Clone Sequence Records
BS13249.complete Sequence
1364 bp assembled on 2009-12-07
GenBank Submission: KX804682
> BS13249.complete
GAAGTTATCAGTCGACATGACGACCAAAATGGCAATTAACGCAAAGGATA
TTTTCCGCAATCAGCATCGCCTGATCCGCTTCCTCGAGCAGTCGATCCGG
TTGTGCAGCAACCAGTCTCTGAAAGCCGCCCAAGCGGCACAGTTGCAACA
GAAATCGTCGGCGGACTTCGAGATCACCGCCTCGCTGGACGCCCAATACA
CCAGTGCCCCGGAGCCCATTAAGCATGACAAGAATCTGGGTCATCAGTTC
CGTGCCTCACAGATTTCCGTGCGACTGGCCGCACCGGAGCAACTGCAGCC
CAAGCCGGACAACGATGAGGAATTGGGTTTCGGCCGCCTATTCACCGATC
ACATGCTCAAGATCTACTACCACAAGAGTTTGGGCGGATGGCAGCGACCG
GAGATTACGCCGCTGGAGAATCTAGTGATGCATCCCGCCGCCAAGGTCCT
GCACTACGCCGTTGAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCGTCG
ATGGCAAGATCCGCATCTTCCGGCCGGACATGAACATGAACCGCATGAAC
CTGGCCGCCCAGCGATCCGGTCTGCCCACCTTCGAGGGCAAGGAGTTCGT
CCAGTGCCTGTCCCGCCTGCTGTCCATTGATTCCGAGTGGGTTCCTCACA
CGGACACCGCCAGCTTGTACATCCGCCCCACACTGATCGGCATTGATCCC
ACACTGGGAGTTGCTTCCTCCGACTCGGCCCTGCTCTACACGATCCTCAG
CCCCGTGGGCAGTTACTTTAAGACAGGCTCGTCCGGTGCCGTCTCCCTGC
TGGCCGATCCCAGTTATGTTCGTGCCTGGCCAGGCGGCGTGGGCAATCGC
AAAATGGGCTCCAACTACGCACCCACAATCAATGTGCAGAAGGAGGCGGC
CGCCAAGGGACTGCAGCAGGTGCTGTGGCTCTACGGCGAGGATCATCAGC
TAACCGAAGTGGGCACCATGAACATCTTTATGTTCTTCGTGAACGATCAA
GGAGAACAAGAACTGGTTACCCCACCGCTGAGCGGTCTAATCCTGCCCGG
TATCACCCGCGACTCCATCCTGCGCATGACCCGCCAGTGGGGCAAGTTTA
AGGTTAGCGAGGCGAACATCACCATGCCCATGGTCTGTGAGCTCCTCAAC
CAGGGAAGGCTGCTGGAGCTCTTTGGTGCGGGAACGGCGTGCGTGGTTAG
CCCCGTGAACAGGATCAGCTACCTTGGCCAGGATCTGTATATACCCACCA
TGGAGCAGGAGAAGCCCGTTCACGAGCTGATCCGCGAAACGCTCACCGAC
ATTCAGTACGGTCGGGTGGATCATCCGTGGGCGGTGGTGATCGACTAAAA
GCTTTCTAGACCAT
BS13249.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:55:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1673-RA | 1332 | CG1673-PA | 1..1332 | 17..1348 | 6660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1673-RA | 2510 | CG1673-RA | 373..1704 | 17..1348 | 6660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13398583..13399004 | 45..466 | 2110 | 100 | Plus |
X | 23542271 | X | 13399633..13399939 | 698..1004 | 1535 | 100 | Plus |
X | 23542271 | X | 13399329..13399561 | 465..697 | 1165 | 100 | Plus |
X | 23542271 | X | 13400229..13400418 | 1159..1348 | 950 | 100 | Plus |
X | 23542271 | X | 13400005..13400161 | 1003..1159 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:55:53 has no hits.
