Clone Sequence Records
BS13251.3prime Sequence
660 bp (653 high quality bases) assembled on 2006-10-13
> BS13251.3prime
ATGGTCTAGAAAGCTTTTAAGTCTGCTGGATTGAGCTCAAAAATGCTGGA
TCCACCGATGCCACCTTGGCCGTAAGAAACGCGTGCATGCAGAACAGCAG
ACTTTGCAGGACTTGGCATTCCAGCTCCTTGGTTTCTATTGCACGGCTAT
CGTGATCCTGGAAATGCAACTTCAGCTTCGATTTACCATCATCACTGGAG
CCCCTCAGCTGGGAGAATTTATACTGCCAAACTGTGGCGGATTCGGCTCC
TTCGGTTAATGAAAAACCAGCTTGCCAGTCCAGCGTGAGTCCACCACTTT
TTCCATGATGCGACACGGCAAAGGTCTTACGGCCCAGTTTGATGACACTT
GTCACAATGGCCGCATTCCAGCTGTTTTCGATTCTCAAAAGCTCCTGACG
GGTTTCCACGCTCAAATAGCGCGGTTCATGACCCGAACTTTGCAGCAGGA
AACAATGCTGACGACTATCCACGGTCTCCGATTCCTTGACAATGCGGAAC
ATGGTCTGGTAGACCTTGTAGACCACCAAAGCCTTACTAATGCCAGCCAC
ATTTAGTGGTGGCGTTTCAAAGAGCATCACTTCAGTGCCTTTGAGCAGTA
AAAACCTGGGCTTGTAGCTCTGCCACGATATATTGTTGTTAATTGACACC
TTCATTCCCC
BS13251.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:47:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4905-PA | 1545 | Syn2-RA | 906..1545 | 657..17 | 3140 | 99.6 | Minus |
| CG4905-PB | 1545 | Syn2-RB | 906..1545 | 657..17 | 3140 | 99.6 | Minus |
| CG4905-PC | 1380 | Syn2-RC | 741..1380 | 657..17 | 3140 | 99.6 | Minus |
| CG4905-PD | 1380 | Syn2-RD | 741..1380 | 657..17 | 3140 | 99.6 | Minus |
| CG4905-PE | 1560 | Syn2-RE | 921..1560 | 657..17 | 3140 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syn2-RE | 1888 | CG4905-RE | 952..1592 | 657..16 | 3170 | 99.7 | Minus |
| Syn2-RC | 1723 | CG4905-RC | 787..1427 | 657..16 | 3170 | 99.7 | Minus |
| Syn2-RB | 3475 | CG4905-RB | 1079..1719 | 657..16 | 3170 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:17:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16556069..16556293 | 556..332 | 1125 | 100 | Minus |
| 2R | 25286936 | 2R | 16556353..16556557 | 331..127 | 1025 | 100 | Minus |
| 2R | 25286936 | 2R | 16556617..16556730 | 129..16 | 570 | 100 | Minus |
| 2R | 25286936 | 2R | 16555904..16556003 | 657..557 | 440 | 98 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:17:29 has no hits.
BS13251.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:56 Download gff for
BS13251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4905-PE | 917..1560 | 17..660 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:35:20 Download gff for
BS13251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syn2-RB | 1075..1719 | 16..660 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:07:13 Download gff for
BS13251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syn2-RB | 1075..1719 | 16..660 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:07:13 Download gff for
BS13251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16555900..16556003 | 557..660 | 97 | -> | Minus |
| 2R | 16556069..16556293 | 332..556 | 100 | -> | Minus |
| 2R | 16556353..16556556 | 128..331 | 100 | -> | Minus |
| 2R | 16556619..16556730 | 16..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:35:20 Download gff for
BS13251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12443405..12443508 | 557..660 | 97 | -> | Minus |
| arm_2R | 12443574..12443798 | 332..556 | 100 | -> | Minus |
| arm_2R | 12443858..12444061 | 128..331 | 100 | -> | Minus |
| arm_2R | 12444124..12444235 | 16..127 | 100 | | Minus |
