACGAT
ATAGTTCAGTATCAAGAGACGTAGAGGCCAGCAATCAGCGGCAGTCAGCA
GTGACCCCTGGATCTGGGTTGAGCACAGACGCAGATCCTGCGGTGTCTTG
TGCCGCTCAGGTAGCACTGCAACGAATCCAGCGCCGCAAAAGTCTCAAGG
CAAATCGTTCAATGAATCCGATAGACATACTAAGCAGCTTTTTCAACGAG
CCAATCCAAGGCAAACGGAATCGAGTTCCTACCCGTTTATTTATACTTCT
AGTCATCGGATTTTTGGCTATTATAACATCTACACTGATTAAAGTTTTGG
AACCATACGATTTGATATTTAAATGGAAATTAATCATGACAGAGGGAGGT
GAGATCTTTAATCTGTGGGCCCAGCCTCCAGTCGATCTGTATATTAAGAT
ATATTTGTTCAACATAACCAATGCCAACGCGTTTTTAGCGGGTCGCGAGC
AGCTTAGAGTCGAACAAGTTGGTCCCTATGTTTATAAGGAGATAATGACA
CATGAGAATGTAACGTTCAATTCGAATAACACCATGTCCAGCACTCCCAG
TCATCCCTTAGTCTGGCAGGAGGAAATGTCTGGGAATTGTCGTGAGGACG
ATGAGGTTGTAATGCTCAATATTGCCATGCTGGCAATATCACACCTTACT
GCCAACCAGCCGTTCTTAGTTAGAATGGCTCTGAAGACACTACTACTGAG
TACAAAGTCGGAGCCAATAGTTCGCACCACTGCCAAGGAATTCATGTTTG
GCTATCCCTCCGCCCTGGCCACTCTCGGCAACACCTTCCTTCCAAATTGG
ATTTCCTTTGAAAAGGTTGGGCTTATCGATCGCATGTACGACTTCTCAAC
GGATTTCGAGACGTTCTACACAGGCGTGCCCAATCCAGCGCTTTCGGGAT
TATATGCATCGTATCGCGGAGAGACAACGCTGCCACAGTGGGACGGGGAC
CATTGCAGCAACATAGAGTTTGCATCTGATGGTACAAAGTTCAAAAGCTT
CATTCAGCCTAACGAGACCGTTAAGTTCTTCCGAAAAAGCATGTGTAGAC
CGATAAACTTGTACCGGGTGGGAAACGAAAAAACCTATGGCAGCCTTAAA
GGATATAATTATGTATTTGAGGATAACGCCTTTGATAATGGCGCAACTAA
TGAAGCTAACAAATGTTTTTGTAGAAAAGGTGACTGTCAGCCGGTTGGAC
TTATTGATGTTACTGACTGCTATTACGGATTCCCAATCTCCTTAAGTTTT
CCCCACTTCATGAACGGTGACGTGGGGCTCCAACAAAACGTCACCGGCAT
AAGTCCAGATCCGGATAAACACTCATCAACCTTTGTCATTCAACCGGAAT
CCGGCCTGCCGTTGTCACTCTCTGTAAAAGTGCAAATTAACATGCACTTT
AAGGACCTGAGCAATTTTCCAGTAGTATCTGTATTTAATCATCTAACAGT
GCCAATGTTGTGGTTTGAAATCATGATGTCAAAGCTGCCCGACAGCTTGG
ACTCGCGGTTCAACTTTTACCTGAACATTTTGCCGTTAGTTAATCCCTTA
GGCTTTTGGAGTGGCATACTATTGGGAATAAGTCTTTTGGGGTATGCAAT
AACCAAGGCCACGCTTCACATGTCTACCTTTTCTCGACGAGCTGCTAATA
TAACAGATGTTAAATATGTACGAGCAAATTTAATTCAAAACATCGCAGGT
GAAGCAGCGAATCATGCTTACAGTCCGTGCGATATTAAGTTACTAGATGA
TATTTCGGTTGTAAGGCATCCTGTTAATAAGCAAACAGTCCAGGATTCTG
GATTCAGTTCAAAAACAACATACGCCTTGGATATGGAACCTGCTTTATTA
GACACGAGCGAGAGCAGCGACGAGGGGCGAGATTGTGATATTGTTACCAT
ATCCCGTAATTCTACAAGCACCCGCTTTTGCGCAGATGAAAAAAAATGCT
GGCTCGGCGACGATATACGAGTCGAGTGTTTCACCGAGAGTCGAGCTCCT
CAAACGATTTTGAAAAGGGAAGAACAAATACATTAAAAGCTTTCTAGACC
AT

