Clone BS13252 Report

Search the DGRC for BS13252

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptJon99Fii-RA
Protein status:BS13252.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13252.3prime Sequence

644 bp (581 high quality bases) assembled on 2006-10-13

> BS13252.3prime
ATGGTCTAGAAAGCTTTTAGTACGAGATGCCGGTGTTGTCGCGGATCCAG
TCCAAGTATCCGGTGACACGGCTGAAGACAGCGGGAGCACCAGACTGGCA
GCCGGCGGAGGAAACGAAGGAGGTTACTCCGACCAGGCGGTTGCCCTCGT
GTGTGACCAGGGGACCACCGGAGTCACCTCCGCAGGTGGACTTTCCGCCG
TTGGTGTTGATGCAAATCATGTTGTCGTGGAGAGACCACGAGCGGCTGCA
ATCACTCTGGGACATGATCTGGACATCGACAGCCTGGAGCCAGTCGGGCA
GTGGGCTGCCATCGTAGGTGCCGCCCCATCCGGAGGCCACGGCCCACCAT
CCGGCGTAGTCCTGGTAGCGGTCGTTGTAGCTGGGCAACTCCACCTTGTT
GACCAGGTGCCAGAAGTCGACGTGCGGGGTGCGGATCAGGGAGATGTCGT
TGTGCAGGTTGCCGCTGTTGTAGTGGTGGTGCTGGACGAAGTTTCCGCTT
CCAACCCAGTGGGTGTACTGGGGCTGGTTGCGCAGACTGGCTCCGTAGTT
GATGGTCACTCCACTGGCTCCGTTGGTGCAGTGAGCGGCGGTCAAGACCC
AGGTGTTGCCGATGATCGAGCCACCGCACCACCAGTTTCCATTG

BS13252.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2229-PA 804 Jon99Fii-RA 177..804 644..17 3090 99.6 Minus
CG18030-PA 804 Jon99Fi-RA 177..804 644..17 2890 98.4 Minus
CG31034-PA 798 Jon99Cii-RA 329..798 486..17 1600 93.6 Minus
CG31362-PA 798 Jon99Ciii-RA 329..798 486..17 1575 93.4 Minus
CG31362-PA 798 Jon99Ciii-RA 175..278 640..537 495 99 Minus
CG31034-PA 798 Jon99Cii-RA 175..278 640..537 470 98 Minus
CG8869-PA 831 Jon25Bii-RA 378..456 461..383 220 91.1 Minus
CG8871-PA 777 Jon25Biii-RA 350..422 441..369 215 91.7 Minus
CG8867-PA 801 Jon25Bi-RA 363..450 452..365 215 89.7 Minus
CG8867-PB 801 Jon25Bi-RB 363..450 452..365 215 89.7 Minus
CG8871-PA 777 Jon25Biii-RA 441..503 350..288 190 92 Minus
CG8579-PA 816 Jon44E-RA 419..459 405..365 180 97.5 Minus
CG7118-PA 783 Jon66Ci-RA 364..423 424..365 175 91.6 Minus
CG7170-PA 789 Jon66Cii-RA 376..435 424..365 175 91.6 Minus
CG8579-PA 816 Jon44E-RA 763..806 70..27 170 95.4 Minus
CG8579-PA 816 Jon44E-RA 619..678 214..155 150 90 Minus
CG8869-PA 831 Jon25Bii-RA 204..242 635..597 145 94.8 Minus
CG18180-PA 795 CG18180-RA 634..671 184..147 140 94.7 Minus
CG6580-PA 780 Jon65Aii-RA 332..378 456..410 135 91.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Jon99Fii-RA 913 CG2229-RA 202..835 644..11 3125 99.5 Minus
Jon99Fi-RA 933 CG18030-RA 202..829 644..17 2990 98.4 Minus
Jon99Ciii-RB 1240 CG31362-RB 197..824 644..17 2480 93 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30487094..30487727 11..644 3125 99.5 Plus
3R 32079331 3R 30489164..30489791 644..17 2990 98.4 Minus
3R 32079331 3R 29922412..29923039 644..17 2480 93 Minus
3R 32079331 3R 29923790..29924417 17..644 2480 93 Plus
2L 23513712 2L 4949972..4950403 17..445 700 78 Plus
3L 28110227 3L 8392871..8393288 27..441 540 75.8 Plus
2L 23513712 2L 4952599..4952911 323..635 530 78 Plus
2L 23513712 2L 4954674..4954941 365..635 435 78.2 Plus
2L 23513712 2L 4952284..4952494 17..227 275 75.4 Plus
2L 23513712 2L 4954338..4954509 29..200 215 75 Plus
Blast to na_te.dros performed on 2015-02-12 11:25:31 has no hits.

