Clone Sequence Records
BS13252.3prime Sequence
644 bp (581 high quality bases) assembled on 2006-10-13
> BS13252.3prime
ATGGTCTAGAAAGCTTTTAGTACGAGATGCCGGTGTTGTCGCGGATCCAG
TCCAAGTATCCGGTGACACGGCTGAAGACAGCGGGAGCACCAGACTGGCA
GCCGGCGGAGGAAACGAAGGAGGTTACTCCGACCAGGCGGTTGCCCTCGT
GTGTGACCAGGGGACCACCGGAGTCACCTCCGCAGGTGGACTTTCCGCCG
TTGGTGTTGATGCAAATCATGTTGTCGTGGAGAGACCACGAGCGGCTGCA
ATCACTCTGGGACATGATCTGGACATCGACAGCCTGGAGCCAGTCGGGCA
GTGGGCTGCCATCGTAGGTGCCGCCCCATCCGGAGGCCACGGCCCACCAT
CCGGCGTAGTCCTGGTAGCGGTCGTTGTAGCTGGGCAACTCCACCTTGTT
GACCAGGTGCCAGAAGTCGACGTGCGGGGTGCGGATCAGGGAGATGTCGT
TGTGCAGGTTGCCGCTGTTGTAGTGGTGGTGCTGGACGAAGTTTCCGCTT
CCAACCCAGTGGGTGTACTGGGGCTGGTTGCGCAGACTGGCTCCGTAGTT
GATGGTCACTCCACTGGCTCCGTTGGTGCAGTGAGCGGCGGTCAAGACCC
AGGTGTTGCCGATGATCGAGCCACCGCACCACCAGTTTCCATTG
BS13252.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2229-PA | 804 | Jon99Fii-RA | 177..804 | 644..17 | 3090 | 99.6 | Minus |
CG18030-PA | 804 | Jon99Fi-RA | 177..804 | 644..17 | 2890 | 98.4 | Minus |
CG31034-PA | 798 | Jon99Cii-RA | 329..798 | 486..17 | 1600 | 93.6 | Minus |
CG31362-PA | 798 | Jon99Ciii-RA | 329..798 | 486..17 | 1575 | 93.4 | Minus |
CG31362-PA | 798 | Jon99Ciii-RA | 175..278 | 640..537 | 495 | 99 | Minus |
CG31034-PA | 798 | Jon99Cii-RA | 175..278 | 640..537 | 470 | 98 | Minus |
CG8869-PA | 831 | Jon25Bii-RA | 378..456 | 461..383 | 220 | 91.1 | Minus |
CG8871-PA | 777 | Jon25Biii-RA | 350..422 | 441..369 | 215 | 91.7 | Minus |
CG8867-PA | 801 | Jon25Bi-RA | 363..450 | 452..365 | 215 | 89.7 | Minus |
CG8867-PB | 801 | Jon25Bi-RB | 363..450 | 452..365 | 215 | 89.7 | Minus |
CG8871-PA | 777 | Jon25Biii-RA | 441..503 | 350..288 | 190 | 92 | Minus |
CG8579-PA | 816 | Jon44E-RA | 419..459 | 405..365 | 180 | 97.5 | Minus |
CG7118-PA | 783 | Jon66Ci-RA | 364..423 | 424..365 | 175 | 91.6 | Minus |
CG7170-PA | 789 | Jon66Cii-RA | 376..435 | 424..365 | 175 | 91.6 | Minus |
CG8579-PA | 816 | Jon44E-RA | 763..806 | 70..27 | 170 | 95.4 | Minus |
CG8579-PA | 816 | Jon44E-RA | 619..678 | 214..155 | 150 | 90 | Minus |
CG8869-PA | 831 | Jon25Bii-RA | 204..242 | 635..597 | 145 | 94.8 | Minus |
CG18180-PA | 795 | CG18180-RA | 634..671 | 184..147 | 140 | 94.7 | Minus |
CG6580-PA | 780 | Jon65Aii-RA | 332..378 | 456..410 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:25:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon99Fii-RA | 913 | CG2229-RA | 202..835 | 644..11 | 3125 | 99.5 | Minus |
Jon99Fi-RA | 933 | CG18030-RA | 202..829 | 644..17 | 2990 | 98.4 | Minus |
Jon99Ciii-RB | 1240 | CG31362-RB | 197..824 | 644..17 | 2480 | 93 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:25:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30487094..30487727 | 11..644 | 3125 | 99.5 | Plus |
3R | 32079331 | 3R | 30489164..30489791 | 644..17 | 2990 | 98.4 | Minus |
3R | 32079331 | 3R | 29922412..29923039 | 644..17 | 2480 | 93 | Minus |
3R | 32079331 | 3R | 29923790..29924417 | 17..644 | 2480 | 93 | Plus |
2L | 23513712 | 2L | 4949972..4950403 | 17..445 | 700 | 78 | Plus |
3L | 28110227 | 3L | 8392871..8393288 | 27..441 | 540 | 75.8 | Plus |
2L | 23513712 | 2L | 4952599..4952911 | 323..635 | 530 | 78 | Plus |
2L | 23513712 | 2L | 4954674..4954941 | 365..635 | 435 | 78.2 | Plus |
2L | 23513712 | 2L | 4952284..4952494 | 17..227 | 275 | 75.4 | Plus |
2L | 23513712 | 2L | 4954338..4954509 | 29..200 | 215 | 75 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:25:31 has no hits.