BS13251.5prime Sequence
715 bp (649 high quality bases) assembled on 2006-10-13
> BS13251.5prime
GAAGTTATCAGTCGACATGAAGCTCTCTGACACCATGGCCACGCCTATAG
AAGAAAAACTCGACCAAAACCTGAAGGTGCGAACTGGAATGGTGCACGTG
AGCGATGGCAAGAGCAGACCAGAACCGCTTCGACTTAATCTTACCATGGA
GTTGCTTTCGCTGCAGAAGCTGGAAGTGGTAACACCAAGTAGTTGTCACC
CCAATGGACCACCCATGGAATCAAAGGAACGTATGGTTCAAATTACGCGC
CAAAAACAAGGCGGCCTAGGACTGAGCATAAAAGGTGGCGCCGAGCATAA
ACTACCCATTTTGATATCGCGTATCTATAAGGATCAGGCTGCGGACATAA
CGGGCCAACTATTTGTTGGCGATGCCATCATCAAGGTCAACGGAGAATAC
ATCACGGCATGTCCTCACGATGATGCCGTCAATATATTGAGAAACGCTGG
CGATATTGTTGTGCTCACTGTTAAGCATTATCGCGCAGCCACGCCTTTCC
TTCAGAAACAACTGACCAAGGACACACCCGACTCGGACAACGATGTCACA
TGTGCCGAACTGAAGGCTGACGAGGGCTACAAGTCATCCGTCAATAGTGG
AACCATCAGTCGCAGTTGTAGTCGCCCCATGTCAATTTGCTCGGAGCCCG
AAAAGCGCTGGACCGACGTGGTTGCCGTACCTCTAATGATGGGATATGTG
ACGAGGTACATCTAT
BS13251.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4905-PA | 1545 | Syn2-RA | 1..699 | 17..715 | 3445 | 99.7 | Plus |
| CG4905-PB | 1545 | Syn2-RB | 1..699 | 17..715 | 3445 | 99.7 | Plus |
| CG4905-PE | 1560 | Syn2-RE | 16..714 | 17..715 | 3445 | 99.7 | Plus |
| CG4905-PC | 1380 | Syn2-RC | 1..497 | 17..513 | 2485 | 100 | Plus |
| CG4905-PD | 1380 | Syn2-RD | 1..497 | 17..513 | 2485 | 100 | Plus |
| CG4905-PC | 1380 | Syn2-RC | 497..534 | 678..715 | 165 | 97.3 | Plus |
| CG4905-PD | 1380 | Syn2-RD | 497..534 | 678..715 | 165 | 97.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syn2-RE | 1888 | CG4905-RE | 47..745 | 17..715 | 3465 | 99.7 | Plus |
| Syn2-RB | 3475 | CG4905-RB | 174..872 | 17..715 | 3465 | 99.7 | Plus |
| Syn2-RA | 3671 | CG4905-RA | 370..1068 | 17..715 | 3465 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16554966..16555253 | 225..512 | 1440 | 100 | Plus |
| 2R | 25286936 | 2R | 16555319..16555483 | 513..677 | 810 | 99.4 | Plus |
| 2R | 25286936 | 2R | 16554757..16554909 | 75..227 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 16554633..16554694 | 17..78 | 310 | 100 | Plus |
| 2R | 25286936 | 2R | 16555599..16555642 | 672..715 | 190 | 95.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:22:06 has no hits.
BS13251.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:57 Download gff for
BS13251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4905-PB | 1..699 | 17..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:51:23 Download gff for
BS13251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syn2-RA | 370..1068 | 17..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:41:33 Download gff for
BS13251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syn2-RA | 370..1068 | 17..715 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:41:33 Download gff for
BS13251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16554633..16554692 | 17..76 | 100 | -> | Plus |
| 2R | 16554759..16554908 | 77..226 | 100 | -> | Plus |
| 2R | 16554968..16555253 | 227..512 | 100 | -> | Plus |
| 2R | 16555319..16555483 | 513..677 | 99 | -> | Plus |
| 2R | 16555605..16555642 | 678..715 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:51:23 Download gff for
BS13251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12442138..12442197 | 17..76 | 100 | -> | Plus |
| arm_2R | 12442264..12442413 | 77..226 | 100 | -> | Plus |
