Clone Sequence Records
BS13253.3prime Sequence
739 bp (606 high quality bases) assembled on 2006-10-13
> BS13253.3prime
ATGGTCTAGAAAGCTTCTAGGGATTTGCCACTTCCGTTGGTGCATCGTGC
GGCTCATCCTTGATATGCACATCATCGTCCTCCTGGTCCTCTTTACTGTT
TTCGTGGAGCAGAACATACTCGCGCGAACTAAATCCGAACTTGATGACGT
CCTTCTCTATAAGCTCGTAGTACTTCCTGGCATCGATCTTCTTGTTGTTG
AGAAACGTTCCGTTTGCCGAATCCAGATCGATAAGGTACAATCGCACGCG
TTTTCCGTGACTACCATCTTCCCGCTCGAAGGGCACCAGTCGATATTGCA
GGGCTGCGTGTTGTTTGGAGCAACTAGGATGATCCACTGCCAGATCGACC
ACTTTTCGATCGCGTCCAACCAGAAAGCAACTCTGCCGATGAATATGGAG
CGTGGGCAATGCTGTTTCGCCCTTGAACGGGTACAATCTCCAGCGCCGTT
TGGGCTTGCGTGCCTCCGGGGGCTCAGAGTATTTAACCACCACACCGTTT
AACTTATTAGTGTCCTCTGTTAACGCGCCACTTAGTCCGAAGTTGGGCTT
TTCCTTGTCCACCGGCACGTCGTTCTCGGCTGGCACTTTTTCGTCGACTT
CCTTTCCCCAGACGTAGTGATCATCCTCATTCTTGTTGCTGTTGTTGTGA
CGCTGATTTCGTTGGGGTCTCTGGTCAAGATCCCGCCCGCCGTGGCACCG
ATCTCGTGGACTTTTACTACGGCGAAACCGGGCGCCCTT
BS13253.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:36:06 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:47:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17168-RA | 1516 | CG17168-RA | 654..1373 | 736..16 | 3550 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23083726..23084433 | 723..16 | 3510 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:47:39 has no hits.
BS13253.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:38 Download gff for
BS13253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17168-RA | 651..1380 | 10..739 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:36 Download gff for
BS13253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17168-RA | 651..1380 | 10..739 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:36 Download gff for
BS13253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23083726..23084440 | 10..723 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:38 Download gff for
BS13253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
XHet | 62544..63258 | 10..723 | 99 | | Minus |
BS13253.5prime Sequence
664 bp (593 high quality bases) assembled on 2006-10-13
> BS13253.5prime
GAAGTTATCAGTCGACATGAGCAAGCAACGCAACAAGGAGCATGAACTGG
AACAGCAACGCACCGGTCACGAGGGGGACACTAAAATGAGCGACCGCAAC
TTATCCAAAACGAAGAAGATTAAGCAAAGGGCGACCGCCGATTCCTCTAG
TTCATCAGATTCCTCCAATGAAAGCAAAAAATCTAATCACAGCTCCCTGT
CGCCTAACAGAAAGCAGCGGACAGCCGGTAAGCGACAAAGAGACTCCTCT
CAATCGCAGGAGAAACGCCACAAGCAGTTAACACATCCGTCGGAGGACGT
ACATGAACAGCGCTCTAAGTGGGACAGTCCGGAACGCAGCAACTCCCATC
GCAACAGTACAAGGCAGCGCCGGAACACTCGGAGTCGCTCAAGGGAGCGT
AGCGAGAGAGAACGGGATAGGGATTGTGAGCGAAACAAAGAGCGGGACTA
TAACATGCAATCCAGCAAGGAGCGCTGGCAGCGTTCGCCTGCTCTGCGGC
ATCGTTCAAGGAGCAGCGAACGCAAAAATAGGGAGCGTGATCGCCAGCGG
AGGCCTACTGAAAGGCGCCCGGTTCGCCGTAGTCAAAGTCCACGAGATCG
GTGCCACGGCGGGCGGGATCTTGACCAGAGACGCCAACGAAATCAGCGTC
ACAACAACAGCAAC
BS13253.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:36:07 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17168-RA | 1516 | CG17168-RA | 107..754 | 17..664 | 3240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:57:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23082844..23083403 | 17..576 | 2800 | 100 | Plus |
X | 23542271 | X | 23083726..23083814 | 576..664 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:57:36 has no hits.