BS13252.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:57 Download gff for
BS13252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2229-PA | 177..804 | 17..644 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:52 Download gff for
BS13252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Fii-RA | 202..835 | 11..644 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:37:02 Download gff for
BS13252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Fii-RA | 202..835 | 11..644 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:37:02 Download gff for
BS13252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30487094..30487727 | 11..644 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:52 Download gff for
BS13252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26312816..26313449 | 11..644 | 99 | | Plus |
BS13252.5prime Sequence
668 bp (646 high quality bases) assembled on 2006-10-13
> BS13252.5prime
GAAGTTATCAGTCGACATGAAACTGTTCGTATTCCTGGCTCTGGCCGTGG
CCGCCGCCACAGCCATTCCTACCCCGGAGCAAAAGTTGGTCCCCACCCCG
GTGAAGGATGTCAAGATCCAGGGTCGCATTACCAACGGCTACCCAGCCTA
CGAGGGCAAGGTACCCTACATCGTGGGTCTCCTTTTCAGTGGCAATGGAA
ACTGGTGGTGCGGTGGCTCGATCATCGGCAACACCTGGGTCCTGACCGCC
GCCCACTGCACCAACGGAGCCAGTGGAGTGACCATCAACTACGGAGCCAG
TCTGCGCAACCAGCCCCAGTACACCCACTGGGTTGGAAGCGGAAACTTCG
TCCAGCACCACCACTACAACAGCGGCAACCTGCACAACGACATCTCCCTG
ATCCGCACCCCGCACGTCGACTTCTGGCACCTGGTCAACAAGGTGGAGTT
GCCCAGCTACAACGACCGCTACCAGGACTACGCCGGATGGTGGGCCGTGG
CCTCCGGATGGGGCGGCACCTACGATGGCAGCCCACTGCCCGACTGGCTC
CAGGCTGTCGATGTCCAGATTCATGTCCCAGAGTGATTGCAGCCGCTCGT
GGGTCTCTCCACGACAACATGATTTGCATCAACACCAACGGCGGAAAGTC
CACCTGCGGAGGTGACTC
BS13252.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2229-PA | 804 | Jon99Fii-RA | 1..554 | 17..570 | 2770 | 100 | Plus |
CG18030-PA | 804 | Jon99Fi-RA | 1..554 | 17..570 | 2520 | 98.1 | Plus |
CG31034-PA | 798 | Jon99Cii-RA | 329..548 | 351..570 | 925 | 96.8 | Plus |
CG31362-PA | 798 | Jon99Ciii-RA | 329..548 | 351..570 | 925 | 96.8 | Plus |
CG31034-PA | 798 | Jon99Cii-RA | 97..278 | 119..300 | 760 | 96.7 | Plus |
CG31362-PA | 798 | Jon99Ciii-RA | 97..278 | 119..300 | 710 | 95.6 | Plus |
CG2229-PA | 804 | Jon99Fii-RA | 584..650 | 602..668 | 335 | 100 | Plus |
CG18030-PA | 804 | Jon99Fi-RA | 584..650 | 602..668 | 335 | 100 | Plus |
CG8869-PA | 831 | Jon25Bii-RA | 119..179 | 120..180 | 230 | 95 | Plus |
CG8869-PA | 831 | Jon25Bii-RA | 378..456 | 376..454 | 220 | 91.1 | Plus |
CG8871-PA | 777 | Jon25Biii-RA | 350..422 | 396..468 | 215 | 91.7 | Plus |
CG8867-PA | 801 | Jon25Bi-RA | 363..450 | 385..472 | 215 | 89.7 | Plus |
CG8867-PB | 801 | Jon25Bi-RB | 363..450 | 385..472 | 215 | 89.7 | Plus |
CG8871-PA | 777 | Jon25Biii-RA | 441..503 | 487..549 | 190 | 92 | Plus |
CG31034-PA | 798 | Jon99Cii-RA | 578..644 | 602..668 | 185 | 91 | Plus |
CG31362-PA | 798 | Jon99Ciii-RA | 578..644 | 602..668 | 185 | 91 | Plus |
CG8579-PA | 816 | Jon44E-RA | 419..459 | 432..472 | 180 | 97.5 | Plus |
CG7118-PA | 783 | Jon66Ci-RA | 364..423 | 413..472 | 175 | 91.6 | Plus |
CG7170-PA | 789 | Jon66Cii-RA | 376..435 | 413..472 | 175 | 91.6 | Plus |
CG2229-PA | 804 | Jon99Fii-RA | 554..585 | 571..602 | 160 | 100 | Plus |
CG8579-PA | 816 | Jon44E-RA | 105..164 | 112..171 | 150 | 90 | Plus |
CG8869-PA | 831 | Jon25Bii-RA | 204..242 | 202..240 | 145 | 94.8 | Plus |
CG31034-PA | 798 | Jon99Cii-RA | 1..38 | 17..54 | 140 | 94.7 | Plus |
