Clone BS13253 Report

Search the DGRC for BS13253

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG17168-RA
Protein status:BS13253.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13253.3prime Sequence

739 bp (606 high quality bases) assembled on 2006-10-13

> BS13253.3prime
ATGGTCTAGAAAGCTTCTAGGGATTTGCCACTTCCGTTGGTGCATCGTGC
GGCTCATCCTTGATATGCACATCATCGTCCTCCTGGTCCTCTTTACTGTT
TTCGTGGAGCAGAACATACTCGCGCGAACTAAATCCGAACTTGATGACGT
CCTTCTCTATAAGCTCGTAGTACTTCCTGGCATCGATCTTCTTGTTGTTG
AGAAACGTTCCGTTTGCCGAATCCAGATCGATAAGGTACAATCGCACGCG
TTTTCCGTGACTACCATCTTCCCGCTCGAAGGGCACCAGTCGATATTGCA
GGGCTGCGTGTTGTTTGGAGCAACTAGGATGATCCACTGCCAGATCGACC
ACTTTTCGATCGCGTCCAACCAGAAAGCAACTCTGCCGATGAATATGGAG
CGTGGGCAATGCTGTTTCGCCCTTGAACGGGTACAATCTCCAGCGCCGTT
TGGGCTTGCGTGCCTCCGGGGGCTCAGAGTATTTAACCACCACACCGTTT
AACTTATTAGTGTCCTCTGTTAACGCGCCACTTAGTCCGAAGTTGGGCTT
TTCCTTGTCCACCGGCACGTCGTTCTCGGCTGGCACTTTTTCGTCGACTT
CCTTTCCCCAGACGTAGTGATCATCCTCATTCTTGTTGCTGTTGTTGTGA
CGCTGATTTCGTTGGGGTCTCTGGTCAAGATCCCGCCCGCCGTGGCACCG
ATCTCGTGGACTTTTACTACGGCGAAACCGGGCGCCCTT

BS13253.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:36:06 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17168-RA 1516 CG17168-RA 654..1373 736..16 3550 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23083726..23084433 723..16 3510 99.7 Minus
Blast to na_te.dros performed on 2015-02-11 17:47:39 has no hits.

BS13253.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:38 Download gff for BS13253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17168-RA 651..1380 10..739 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:36 Download gff for BS13253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17168-RA 651..1380 10..739 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:36 Download gff for BS13253.3prime
Subject Subject Range Query Range Percent Splice Strand
X 23083726..23084440 10..723 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:38 Download gff for BS13253.3prime
Subject Subject Range Query Range Percent Splice Strand
XHet 62544..63258 10..723 99   Minus

BS13253.5prime Sequence

664 bp (593 high quality bases) assembled on 2006-10-13

> BS13253.5prime
GAAGTTATCAGTCGACATGAGCAAGCAACGCAACAAGGAGCATGAACTGG
AACAGCAACGCACCGGTCACGAGGGGGACACTAAAATGAGCGACCGCAAC
TTATCCAAAACGAAGAAGATTAAGCAAAGGGCGACCGCCGATTCCTCTAG
TTCATCAGATTCCTCCAATGAAAGCAAAAAATCTAATCACAGCTCCCTGT
CGCCTAACAGAAAGCAGCGGACAGCCGGTAAGCGACAAAGAGACTCCTCT
CAATCGCAGGAGAAACGCCACAAGCAGTTAACACATCCGTCGGAGGACGT
ACATGAACAGCGCTCTAAGTGGGACAGTCCGGAACGCAGCAACTCCCATC
GCAACAGTACAAGGCAGCGCCGGAACACTCGGAGTCGCTCAAGGGAGCGT
AGCGAGAGAGAACGGGATAGGGATTGTGAGCGAAACAAAGAGCGGGACTA
TAACATGCAATCCAGCAAGGAGCGCTGGCAGCGTTCGCCTGCTCTGCGGC
ATCGTTCAAGGAGCAGCGAACGCAAAAATAGGGAGCGTGATCGCCAGCGG
AGGCCTACTGAAAGGCGCCCGGTTCGCCGTAGTCAAAGTCCACGAGATCG
GTGCCACGGCGGGCGGGATCTTGACCAGAGACGCCAACGAAATCAGCGTC
ACAACAACAGCAAC

BS13253.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:36:07 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG17168-RA 1516 CG17168-RA 107..754 17..664 3240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23082844..23083403 17..576 2800 100 Plus
X 23542271 X 23083726..23083814 576..664 445 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:57:36 has no hits.