BS13249.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:16 Download gff for
BS13249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-RA | 379..1708 | 17..1346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:35 Download gff for
BS13249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-RA | 373..1702 | 17..1346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:25 Download gff for
BS13249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-RA | 379..1708 | 17..1346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:03 Download gff for
BS13249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-RA | 373..1702 | 17..1346 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:03 Download gff for
BS13249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13397271..13397300 | 17..46 | 100 | -> | Plus |
X | 13398585..13399004 | 47..466 | 100 | -> | Plus |
X | 13399331..13399561 | 467..697 | 100 | -> | Plus |
X | 13399633..13399939 | 698..1004 | 100 | -> | Plus |
X | 13400007..13400161 | 1005..1159 | 100 | -> | Plus |
X | 13400230..13400416 | 1160..1346 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:35 Download gff for
BS13249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13291304..13291333 | 17..46 | 100 | -> | Plus |
arm_X | 13292618..13293037 | 47..466 | 100 | -> | Plus |
arm_X | 13293364..13293594 | 467..697 | 100 | -> | Plus |
arm_X | 13293666..13293972 | 698..1004 | 100 | -> | Plus |
arm_X | 13294040..13294194 | 1005..1159 | 100 | -> | Plus |
arm_X | 13294263..13294449 | 1160..1346 | 100 | | Plus |
BS13249.3prime Sequence
678 bp (620 high quality bases) assembled on 2006-10-13
> BS13249.3prime
ATGGTCTAGAAAGCTTTTAGTCGATCACCACCGCCCACGGATGATCCACC
CGACCGTACTGAATGTCGGTGAGCGTTTCGCGGATCAGCTCGTGAACGGG
CTTCTCCTGCTCCATGGTGGGTATATACAGATCCTGGCCAAGGTAGCTGA
TCCTGTTCACGGGGCTAACCACGCACGCCGTTCCCGCACCAAAGAGCTCC
AGCAGCCTTCCCTGGTTGAGGAGCTCACAGACCATGGGCATGGTGATGTT
CGCCTCGCTAACCTTAAACTTGCCCCACTGGCGGGTCATGCGCAGGATGG
AGTCGCGGGTGATACCGGGCAGGATTAGACCGCTCAGCGGTGGGGTAACC
AGTTCTTGTTCTCCTTGATCGTTCACGAAGAACATAAAGATGTTCATGGT
GCCCACTTCGGTTAGCTGATGATCCTCGCCGTAGAGCCACAGCACCTGCT
GCAGTCCCTTGGCGGCCGCCTCCTTCTGCACATTGATTGTGGGTGCGTAG
TTGGAGCCCATTTTGCGATTGCCCACGCCGCCTGGCCAGGCACGAACATA
ACTGGGATCGGCCAGCAGGGAGACGGCACCGGACGAGCCTGTCTTAAAGT
AACTGCCCACGGGGCTGAGGATCGTGTAAAGCAGGGCCGAGTCTGAGGAA
ACAACTCCCCAGTGTGGGATCAATGCCG
BS13249.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:47:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1673-PA | 1332 | CG1673-RA | 672..1332 | 678..17 | 3195 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1673-RA | 2510 | CG1673-RA | 1044..1704 | 678..17 | 3240 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:51:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13399641..13399939 | 659..361 | 1450 | 99 | Minus |
X | 23542271 | X | 13400229..13400418 | 206..17 | 950 | 100 | Minus |
X | 23542271 | X | 13400005..13400161 | 362..206 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:51:46 has no hits.