| arm_2R | 12442473..12442758 | 227..512 | 100 | -> | Plus |
| arm_2R | 12442824..12442988 | 513..677 | 99 | -> | Plus |
| arm_2R | 12443110..12443147 | 678..715 | 97 | | Plus |
BS13251.complete Sequence
1577 bp assembled on 2008-08-15
GenBank Submission: KX806502
> BS13251.complete
GAAGTTATCAGTCGACATGAAGCTCTCTGACACCATGGCCACGCCTATAG
AAGAAAAACTCGACCAAAACCTGAAGGTGCGAACTGGAATGGTGCACGTG
AGCGATGGCAAGAGCAGACCAGAACCGCTTCGACTTAATCTTACCATGGA
GTTGCTTTCGCTGCAGAAGCTGGAAGTGGTAACACCAAGTAGTTGTCACC
CCAATGGACCACCCATGGAATCAAAGGAACGTATGGTTCAAATTACGCGC
CAAAAACAAGGCGGCCTAGGACTGAGCATAAAAGGTGGCGCCGAGCATAA
ACTACCCATTTTGATATCGCGTATCTATAAGGATCAGGCTGCGGACATAA
CGGGCCAACTATTTGTTGGCGATGCCATCATCAAGGTCAACGGAGAATAC
ATCACGGCATGTCCTCACGATGATGCCGTCAATATATTGAGAAACGCTGG
CGATATTGTTGTGCTCACTGTTAAGCATTATCGCGCAGCCACGCCTTTCC
TTCAGAAACAACTGACCAAGGACACACCCGACTCGGACAACGATGTCACA
TGTGCCGAACTGAAGGCTGACGAGGGCTACAAGTCATCCGTCAATAGTGG
AACCATCAGTCGCAGTTGTAGTCGCCCCATGTCAATTTGCTCGGAGCCCG
AGAAGCGCTGGACCGACGTGGTTGCCGTACCTCTAATGATGGCATATGTG
ACGAGGTACATCTATGGCACCGACAAGCTGCGACAAAATGCCTTCGAAGT
TCGCGGTCTGAATGGAATTTCCACAGGTGTCATACACTGTGACGAACTGG
CCATACTTAGTCAGTGGCTGAAATTGATAACAGACAATGTTGTGGGCCTG
ACGCATTTACAGATGAAGCTATATAATAGAAACTTTGCTGTGGGCGAGCG
CATTGAGTACATGGGCTGGGTGAATGAAGGTGTCATTAACAACAATATAT
CGTGGCAGAGCTACAAGCCCAGGTTTCTACTGCTCAAAGGCACTGAAGTG
ATGCTCTTTGAAACGCCACCACTAAATGTGGCTGGCATTAGTAAGGCTTT
GGTGGTCTACAAGGTCTACCAGACCATGTTCCGCATTGTCAAGGAATCGG
AGACCGTGGATAGTCGTCAGCATTGTTTCCTGCTGCAAAGTTCGGGTCAT
GAACCGCGCTATTTGAGCGTGGAAACCCGTCAGGAGCTTTTGAGAATCGA
AAACAGCTGGAATGCGGCCATTGTGACAAGTGTCATCAAACTGGGCCGTA
AGACCTTTGCCGTGTCGCATCATGGAAAAAGTGGTGGACTCACGCTGGAC
TGGCAAGCTGGTTTTTCATTAACCGAAGGAGCCGAATCCGCCACAGTTTG
GCAGTATAAATTCTCCCAGCTGAGGGGCTCCAGTGATGATGGTAAATCGA
AGCTGAAGTTGCATTTCCAGGATCACGATAGCCGTGCAATAGAAACCAAG
GAGCTGGAATGCCAAGTCCTGCAAAGTCTGCTGTTCTGCATGCACGCGTT
TCTTACGGCCAAGGTGGCATCGGTGGATCCAGCATTTTTGAGCTCAATCC
AGCAGACTTAAAAGCTTTCTAGACCAT
BS13251.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syn2-RE | 1560 | CG4905-PE | 16..1560 | 17..1561 | 7725 | 100 | Plus |
| Syn2-RB | 1545 | CG4905-PB | 1..1545 | 17..1561 | 7725 | 100 | Plus |
| Syn2-RA | 1545 | CG4905-PA | 1..1545 | 17..1561 | 7725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syn2-RE | 1888 | CG4905-RE | 47..1592 | 17..1562 | 7730 | 100 | Plus |
| Syn2-RB | 3475 | CG4905-RB | 174..1719 | 17..1562 | 7730 | 100 | Plus |
| Syn2-RA | 3671 | CG4905-RA | 370..1915 | 17..1562 | 7730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16554966..16555253 | 225..512 | 1440 | 100 | Plus |
| 2R | 25286936 | 2R | 16556069..16556293 | 1022..1246 | 1125 | 100 | Plus |
| 2R | 25286936 | 2R | 16556353..16556557 | 1247..1451 | 1025 | 100 | Plus |
| 2R | 25286936 | 2R | 16555599..16555789 | 672..862 | 940 | 99.5 | Plus |
| 2R | 25286936 | 2R | 16555319..16555483 | 513..677 | 825 | 100 | Plus |
| 2R | 25286936 | 2R | 16555843..16556003 | 861..1021 | 805 | 100 | Plus |
| 2R | 25286936 | 2R | 16554757..16554909 | 75..227 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 16556617..16556730 | 1449..1562 | 570 | 100 | Plus |
| 2R | 25286936 | 2R | 16554633..16554694 | 17..78 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:29:01 has no hits.