BS13252.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:57 Download gff for BS13252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2229-PA 177..804 17..644 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:52 Download gff for BS13252.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon99Fii-RA 202..835 11..644 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:37:02 Download gff for BS13252.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon99Fii-RA 202..835 11..644 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:37:02 Download gff for BS13252.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30487094..30487727 11..644 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:52 Download gff for BS13252.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26312816..26313449 11..644 99   Plus

BS13252.5prime Sequence

668 bp (646 high quality bases) assembled on 2006-10-13

> BS13252.5prime
GAAGTTATCAGTCGACATGAAACTGTTCGTATTCCTGGCTCTGGCCGTGG
CCGCCGCCACAGCCATTCCTACCCCGGAGCAAAAGTTGGTCCCCACCCCG
GTGAAGGATGTCAAGATCCAGGGTCGCATTACCAACGGCTACCCAGCCTA
CGAGGGCAAGGTACCCTACATCGTGGGTCTCCTTTTCAGTGGCAATGGAA
ACTGGTGGTGCGGTGGCTCGATCATCGGCAACACCTGGGTCCTGACCGCC
GCCCACTGCACCAACGGAGCCAGTGGAGTGACCATCAACTACGGAGCCAG
TCTGCGCAACCAGCCCCAGTACACCCACTGGGTTGGAAGCGGAAACTTCG
TCCAGCACCACCACTACAACAGCGGCAACCTGCACAACGACATCTCCCTG
ATCCGCACCCCGCACGTCGACTTCTGGCACCTGGTCAACAAGGTGGAGTT
GCCCAGCTACAACGACCGCTACCAGGACTACGCCGGATGGTGGGCCGTGG
CCTCCGGATGGGGCGGCACCTACGATGGCAGCCCACTGCCCGACTGGCTC
CAGGCTGTCGATGTCCAGATTCATGTCCCAGAGTGATTGCAGCCGCTCGT
GGGTCTCTCCACGACAACATGATTTGCATCAACACCAACGGCGGAAAGTC
CACCTGCGGAGGTGACTC