BS13253.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:42 Download gff for
BS13253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17168-RA | 102..754 | 11..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:55 Download gff for
BS13253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17168-RA | 102..754 | 11..664 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:55 Download gff for
BS13253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23082839..23083403 | 11..576 | 99 | -> | Plus |
X | 23083727..23083814 | 577..664 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:42 Download gff for
BS13253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
XHet | 61657..62221 | 11..576 | 99 | -> | Plus |
XHet | 62545..62632 | 577..664 | 100 | | Plus |
BS13253.complete Sequence
1298 bp assembled on 2006-11-01
GenBank Submission: FJ637402
> BS13253.complete
GAAGTTATCAGTCGACATGAGCAAGCAACGCAACAAGGAGCATGAACTGG
AACAGCAACGCACCGGTCACGAGGGGGACACTAAAATGAGCGACCGCAAC
TTATCCAAAACGAAGAAGATTAAGCAAAGGGCGACCGCCGATTCCTCTAG
TTCATCAGATTCCTCCAATGAAAGCAAAAAATCTAATCACAGCTCCCTGT
CGCCTAACAGAAAGCAGCGGACAGCCGGTAAGCGACAAAGAGACTCCTCT
CAATCGCAGGAGAAACGCCACAAGCAGTTAACACATCCGTCGGAGGACGT
ACATGAACAGCGCTCTAAGTGGGACAGTCCGGAACGCAGCAACTCCCATC
GCAACAGTACAAGGCAGCGCCGGAACACTCGGAGTCGCTCAAGGGAGCGT
AGCGAGAGAGAACGGGATAGGGATTGTGAGCGAAACAAAGAGCGGGACTA
TAACATGCAATCCAGCAAGGAGCGCTGGCAGCGTTCGCCTGCTCTGCGGC
ATCGTTCAAGGAGCAGCGAACGCAAAAATAGGGAGCGTGATCGCCAGCGG
AGGCCTACTGAAAGGCGCCCGGTTCGCCGTAGTCAAAGTCCACGAGATCG
GTGCCACGGCGGGCGGGATCTTGACCAGAGACGCCAACGAAATCAGCGTC
ACAACAACAGCAACAAGAATGAGGATGATCACTACGTCTGGGGAAAGGAA
GTCGACGAAAAAGTGCCAGCCGAGAACGACGTGCCGGTGGACAAGGAAAA
GCCCAACTTCGGACTAAGTGGCGCGTTAACAGAGGACACTAATAAGTTAA
ACGGTGTGGTGGTTAAATACTCTGAGCCCCCGGAGGCACGCAAGCCCAAA
CGGCGCTGGAGATTGTACCCGTTCAAGGGCGAAACAGCATTGCCCACGCT
CCATATTCATCGGCAGAGTTGCTTTCTGGTTGGACGCGATCGAAAAGTGG
TCGATCTGGCAGTGGATCATCCTAGTTGCTCCAAACAACACGCAGCCCTG
CAATATCGACTGGTGCCCTTCGAGCGGGAAGATGGTAGTCACGGAAAACG
CGTGCGATTGTACCTTATCGATCTGGATTCGGCAAACGGAACGTTTCTCA
ACAACAAGAAGATCGATGCCAGGAAGTACTACGAGCTTATAGAGAAGGAC
GTCATCAAGTTCGGATTTAGTTCGCGCGAGTATGTTCTGCTCCACGAAAA
CAGTAAAGAGGACCAGGAGGACGATGATGTGCATATCAAGGATGAGCCGC
ACGATGCACCAACGGAAGTGGCAAATCCCTAGAAGCTTTCTAGACCAT
BS13253.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17168-RA | 1266 | CG17168-PA | 1..1266 | 17..1282 | 6330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17168-RA | 1516 | CG17168-RA | 107..1373 | 17..1283 | 6335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23083726..23084433 | 576..1283 | 3540 | 100 | Plus |
X | 23542271 | X | 23082844..23083403 | 17..576 | 2800 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:53:37 has no hits.
