Clone BS13249 Report

Search the DGRC for BS13249

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG1673-RA
Protein status:BS13249.pep: full length peptide match
Sequenced Size:1364

Clone Sequence Records

BS13249.complete Sequence

1364 bp assembled on 2009-12-07

GenBank Submission: KX804682

> BS13249.complete
GAAGTTATCAGTCGACATGACGACCAAAATGGCAATTAACGCAAAGGATA
TTTTCCGCAATCAGCATCGCCTGATCCGCTTCCTCGAGCAGTCGATCCGG
TTGTGCAGCAACCAGTCTCTGAAAGCCGCCCAAGCGGCACAGTTGCAACA
GAAATCGTCGGCGGACTTCGAGATCACCGCCTCGCTGGACGCCCAATACA
CCAGTGCCCCGGAGCCCATTAAGCATGACAAGAATCTGGGTCATCAGTTC
CGTGCCTCACAGATTTCCGTGCGACTGGCCGCACCGGAGCAACTGCAGCC
CAAGCCGGACAACGATGAGGAATTGGGTTTCGGCCGCCTATTCACCGATC
ACATGCTCAAGATCTACTACCACAAGAGTTTGGGCGGATGGCAGCGACCG
GAGATTACGCCGCTGGAGAATCTAGTGATGCATCCCGCCGCCAAGGTCCT
GCACTACGCCGTTGAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCGTCG
ATGGCAAGATCCGCATCTTCCGGCCGGACATGAACATGAACCGCATGAAC
CTGGCCGCCCAGCGATCCGGTCTGCCCACCTTCGAGGGCAAGGAGTTCGT
CCAGTGCCTGTCCCGCCTGCTGTCCATTGATTCCGAGTGGGTTCCTCACA
CGGACACCGCCAGCTTGTACATCCGCCCCACACTGATCGGCATTGATCCC
ACACTGGGAGTTGCTTCCTCCGACTCGGCCCTGCTCTACACGATCCTCAG
CCCCGTGGGCAGTTACTTTAAGACAGGCTCGTCCGGTGCCGTCTCCCTGC
TGGCCGATCCCAGTTATGTTCGTGCCTGGCCAGGCGGCGTGGGCAATCGC
AAAATGGGCTCCAACTACGCACCCACAATCAATGTGCAGAAGGAGGCGGC
CGCCAAGGGACTGCAGCAGGTGCTGTGGCTCTACGGCGAGGATCATCAGC
TAACCGAAGTGGGCACCATGAACATCTTTATGTTCTTCGTGAACGATCAA
GGAGAACAAGAACTGGTTACCCCACCGCTGAGCGGTCTAATCCTGCCCGG
TATCACCCGCGACTCCATCCTGCGCATGACCCGCCAGTGGGGCAAGTTTA
AGGTTAGCGAGGCGAACATCACCATGCCCATGGTCTGTGAGCTCCTCAAC
CAGGGAAGGCTGCTGGAGCTCTTTGGTGCGGGAACGGCGTGCGTGGTTAG
CCCCGTGAACAGGATCAGCTACCTTGGCCAGGATCTGTATATACCCACCA
TGGAGCAGGAGAAGCCCGTTCACGAGCTGATCCGCGAAACGCTCACCGAC
ATTCAGTACGGTCGGGTGGATCATCCGTGGGCGGTGGTGATCGACTAAAA
GCTTTCTAGACCAT

BS13249.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1673-RA 1332 CG1673-PA 1..1332 17..1348 6660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1673-RA 2510 CG1673-RA 373..1704 17..1348 6660 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13398583..13399004 45..466 2110 100 Plus
X 23542271 X 13399633..13399939 698..1004 1535 100 Plus
X 23542271 X 13399329..13399561 465..697 1165 100 Plus
X 23542271 X 13400229..13400418 1159..1348 950 100 Plus
X 23542271 X 13400005..13400161 1003..1159 785 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:55:53 has no hits.

BS13249.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:16 Download gff for BS13249.complete
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 379..1708 17..1346 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:35 Download gff for BS13249.complete
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 373..1702 17..1346 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:25 Download gff for BS13249.complete
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 379..1708 17..1346 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:03 Download gff for BS13249.complete
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 373..1702 17..1346 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:03 Download gff for BS13249.complete
Subject Subject Range Query Range Percent Splice Strand
X 13397271..13397300 17..46 100 -> Plus
X 13398585..13399004 47..466 100 -> Plus
X 13399331..13399561 467..697 100 -> Plus
X 13399633..13399939 698..1004 100 -> Plus
X 13400007..13400161 1005..1159 100 -> Plus
X 13400230..13400416 1160..1346 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:35 Download gff for BS13249.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13291304..13291333 17..46 100 -> Plus
arm_X 13292618..13293037 47..466 100 -> Plus
arm_X 13293364..13293594 467..697 100 -> Plus
arm_X 13293666..13293972 698..1004 100 -> Plus
arm_X 13294040..13294194 1005..1159 100 -> Plus
arm_X 13294263..13294449 1160..1346 100   Plus