BS13251.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:40:41 Download gff for
BS13251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syn2-RE | 43..1588 | 17..1562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:08 Download gff for
BS13251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syn2-RA | 370..1912 | 17..1559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:00 Download gff for
BS13251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syn2-RE | 43..1585 | 17..1559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:16 Download gff for
BS13251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syn2-RA | 370..1912 | 17..1559 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:16 Download gff for
BS13251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16555845..16556003 | 863..1021 | 100 | -> | Plus |
| 2R | 16554633..16554692 | 17..76 | 100 | -> | Plus |
| 2R | 16554759..16554908 | 77..226 | 100 | -> | Plus |
| 2R | 16554968..16555253 | 227..512 | 100 | -> | Plus |
| 2R | 16555319..16555483 | 513..677 | 100 | -> | Plus |
| 2R | 16555605..16555789 | 678..862 | 100 | -> | Plus |
| 2R | 16556069..16556293 | 1022..1246 | 100 | -> | Plus |
| 2R | 16556353..16556556 | 1247..1450 | 100 | -> | Plus |
| 2R | 16556619..16556727 | 1451..1559 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:08 Download gff for
BS13251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12442138..12442197 | 17..76 | 100 | -> | Plus |
| arm_2R | 12442264..12442413 | 77..226 | 100 | -> | Plus |
| arm_2R | 12442473..12442758 | 227..512 | 100 | -> | Plus |
| arm_2R | 12442824..12442988 | 513..677 | 100 | -> | Plus |
| arm_2R | 12443110..12443294 | 678..862 | 100 | -> | Plus |
| arm_2R | 12443350..12443508 | 863..1021 | 100 | -> | Plus |
| arm_2R | 12443574..12443798 | 1022..1246 | 100 | -> | Plus |
| arm_2R | 12443858..12444061 | 1247..1450 | 100 | -> | Plus |
| arm_2R | 12444124..12444232 | 1451..1559 | 100 | | Plus |
BS13251.pep Sequence
Translation from 16 to 1560
> BS13251.pep
MKLSDTMATPIEEKLDQNLKVRTGMVHVSDGKSRPEPLRLNLTMELLSLQ
KLEVVTPSSCHPNGPPMESKERMVQITRQKQGGLGLSIKGGAEHKLPILI
SRIYKDQAADITGQLFVGDAIIKVNGEYITACPHDDAVNILRNAGDIVVL
TVKHYRAATPFLQKQLTKDTPDSDNDVTCAELKADEGYKSSVNSGTISRS
CSRPMSICSEPEKRWTDVVAVPLMMAYVTRYIYGTDKLRQNAFEVRGLNG
ISTGVIHCDELAILSQWLKLITDNVVGLTHLQMKLYNRNFAVGERIEYMG
WVNEGVINNNISWQSYKPRFLLLKGTEVMLFETPPLNVAGISKALVVYKV
YQTMFRIVKESETVDSRQHCFLLQSSGHEPRYLSVETRQELLRIENSWNA
AIVTSVIKLGRKTFAVSHHGKSGGLTLDWQAGFSLTEGAESATVWQYKFS
QLRGSSDDGKSKLKLHFQDHDSRAIETKELECQVLQSLLFCMHAFLTAKV
ASVDPAFLSSIQQT*
BS13251.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:29:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syn2-PE | 519 | CG4905-PE | 6..519 | 1..514 | 2653 | 100 | Plus |
| Syn2-PB | 514 | CG4905-PB | 1..514 | 1..514 | 2653 | 100 | Plus |
| Syn2-PA | 514 | CG4905-PA | 1..514 | 1..514 | 2653 | 100 | Plus |
| Syn2-PC | 459 | CG4905-PC | 166..459 | 221..514 | 1517 | 99.7 | Plus |
| Syn2-PC | 459 | CG4905-PC | 1..166 | 1..166 | 846 | 100 | Plus |
| Syn1-PE | 624 | CG7152-PE | 159..623 | 69..503 | 310 | 23.7 | Plus |