BS13253.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:42 Download gff for BS13253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17168-RA 102..754 11..664 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:55 Download gff for BS13253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17168-RA 102..754 11..664 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:55 Download gff for BS13253.5prime
Subject Subject Range Query Range Percent Splice Strand
X 23082839..23083403 11..576 99 -> Plus
X 23083727..23083814 577..664 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:42 Download gff for BS13253.5prime
Subject Subject Range Query Range Percent Splice Strand
XHet 61657..62221 11..576 99 -> Plus
XHet 62545..62632 577..664 100   Plus

BS13253.complete Sequence

1298 bp assembled on 2006-11-01

GenBank Submission: FJ637402

> BS13253.complete
GAAGTTATCAGTCGACATGAGCAAGCAACGCAACAAGGAGCATGAACTGG
AACAGCAACGCACCGGTCACGAGGGGGACACTAAAATGAGCGACCGCAAC
TTATCCAAAACGAAGAAGATTAAGCAAAGGGCGACCGCCGATTCCTCTAG
TTCATCAGATTCCTCCAATGAAAGCAAAAAATCTAATCACAGCTCCCTGT
CGCCTAACAGAAAGCAGCGGACAGCCGGTAAGCGACAAAGAGACTCCTCT
CAATCGCAGGAGAAACGCCACAAGCAGTTAACACATCCGTCGGAGGACGT
ACATGAACAGCGCTCTAAGTGGGACAGTCCGGAACGCAGCAACTCCCATC
GCAACAGTACAAGGCAGCGCCGGAACACTCGGAGTCGCTCAAGGGAGCGT
AGCGAGAGAGAACGGGATAGGGATTGTGAGCGAAACAAAGAGCGGGACTA
TAACATGCAATCCAGCAAGGAGCGCTGGCAGCGTTCGCCTGCTCTGCGGC
ATCGTTCAAGGAGCAGCGAACGCAAAAATAGGGAGCGTGATCGCCAGCGG
AGGCCTACTGAAAGGCGCCCGGTTCGCCGTAGTCAAAGTCCACGAGATCG
GTGCCACGGCGGGCGGGATCTTGACCAGAGACGCCAACGAAATCAGCGTC
ACAACAACAGCAACAAGAATGAGGATGATCACTACGTCTGGGGAAAGGAA
GTCGACGAAAAAGTGCCAGCCGAGAACGACGTGCCGGTGGACAAGGAAAA
GCCCAACTTCGGACTAAGTGGCGCGTTAACAGAGGACACTAATAAGTTAA
ACGGTGTGGTGGTTAAATACTCTGAGCCCCCGGAGGCACGCAAGCCCAAA
CGGCGCTGGAGATTGTACCCGTTCAAGGGCGAAACAGCATTGCCCACGCT
CCATATTCATCGGCAGAGTTGCTTTCTGGTTGGACGCGATCGAAAAGTGG
TCGATCTGGCAGTGGATCATCCTAGTTGCTCCAAACAACACGCAGCCCTG
CAATATCGACTGGTGCCCTTCGAGCGGGAAGATGGTAGTCACGGAAAACG
CGTGCGATTGTACCTTATCGATCTGGATTCGGCAAACGGAACGTTTCTCA
ACAACAAGAAGATCGATGCCAGGAAGTACTACGAGCTTATAGAGAAGGAC
GTCATCAAGTTCGGATTTAGTTCGCGCGAGTATGTTCTGCTCCACGAAAA
CAGTAAAGAGGACCAGGAGGACGATGATGTGCATATCAAGGATGAGCCGC
ACGATGCACCAACGGAAGTGGCAAATCCCTAGAAGCTTTCTAGACCAT

BS13253.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG17168-RA 1266 CG17168-PA 1..1266 17..1282 6330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG17168-RA 1516 CG17168-RA 107..1373 17..1283 6335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23083726..23084433 576..1283 3540 100 Plus
X 23542271 X 23082844..23083403 17..576 2800 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:53:37 has no hits.