BS13252.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2229-PA 804 Jon99Fii-RA 1..554 17..570 2770 100 Plus
CG18030-PA 804 Jon99Fi-RA 1..554 17..570 2520 98.1 Plus
CG31034-PA 798 Jon99Cii-RA 329..548 351..570 925 96.8 Plus
CG31362-PA 798 Jon99Ciii-RA 329..548 351..570 925 96.8 Plus
CG31034-PA 798 Jon99Cii-RA 97..278 119..300 760 96.7 Plus
CG31362-PA 798 Jon99Ciii-RA 97..278 119..300 710 95.6 Plus
CG2229-PA 804 Jon99Fii-RA 584..650 602..668 335 100 Plus
CG18030-PA 804 Jon99Fi-RA 584..650 602..668 335 100 Plus
CG8869-PA 831 Jon25Bii-RA 119..179 120..180 230 95 Plus
CG8869-PA 831 Jon25Bii-RA 378..456 376..454 220 91.1 Plus
CG8871-PA 777 Jon25Biii-RA 350..422 396..468 215 91.7 Plus
CG8867-PA 801 Jon25Bi-RA 363..450 385..472 215 89.7 Plus
CG8867-PB 801 Jon25Bi-RB 363..450 385..472 215 89.7 Plus
CG8871-PA 777 Jon25Biii-RA 441..503 487..549 190 92 Plus
CG31034-PA 798 Jon99Cii-RA 578..644 602..668 185 91 Plus
CG31362-PA 798 Jon99Ciii-RA 578..644 602..668 185 91 Plus
CG8579-PA 816 Jon44E-RA 419..459 432..472 180 97.5 Plus
CG7118-PA 783 Jon66Ci-RA 364..423 413..472 175 91.6 Plus
CG7170-PA 789 Jon66Cii-RA 376..435 413..472 175 91.6 Plus
CG2229-PA 804 Jon99Fii-RA 554..585 571..602 160 100 Plus
CG8579-PA 816 Jon44E-RA 105..164 112..171 150 90 Plus
CG8869-PA 831 Jon25Bii-RA 204..242 202..240 145 94.8 Plus
CG31034-PA 798 Jon99Cii-RA 1..38 17..54 140 94.7 Plus
CG31362-PA 798 Jon99Ciii-RA 1..38 17..54 140 94.7 Plus
CG6580-PA 780 Jon65Aii-RA 332..378 381..427 135 91.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Jon99Fii-RA 913 CG2229-RA 26..675 17..668 3210 99.7 Plus
Jon99Fi-RA 933 CG18030-RA 26..675 17..668 3030 97.9 Plus
Jon99Cii-RA 862 CG31034-RA 29..672 17..668 2230 89.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30487254..30487903 668..17 3160 99.7 Minus
3R 32079331 3R 30488988..30489637 17..668 2980 97.9 Plus
3R 32079331 3R 29923944..29924587 668..17 2150 89.7 Minus
3R 32079331 3R 29922242..29922885 17..668 2120 89.4 Plus
2L 23513712 2L 4952599..4953001 514..115 690 78.7 Minus
2R 25286936 2R 8691573..8691968 112..513 605 77.9 Plus
2L 23513712 2L 4954674..4955031 472..112 585 78.1 Minus
2L 23513712 2L 4950225..4950403 570..392 535 86.6 Minus
Blast to na_te.dros performed on 2015-02-12 04:06:53 has no hits.

BS13252.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:57 Download gff for BS13252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2229-PA 1..650 17..668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:35:00 Download gff for BS13252.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon99Fii-RA 26..675 17..668 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:26 Download gff for BS13252.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon99Fii-RA 26..675 17..668 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:26 Download gff for BS13252.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30487254..30487903 17..668 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:35:00 Download gff for BS13252.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26312976..26313625 17..668 99   Minus

BS13252.complete Sequence

836 bp assembled on 2006-11-01

GenBank Submission: FJ637401

> BS13252.complete
GAAGTTATCAGTCGACATGAAACTGTTCGTATTCCTGGCTCTGGCCGTGG
CCGCCGCCACAGCCATTCCTACCCCGGAGCAAAAGTTGGTCCCCACCCCG
GTGAAGGATGTCAAGATCCAGGGTCGCATTACCAACGGCTACCCAGCCTA
CGAGGGCAAGGTACCCTACATCGTGGGTCTCCTTTTCAGTGGCAATGGAA
ACTGGTGGTGCGGTGGCTCGATCATCGGCAACACCTGGGTCCTGACCGCC
GCCCACTGCACCAACGGAGCCAGTGGAGTGACCATCAACTACGGAGCCAG
TCTGCGCAACCAGCCCCAGTACACCCACTGGGTTGGAAGCGGAAACTTCG
TCCAGCACCACCACTACAACAGCGGCAACCTGCACAACGACATCTCCCTG
ATCCGCACCCCGCACGTCGACTTCTGGCACCTGGTCAACAAGGTGGAGTT
GCCCAGCTACAACGACCGCTACCAGGACTACGCCGGATGGTGGGCCGTGG
CCTCCGGATGGGGCGGCACCTACGATGGCAGCCCACTGCCCGACTGGCTC
CAGGCTGTCGATGTCCAGATCATGTCCCAGAGTGATTGCAGCCGCTCGTG
GTCTCTCCACGACAACATGATTTGCATCAACACCAACGGCGGAAAGTCCA
CCTGCGGAGGTGACTCCGGTGGTCCCCTGGTCACACACGAGGGCAACCGC
CTGGTCGGAGTAACCTCCTTCGTTTCCTCCGCCGGCTGCCAGTCTGGTGC
TCCCGCTGTCTTCAGCCGTGTCACCGGATACTTGGACTGGATCCGCGACA
ACACCGGCATCTCGTACTAAAAGCTTTCTAGACCAT