BS13248.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG40006-RA 2070 CG40006-PA 1..2070 17..2086 10350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG40006-RA 2590 CG40006-RA 226..2295 17..2086 10350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22643137..22643700 2086..1523 2820 100 Minus
2L 23513712 2L 22688181..22688610 1111..682 2150 100 Minus
2L 23513712 2L 22755855..22756124 286..17 1350 100 Minus
2L 23513712 2L 22675923..22676092 1397..1228 850 100 Minus
2L 23513712 2L 22718566..22718728 538..376 815 100 Minus
2L 23513712 2L 22718367..22718512 683..538 730 100 Minus
2L 23513712 2L 22643757..22643883 1522..1396 635 100 Minus
2L 23513712 2L 22688004..22688124 1231..1111 605 100 Minus
2L 23513712 2L 22718884..22718975 376..285 460 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:26:58 has no hits.

BS13248.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-22 16:07:05 Download gff for BS13248.complete
Subject Subject Range Query Range Percent Splice Strand
CG40006-RA 226..2293 17..2084 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:56 Download gff for BS13248.complete
Subject Subject Range Query Range Percent Splice Strand
CG40006-RA 226..2293 17..2084 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:50 Download gff for BS13248.complete
Subject Subject Range Query Range Percent Splice Strand
CG40006-RA 226..2293 17..2084 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:50 Download gff for BS13248.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22643757..22643882 1397..1522 100 <- Minus
2L 22675924..22676090 1230..1396 100 <- Minus
2L 22688006..22688123 1112..1229 100 <- Minus
2L 22643139..22643700 1523..2084 100 <- Minus
2L 22688181..22688609 683..1111 100 <- Minus
2L 22718368..22718512 538..682 100 <- Minus
2L 22718567..22718727 377..537 100 <- Minus
2L 22718884..22718975 285..376 100 <- Minus
2L 22755857..22756124 17..284 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:56 Download gff for BS13248.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22536489..22536614 1397..1522 100 <- Minus
arm_2L 22568656..22568822 1230..1396 100 <- Minus
arm_2L 22580738..22580855 1112..1229 100 <- Minus
arm_2L 22535871..22536432 1523..2084 100 <- Minus
arm_2L 22580913..22581341 683..1111 100 <- Minus
arm_2L 22611100..22611244 538..682 100 <- Minus
arm_2L 22611299..22611459 377..537 100 <- Minus
arm_2L 22611616..22611707 285..376 100 <- Minus
arm_2L 22648589..22648856 17..284 100   Minus

BS13248.pep Sequence

Translation from 16 to 2085

> BS13248.pep
MKEFSKMFARRYSSVSRDVEASNQRQSAVTPGSGLSTDADPAVSCAAQVA
LQRIQRRKSLKANRSMNPIDILSSFFNEPIQGKRNRVPTRLFILLVIGFL
AIITSTLIKVLEPYDLIFKWKLIMTEGGEIFNLWAQPPVDLYIKIYLFNI
TNANAFLAGREQLRVEQVGPYVYKEIMTHENVTFNSNNTMSSTPSHPLVW
QEEMSGNCREDDEVVMLNIAMLAISHLTANQPFLVRMALKTLLLSTKSEP
IVRTTAKEFMFGYPSALATLGNTFLPNWISFEKVGLIDRMYDFSTDFETF
YTGVPNPALSGLYASYRGETTLPQWDGDHCSNIEFASDGTKFKSFIQPNE
TVKFFRKSMCRPINLYRVGNEKTYGSLKGYNYVFEDNAFDNGATNEANKC
FCRKGDCQPVGLIDVTDCYYGFPISLSFPHFMNGDVGLQQNVTGISPDPD
KHSSTFVIQPESGLPLSLSVKVQINMHFKDLSNFPVVSVFNHLTVPMLWF
EIMMSKLPDSLDSRFNFYLNILPLVNPLGFWSGILLGISLLGYAITKATL
HMSTFSRRAANITDVKYVRANLIQNIAGEAANHAYSPCDIKLLDDISVVR
HPVNKQTVQDSGFSSKTTYALDMEPALLDTSESSDEGRDCDIVTISRNST
STRFCADEKKCWLGDDIRVECFTESRAPQTILKREEQIH*

BS13248.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG40006-PA 689 CG40006-PA 1..689 1..689 3604 100 Plus
CG10345-PA 552 CG10345-PA 7..488 84..550 593 27.3 Plus
emp-PE 508 CG2727-PE 8..508 85..583 559 28.2 Plus
emp-PD 520 CG2727-PD 30..520 95..583 558 28.6 Plus
emp-PA 520 CG2727-PA 30..520 95..583 558 28.6 Plus