BS13253.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:00 Download gff for
BS13253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17168-RA | 1..1266 | 17..1282 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:48 Download gff for
BS13253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17168-RA | 73..1351 | 11..1289 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:53 Download gff for
BS13253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17168-RA | 107..1372 | 17..1282 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:00 Download gff for
BS13253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17168-RA | 73..1351 | 11..1289 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:22 Download gff for
BS13253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17168-RA | 107..1372 | 17..1282 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:22 Download gff for
BS13253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23082844..23083403 | 17..576 | 100 | -> | Plus |
X | 23083727..23084432 | 577..1282 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:53 Download gff for
BS13253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
XHet | 61662..62221 | 17..576 | 100 | -> | Plus |
XHet | 62545..63250 | 577..1282 | 100 | | Plus |
BS13253.pep Sequence
Translation from 16 to 1281
> BS13253.pep
MSKQRNKEHELEQQRTGHEGDTKMSDRNLSKTKKIKQRATADSSSSSDSS
NESKKSNHSSLSPNRKQRTAGKRQRDSSQSQEKRHKQLTHPSEDVHEQRS
KWDSPERSNSHRNSTRQRRNTRSRSRERSERERDRDCERNKERDYNMQSS
KERWQRSPALRHRSRSSERKNRERDRQRRPTERRPVRRSQSPRDRCHGGR
DLDQRRQRNQRHNNSNKNEDDHYVWGKEVDEKVPAENDVPVDKEKPNFGL
SGALTEDTNKLNGVVVKYSEPPEARKPKRRWRLYPFKGETALPTLHIHRQ
SCFLVGRDRKVVDLAVDHPSCSKQHAALQYRLVPFEREDGSHGKRVRLYL
IDLDSANGTFLNNKKIDARKYYELIEKDVIKFGFSSREYVLLHENSKEDQ
EDDDVHIKDEPHDAPTEVANP*
BS13253.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17168-PA | 421 | CG17168-PA | 1..421 | 1..421 | 2230 | 100 | Plus |
CG7971-PG | 1062 | CG7971-PG | 438..690 | 3..246 | 205 | 30.9 | Plus |
CG7971-PA | 1062 | CG7971-PA | 438..690 | 3..246 | 205 | 30.9 | Plus |
CG7971-PC | 1107 | CG7971-PC | 438..690 | 3..246 | 205 | 30.9 | Plus |
CG7971-PF | 1655 | CG7971-PF | 663..915 | 3..246 | 205 | 30.9 | Plus |
CG7971-PG | 1062 | CG7971-PG | 330..545 | 2..219 | 194 | 25.1 | Plus |
CG7971-PA | 1062 | CG7971-PA | 330..545 | 2..219 | 194 | 25.1 | Plus |
CG7971-PC | 1107 | CG7971-PC | 330..545 | 2..219 | 194 | 25.1 | Plus |
CG7971-PG | 1062 | CG7971-PG | 422..627 | 3..217 | 186 | 26.9 | Plus |
CG7971-PA | 1062 | CG7971-PA | 422..627 | 3..217 | 186 | 26.9 | Plus |
CG7971-PC | 1107 | CG7971-PC | 422..627 | 3..217 | 186 | 26.9 | Plus |
CG7971-PG | 1062 | CG7971-PG | 230..472 | 3..210 | 183 | 25.5 | Plus |
CG7971-PA | 1062 | CG7971-PA | 230..472 | 3..210 | 183 | 25.5 | Plus |
CG7971-PC | 1107 | CG7971-PC | 230..472 | 3..210 | 183 | 25.5 | Plus |
CG7971-PG | 1062 | CG7971-PG | 288..532 | 7..247 | 179 | 26.8 | Plus |
CG7971-PA | 1062 | CG7971-PA | 288..532 | 7..247 | 179 | 26.8 | Plus |
CG7971-PC | 1107 | CG7971-PC | 288..532 | 7..247 | 179 | 26.8 | Plus |
CG7971-PG | 1062 | CG7971-PG | 353..557 | 7..219 | 159 | 25.6 | Plus |
CG7971-PA | 1062 | CG7971-PA | 353..557 | 7..219 | 159 | 25.6 | Plus |
CG7971-PC | 1107 | CG7971-PC | 353..557 | 7..219 | 159 | 25.6 | Plus |