CG31362-PA | 798 | Jon99Ciii-RA | 1..38 | 17..54 | 140 | 94.7 | Plus |
CG6580-PA | 780 | Jon65Aii-RA | 332..378 | 381..427 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:06:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon99Fii-RA | 913 | CG2229-RA | 26..675 | 17..668 | 3210 | 99.7 | Plus |
Jon99Fi-RA | 933 | CG18030-RA | 26..675 | 17..668 | 3030 | 97.9 | Plus |
Jon99Cii-RA | 862 | CG31034-RA | 29..672 | 17..668 | 2230 | 89.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30487254..30487903 | 668..17 | 3160 | 99.7 | Minus |
3R | 32079331 | 3R | 30488988..30489637 | 17..668 | 2980 | 97.9 | Plus |
3R | 32079331 | 3R | 29923944..29924587 | 668..17 | 2150 | 89.7 | Minus |
3R | 32079331 | 3R | 29922242..29922885 | 17..668 | 2120 | 89.4 | Plus |
2L | 23513712 | 2L | 4952599..4953001 | 514..115 | 690 | 78.7 | Minus |
2R | 25286936 | 2R | 8691573..8691968 | 112..513 | 605 | 77.9 | Plus |
2L | 23513712 | 2L | 4954674..4955031 | 472..112 | 585 | 78.1 | Minus |
2L | 23513712 | 2L | 4950225..4950403 | 570..392 | 535 | 86.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:06:53 has no hits.
BS13252.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:57 Download gff for
BS13252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2229-PA | 1..650 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:35:00 Download gff for
BS13252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Fii-RA | 26..675 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:26 Download gff for
BS13252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Fii-RA | 26..675 | 17..668 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:26 Download gff for
BS13252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30487254..30487903 | 17..668 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:35:00 Download gff for
BS13252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26312976..26313625 | 17..668 | 99 | | Minus |
BS13252.complete Sequence
836 bp assembled on 2006-11-01
GenBank Submission: FJ637401
> BS13252.complete
GAAGTTATCAGTCGACATGAAACTGTTCGTATTCCTGGCTCTGGCCGTGG
CCGCCGCCACAGCCATTCCTACCCCGGAGCAAAAGTTGGTCCCCACCCCG
GTGAAGGATGTCAAGATCCAGGGTCGCATTACCAACGGCTACCCAGCCTA
CGAGGGCAAGGTACCCTACATCGTGGGTCTCCTTTTCAGTGGCAATGGAA
ACTGGTGGTGCGGTGGCTCGATCATCGGCAACACCTGGGTCCTGACCGCC
GCCCACTGCACCAACGGAGCCAGTGGAGTGACCATCAACTACGGAGCCAG
TCTGCGCAACCAGCCCCAGTACACCCACTGGGTTGGAAGCGGAAACTTCG
TCCAGCACCACCACTACAACAGCGGCAACCTGCACAACGACATCTCCCTG
ATCCGCACCCCGCACGTCGACTTCTGGCACCTGGTCAACAAGGTGGAGTT
GCCCAGCTACAACGACCGCTACCAGGACTACGCCGGATGGTGGGCCGTGG
CCTCCGGATGGGGCGGCACCTACGATGGCAGCCCACTGCCCGACTGGCTC
CAGGCTGTCGATGTCCAGATCATGTCCCAGAGTGATTGCAGCCGCTCGTG
GTCTCTCCACGACAACATGATTTGCATCAACACCAACGGCGGAAAGTCCA
CCTGCGGAGGTGACTCCGGTGGTCCCCTGGTCACACACGAGGGCAACCGC
CTGGTCGGAGTAACCTCCTTCGTTTCCTCCGCCGGCTGCCAGTCTGGTGC
TCCCGCTGTCTTCAGCCGTGTCACCGGATACTTGGACTGGATCCGCGACA
ACACCGGCATCTCGTACTAAAAGCTTTCTAGACCAT
BS13252.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon99Fii-RA | 804 | CG2229-PA | 1..804 | 17..820 | 4020 | 100 | Plus |
Jon99Fi-RA | 804 | CG18030-PA | 1..804 | 17..820 | 3795 | 98.1 | Plus |
Jon99Cii-RA | 798 | CG31034-PA | 1..798 | 17..820 | 2815 | 90.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon99Fii-RA | 913 | CG2229-RA | 26..835 | 17..826 | 4035 | 99.9 | Plus |
Jon99Fi-RA | 933 | CG18030-RA | 26..829 | 17..820 | 3795 | 98.1 | Plus |