BS13249.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:55 Download gff for
BS13249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-PA | 672..1332 | 17..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:37:25 Download gff for
BS13249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-RA | 1044..1704 | 17..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:10:28 Download gff for
BS13249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-RA | 1044..1704 | 17..678 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:10:28 Download gff for
BS13249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13399623..13399939 | 361..678 | 97 | -> | Minus |
X | 13400007..13400161 | 206..360 | 100 | -> | Minus |
X | 13400230..13400418 | 17..205 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:37:25 Download gff for
BS13249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13294263..13294451 | 17..205 | 100 | | Minus |
arm_X | 13293656..13293972 | 361..678 | 97 | -> | Minus |
arm_X | 13294040..13294194 | 206..360 | 100 | -> | Minus |
BS13249.5prime Sequence
688 bp (655 high quality bases) assembled on 2006-10-13
> BS13249.5prime
GAAGTTATCAGTCGACATGACGACCAAAATGGCAATTAACGCAAAGGATA
TTTTCCGCAATCAGCATCGCCTGATCCGCTTCCTCGAGCAGTCGATCCGG
TTGTGCAGCAACCAGTCTCTGAAAGCCGCCCAAGCGGCACAGTTGCAACA
GAAATCGTCGGCGGACTTCGAGATCACCGCCTCGCTGGACGCCCAATACA
CCAGTGCCCCGGAGCCCATTAAGCATGACAAGAATCTGGGTCATCAGTTC
CGTGCCTCACAGATTTCCGTGCGACTGGCCGCACCGGAGCAACTGCAGCC
CAAGCCGGACAACGATGAGGAATTGGGTTTCGGCCGCCTATTCACCGATC
ACATGCTCAAGATCTACTACCACAAGAGTTTGGGCGGATGGCAGCGACCG
GAGATTACGCCGCTGGAGAATCTAGTGATGCATCCCGCCGCCAAGGTCCT
GCACTACGCCGTTGAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCGTCG
ATGGCAAGATCCGCATCTTCCGGCCGGACATGAACATGAACCGCATGAAC
CTGGCCGCCCAGCGATCCGGTCTGCCCACCTTCGAGGGCAAGGAGTTCGT
CCAGTGCCTGTCCCGCCTGCTGTCCATTGATTCCGAGTGGGTTCCTCACA
CGGACACCGCCAGCTTGTACATCCGCCCCACACTGATC
BS13249.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1673-PA | 1332 | CG1673-RA | 1..672 | 17..688 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:16:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1673-RA | 2510 | CG1673-RA | 373..1044 | 17..688 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:16:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13398583..13399004 | 45..466 | 2110 | 100 | Plus |
X | 23542271 | X | 13399329..13399552 | 465..688 | 1120 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:16:42 has no hits.
BS13249.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:55 Download gff for
BS13249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-PA | 1..672 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:35:18 Download gff for
BS13249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-RA | 365..1044 | 8..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:00 Download gff for
BS13249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-RA | 365..1044 | 8..688 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:00 Download gff for
BS13249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13398585..13399004 | 47..466 | 100 | -> | Plus |
X | 13399331..13399552 | 467..688 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:35:18 Download gff for
BS13249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13292618..13293037 | 47..466 | 100 | -> | Plus |
arm_X | 13293364..13293585 | 467..688 | 100 | | Plus |
BS13249.pep Sequence
Translation from 16 to 1347
> BS13249.pep
MTTKMAINAKDIFRNQHRLIRFLEQSIRLCSNQSLKAAQAAQLQQKSSAD
FEITASLDAQYTSAPEPIKHDKNLGHQFRASQISVRLAAPEQLQPKPDND
EELGFGRLFTDHMLKIYYHKSLGGWQRPEITPLENLVMHPAAKVLHYAVE
LFEGMKAYRGVDGKIRIFRPDMNMNRMNLAAQRSGLPTFEGKEFVQCLSR
LLSIDSEWVPHTDTASLYIRPTLIGIDPTLGVASSDSALLYTILSPVGSY
FKTGSSGAVSLLADPSYVRAWPGGVGNRKMGSNYAPTINVQKEAAAKGLQ
QVLWLYGEDHQLTEVGTMNIFMFFVNDQGEQELVTPPLSGLILPGITRDS
ILRMTRQWGKFKVSEANITMPMVCELLNQGRLLELFGAGTACVVSPVNRI
SYLGQDLYIPTMEQEKPVHELIRETLTDIQYGRVDHPWAVVID*
BS13249.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1673-PA | 443 | CG1673-PA | 1..443 | 1..443 | 2299 | 100 | Plus |