BS13252.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
Jon99Fii-RA 804 CG2229-PA 1..804 17..820 4020 100 Plus
Jon99Fi-RA 804 CG18030-PA 1..804 17..820 3795 98.1 Plus
Jon99Cii-RA 798 CG31034-PA 1..798 17..820 2815 90.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
Jon99Fii-RA 913 CG2229-RA 26..835 17..826 4035 99.9 Plus
Jon99Fi-RA 933 CG18030-RA 26..829 17..820 3795 98.1 Plus
Jon99Cii-RA 862 CG31034-RA 29..826 17..820 2815 90.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30487094..30487903 826..17 4035 99.9 Minus
3R 32079331 3R 30488988..30489791 17..820 3795 98.1 Plus
3R 32079331 3R 29923790..29924587 820..17 2815 90.3 Minus
3R 32079331 3R 29922242..29923039 17..820 2770 89.9 Plus
2L 23513712 2L 4949972..4950403 820..392 700 78 Minus
2L 23513712 2L 4952599..4953001 514..115 690 78.7 Minus
2R 25286936 2R 8691573..8691968 112..513 605 77.9 Plus
2L 23513712 2L 4954674..4955031 472..112 585 78.1 Minus
3L 28110227 3L 8392871..8393288 810..396 540 75.8 Minus
3L 28110227 3L 8391897..8392081 389..573 505 84.9 Plus
3L 28110227 3L 6052735..6052876 373..514 320 81.7 Plus
3L 28110227 3L 6053924..6054062 527..389 290 80.6 Minus
3L 28110227 3L 8391650..8391878 112..349 280 76.5 Plus
2L 23513712 2L 4952284..4952494 820..610 275 75.4 Minus
2R 25286936 2R 8692074..8692274 610..810 255 75.1 Plus
3L 28110227 3L 6053626..6053799 822..649 240 75.9 Minus
2L 23513712 2L 4954338..4954509 808..637 215 75 Minus
3L 28110227 3L 8392166..8392327 649..810 210 75.3 Plus
3L 28110227 3L 6051545..6051660 705..820 190 77.6 Plus
Blast to na_te.dros performed on 2014-11-26 16:32:27 has no hits.

BS13252.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:58 Download gff for BS13252.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Fii-RA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:46 Download gff for BS13252.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Fii-RA 24..833 17..826 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:28 Download gff for BS13252.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Fii-RA 26..827 17..818 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:58 Download gff for BS13252.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Fii-RA 24..833 17..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:31 Download gff for BS13252.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Fii-RA 26..827 17..818 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:31 Download gff for BS13252.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30487102..30487903 17..818 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:28 Download gff for BS13252.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26312824..26313625 17..818 100   Minus

BS13252.pep Sequence

Translation from 16 to 819

> BS13252.pep
MKLFVFLALAVAAATAIPTPEQKLVPTPVKDVKIQGRITNGYPAYEGKVP
YIVGLLFSGNGNWWCGGSIIGNTWVLTAAHCTNGASGVTINYGASLRNQP
QYTHWVGSGNFVQHHHYNSGNLHNDISLIRTPHVDFWHLVNKVELPSYND
RYQDYAGWWAVASGWGGTYDGSPLPDWLQAVDVQIMSQSDCSRSWSLHDN
MICINTNGGKSTCGGDSGGPLVTHEGNRLVGVTSFVSSAGCQSGAPAVFS
RVTGYLDWIRDNTGISY*

BS13252.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
Jon99Fii-PA 267 CG2229-PA 1..267 1..267 1479 100 Plus
Jon99Fi-PA 267 CG18030-PA 1..267 1..267 1470 99.3 Plus
Jon99Ciii-PB 265 CG31362-PB 1..265 1..267 1383 92.5 Plus
Jon99Ciii-PA 265 CG31362-PA 1..265 1..267 1383 92.5 Plus
Jon99Cii-PA 265 CG31034-PA 1..265 1..267 1383 92.5 Plus