Jon99Cii-RA | 862 | CG31034-RA | 29..826 | 17..820 | 2815 | 90.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30487094..30487903 | 826..17 | 4035 | 99.9 | Minus |
3R | 32079331 | 3R | 30488988..30489791 | 17..820 | 3795 | 98.1 | Plus |
3R | 32079331 | 3R | 29923790..29924587 | 820..17 | 2815 | 90.3 | Minus |
3R | 32079331 | 3R | 29922242..29923039 | 17..820 | 2770 | 89.9 | Plus |
2L | 23513712 | 2L | 4949972..4950403 | 820..392 | 700 | 78 | Minus |
2L | 23513712 | 2L | 4952599..4953001 | 514..115 | 690 | 78.7 | Minus |
2R | 25286936 | 2R | 8691573..8691968 | 112..513 | 605 | 77.9 | Plus |
2L | 23513712 | 2L | 4954674..4955031 | 472..112 | 585 | 78.1 | Minus |
3L | 28110227 | 3L | 8392871..8393288 | 810..396 | 540 | 75.8 | Minus |
3L | 28110227 | 3L | 8391897..8392081 | 389..573 | 505 | 84.9 | Plus |
3L | 28110227 | 3L | 6052735..6052876 | 373..514 | 320 | 81.7 | Plus |
3L | 28110227 | 3L | 6053924..6054062 | 527..389 | 290 | 80.6 | Minus |
3L | 28110227 | 3L | 8391650..8391878 | 112..349 | 280 | 76.5 | Plus |
2L | 23513712 | 2L | 4952284..4952494 | 820..610 | 275 | 75.4 | Minus |
2R | 25286936 | 2R | 8692074..8692274 | 610..810 | 255 | 75.1 | Plus |
3L | 28110227 | 3L | 6053626..6053799 | 822..649 | 240 | 75.9 | Minus |
2L | 23513712 | 2L | 4954338..4954509 | 808..637 | 215 | 75 | Minus |
3L | 28110227 | 3L | 8392166..8392327 | 649..810 | 210 | 75.3 | Plus |
3L | 28110227 | 3L | 6051545..6051660 | 705..820 | 190 | 77.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:32:27 has no hits.
BS13252.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:58 Download gff for
BS13252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Fii-RA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:46 Download gff for
BS13252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Fii-RA | 24..833 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:28 Download gff for
BS13252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Fii-RA | 26..827 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:58 Download gff for
BS13252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Fii-RA | 24..833 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:31 Download gff for
BS13252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Fii-RA | 26..827 | 17..818 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:31 Download gff for
BS13252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30487102..30487903 | 17..818 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:28 Download gff for
BS13252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26312824..26313625 | 17..818 | 100 | | Minus |
BS13252.pep Sequence
Translation from 16 to 819
> BS13252.pep
MKLFVFLALAVAAATAIPTPEQKLVPTPVKDVKIQGRITNGYPAYEGKVP
YIVGLLFSGNGNWWCGGSIIGNTWVLTAAHCTNGASGVTINYGASLRNQP
QYTHWVGSGNFVQHHHYNSGNLHNDISLIRTPHVDFWHLVNKVELPSYND
RYQDYAGWWAVASGWGGTYDGSPLPDWLQAVDVQIMSQSDCSRSWSLHDN
MICINTNGGKSTCGGDSGGPLVTHEGNRLVGVTSFVSSAGCQSGAPAVFS
RVTGYLDWIRDNTGISY*
BS13252.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon99Fii-PA | 267 | CG2229-PA | 1..267 | 1..267 | 1479 | 100 | Plus |
Jon99Fi-PA | 267 | CG18030-PA | 1..267 | 1..267 | 1470 | 99.3 | Plus |
Jon99Ciii-PB | 265 | CG31362-PB | 1..265 | 1..267 | 1383 | 92.5 | Plus |
Jon99Ciii-PA | 265 | CG31362-PA | 1..265 | 1..267 | 1383 | 92.5 | Plus |
Jon99Cii-PA | 265 | CG31034-PA | 1..265 | 1..267 | 1383 | 92.5 | Plus |