BS13253.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:00 Download gff for BS13253.complete
Subject Subject Range Query Range Percent Splice Strand
CG17168-RA 1..1266 17..1282 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:48 Download gff for BS13253.complete
Subject Subject Range Query Range Percent Splice Strand
CG17168-RA 73..1351 11..1289 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:53 Download gff for BS13253.complete
Subject Subject Range Query Range Percent Splice Strand
CG17168-RA 107..1372 17..1282 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:00 Download gff for BS13253.complete
Subject Subject Range Query Range Percent Splice Strand
CG17168-RA 73..1351 11..1289 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:22 Download gff for BS13253.complete
Subject Subject Range Query Range Percent Splice Strand
CG17168-RA 107..1372 17..1282 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:22 Download gff for BS13253.complete
Subject Subject Range Query Range Percent Splice Strand
X 23082844..23083403 17..576 100 -> Plus
X 23083727..23084432 577..1282 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:53 Download gff for BS13253.complete
Subject Subject Range Query Range Percent Splice Strand
XHet 61662..62221 17..576 100 -> Plus
XHet 62545..63250 577..1282 100   Plus

BS13253.pep Sequence

Translation from 16 to 1281

> BS13253.pep
MSKQRNKEHELEQQRTGHEGDTKMSDRNLSKTKKIKQRATADSSSSSDSS
NESKKSNHSSLSPNRKQRTAGKRQRDSSQSQEKRHKQLTHPSEDVHEQRS
KWDSPERSNSHRNSTRQRRNTRSRSRERSERERDRDCERNKERDYNMQSS
KERWQRSPALRHRSRSSERKNRERDRQRRPTERRPVRRSQSPRDRCHGGR
DLDQRRQRNQRHNNSNKNEDDHYVWGKEVDEKVPAENDVPVDKEKPNFGL
SGALTEDTNKLNGVVVKYSEPPEARKPKRRWRLYPFKGETALPTLHIHRQ
SCFLVGRDRKVVDLAVDHPSCSKQHAALQYRLVPFEREDGSHGKRVRLYL
IDLDSANGTFLNNKKIDARKYYELIEKDVIKFGFSSREYVLLHENSKEDQ
EDDDVHIKDEPHDAPTEVANP*

BS13253.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17168-PA 421 CG17168-PA 1..421 1..421 2230 100 Plus
CG7971-PG 1062 CG7971-PG 438..690 3..246 205 30.9 Plus
CG7971-PA 1062 CG7971-PA 438..690 3..246 205 30.9 Plus
CG7971-PC 1107 CG7971-PC 438..690 3..246 205 30.9 Plus
CG7971-PF 1655 CG7971-PF 663..915 3..246 205 30.9 Plus
CG7971-PG 1062 CG7971-PG 330..545 2..219 194 25.1 Plus
CG7971-PA 1062 CG7971-PA 330..545 2..219 194 25.1 Plus
CG7971-PC 1107 CG7971-PC 330..545 2..219 194 25.1 Plus
CG7971-PG 1062 CG7971-PG 422..627 3..217 186 26.9 Plus
CG7971-PA 1062 CG7971-PA 422..627 3..217 186 26.9 Plus
CG7971-PC 1107 CG7971-PC 422..627 3..217 186 26.9 Plus
CG7971-PG 1062 CG7971-PG 230..472 3..210 183 25.5 Plus
CG7971-PA 1062 CG7971-PA 230..472 3..210 183 25.5 Plus
CG7971-PC 1107 CG7971-PC 230..472 3..210 183 25.5 Plus
CG7971-PG 1062 CG7971-PG 288..532 7..247 179 26.8 Plus
CG7971-PA 1062 CG7971-PA 288..532 7..247 179 26.8 Plus
CG7971-PC 1107 CG7971-PC 288..532 7..247 179 26.8 Plus
CG7971-PG 1062 CG7971-PG 353..557 7..219 159 25.6 Plus
CG7971-PA 1062 CG7971-PA 353..557 7..219 159 25.6 Plus
CG7971-PC 1107 CG7971-PC 353..557 7..219 159 25.6 Plus