BS13249.3prime Sequence

678 bp (620 high quality bases) assembled on 2006-10-13

> BS13249.3prime
ATGGTCTAGAAAGCTTTTAGTCGATCACCACCGCCCACGGATGATCCACC
CGACCGTACTGAATGTCGGTGAGCGTTTCGCGGATCAGCTCGTGAACGGG
CTTCTCCTGCTCCATGGTGGGTATATACAGATCCTGGCCAAGGTAGCTGA
TCCTGTTCACGGGGCTAACCACGCACGCCGTTCCCGCACCAAAGAGCTCC
AGCAGCCTTCCCTGGTTGAGGAGCTCACAGACCATGGGCATGGTGATGTT
CGCCTCGCTAACCTTAAACTTGCCCCACTGGCGGGTCATGCGCAGGATGG
AGTCGCGGGTGATACCGGGCAGGATTAGACCGCTCAGCGGTGGGGTAACC
AGTTCTTGTTCTCCTTGATCGTTCACGAAGAACATAAAGATGTTCATGGT
GCCCACTTCGGTTAGCTGATGATCCTCGCCGTAGAGCCACAGCACCTGCT
GCAGTCCCTTGGCGGCCGCCTCCTTCTGCACATTGATTGTGGGTGCGTAG
TTGGAGCCCATTTTGCGATTGCCCACGCCGCCTGGCCAGGCACGAACATA
ACTGGGATCGGCCAGCAGGGAGACGGCACCGGACGAGCCTGTCTTAAAGT
AACTGCCCACGGGGCTGAGGATCGTGTAAAGCAGGGCCGAGTCTGAGGAA
ACAACTCCCCAGTGTGGGATCAATGCCG

BS13249.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1673-PA 1332 CG1673-RA 672..1332 678..17 3195 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1673-RA 2510 CG1673-RA 1044..1704 678..17 3240 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13399641..13399939 659..361 1450 99 Minus
X 23542271 X 13400229..13400418 206..17 950 100 Minus
X 23542271 X 13400005..13400161 362..206 785 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:51:46 has no hits.

BS13249.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:55 Download gff for BS13249.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1673-PA 672..1332 17..678 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:37:25 Download gff for BS13249.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 1044..1704 17..678 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:10:28 Download gff for BS13249.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 1044..1704 17..678 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:10:28 Download gff for BS13249.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13399623..13399939 361..678 97 -> Minus
X 13400007..13400161 206..360 100 -> Minus
X 13400230..13400418 17..205 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:37:25 Download gff for BS13249.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13294263..13294451 17..205 100   Minus
arm_X 13293656..13293972 361..678 97 -> Minus
arm_X 13294040..13294194 206..360 100 -> Minus

BS13249.5prime Sequence

688 bp (655 high quality bases) assembled on 2006-10-13

> BS13249.5prime
GAAGTTATCAGTCGACATGACGACCAAAATGGCAATTAACGCAAAGGATA
TTTTCCGCAATCAGCATCGCCTGATCCGCTTCCTCGAGCAGTCGATCCGG
TTGTGCAGCAACCAGTCTCTGAAAGCCGCCCAAGCGGCACAGTTGCAACA
GAAATCGTCGGCGGACTTCGAGATCACCGCCTCGCTGGACGCCCAATACA
CCAGTGCCCCGGAGCCCATTAAGCATGACAAGAATCTGGGTCATCAGTTC
CGTGCCTCACAGATTTCCGTGCGACTGGCCGCACCGGAGCAACTGCAGCC
CAAGCCGGACAACGATGAGGAATTGGGTTTCGGCCGCCTATTCACCGATC
ACATGCTCAAGATCTACTACCACAAGAGTTTGGGCGGATGGCAGCGACCG
GAGATTACGCCGCTGGAGAATCTAGTGATGCATCCCGCCGCCAAGGTCCT
GCACTACGCCGTTGAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCGTCG
ATGGCAAGATCCGCATCTTCCGGCCGGACATGAACATGAACCGCATGAAC
CTGGCCGCCCAGCGATCCGGTCTGCCCACCTTCGAGGGCAAGGAGTTCGT
CCAGTGCCTGTCCCGCCTGCTGTCCATTGATTCCGAGTGGGTTCCTCACA
CGGACACCGCCAGCTTGTACATCCGCCCCACACTGATC

BS13249.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1673-PA 1332 CG1673-RA 1..672 17..688 3360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1673-RA 2510 CG1673-RA 373..1044 17..688 3360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13398583..13399004 45..466 2110 100 Plus
X 23542271 X 13399329..13399552 465..688 1120 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:16:42 has no hits.

BS13249.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:55 Download gff for BS13249.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1673-PA 1..672 17..688 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:35:18 Download gff for BS13249.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 365..1044 8..688 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:00 Download gff for BS13249.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 365..1044 8..688 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:00 Download gff for BS13249.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13398585..13399004 47..466 100 -> Plus
X 13399331..13399552 467..688 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:35:18 Download gff for BS13249.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13292618..13293037 47..466 100 -> Plus
arm_X 13293364..13293585 467..688 100   Plus

BS13249.pep Sequence

Translation from 16 to 1347

> BS13249.pep
MTTKMAINAKDIFRNQHRLIRFLEQSIRLCSNQSLKAAQAAQLQQKSSAD
FEITASLDAQYTSAPEPIKHDKNLGHQFRASQISVRLAAPEQLQPKPDND
EELGFGRLFTDHMLKIYYHKSLGGWQRPEITPLENLVMHPAAKVLHYAVE
LFEGMKAYRGVDGKIRIFRPDMNMNRMNLAAQRSGLPTFEGKEFVQCLSR
LLSIDSEWVPHTDTASLYIRPTLIGIDPTLGVASSDSALLYTILSPVGSY
FKTGSSGAVSLLADPSYVRAWPGGVGNRKMGSNYAPTINVQKEAAAKGLQ
QVLWLYGEDHQLTEVGTMNIFMFFVNDQGEQELVTPPLSGLILPGITRDS
ILRMTRQWGKFKVSEANITMPMVCELLNQGRLLELFGAGTACVVSPVNRI
SYLGQDLYIPTMEQEKPVHELIRETLTDIQYGRVDHPWAVVID*

BS13249.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1673-PA 443 CG1673-PA 1..443 1..443 2299 100 Plus