Clone Sequence Records
BS13254.3prime Sequence
557 bp (515 high quality bases) assembled on 2006-10-13
> BS13254.3prime
ATGGTCTAGAAAGCTTTTACAGAAAGTCGATTTTGCCCACACTCTCTTTA
TCCGCAACGGTCTCCACCAGCCAATCGAGAACATCCGGTACGGAGCAATA
GACTCCGGGATATTTCTCACGGGCACAGCCCGTTCCCCAGGACACAATGC
CCAGGAGTGTGTTGTTGTAGACCAGCGGACCACCGGAATCTCCCTGGCAT
GCATCCTTTCCACCTCCGTTGACTCCGGCGCAAAGCATACGACTGGTCAG
CATAATGGAATAGGCGTTCTTGCAGTTCGAGTTGTCCACCACATTAACGC
TGACCTCCTGCAGGACGTCGGAGATGGTTCCGCCTTCGCTGGTGGTTCCC
CAGCCCGTCACGGTAACGGGTGTATCATGATCGGGCCGCTCCTTGGCCAA
CTCAATCGGCTGCACGGCGTCGTTGAACTCGAAATCCCCATCCAGGATCA
GAATTGCCGCATCGTAGTCGTTGTTCAGAGTGCGATACTTGGGATGAATG
ATGATCTCACGGACTTCCAACTCCTGCTGCGGACCCGTGGGGAACCAGAT
GTTCGAG
BS13254.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12350-PA | 819 | lambdaTry-RA | 279..819 | 557..17 | 2705 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:55:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lambdaTry-RA | 952 | CG12350-RA | 299..839 | 557..17 | 2705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:55:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11337138..11337678 | 557..17 | 2705 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:55:09 has no hits.
BS13254.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:58 Download gff for
BS13254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12350-PA | 279..819 | 17..557 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:19 Download gff for
BS13254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lambdaTry-RA | 299..846 | 11..557 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:36 Download gff for
BS13254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lambdaTry-RA | 299..846 | 11..557 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:36 Download gff for
BS13254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11337138..11337685 | 11..557 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:19 Download gff for
BS13254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7224643..7225190 | 11..557 | 99 | | Minus |
BS13254.5prime Sequence
605 bp (546 high quality bases) assembled on 2006-10-13
> BS13254.5prime
GAAGTTATCAGTCGACATGTCACGGATTTTGGTTGTGTTTCTGGTGCTCG
GAGTGGGCTGCTCCCTGGCAGATCCTATATACCGGAACGAAGAGGTTCAT
ATACCGAAGCTCGATGGACGCATTGTCGGTGGACAGGACACGAACATCAC
CCAATATCCGCATCAGATCTCGATGAGGTATAGAGGAAATCACCGATGCG
GAGGCACAATTTACAGATCAAACCAGATCATCAGTGCTGCCCATTGTGTA
AACACCTTGTCCGGCCCGGAAAACCTTACCATTGTGGCTGGTTCCTCGAA
CATCTGGTTCCCCACGGGTCCGCAGCAGGAGTTGGAAGTCCGTGAGATCA
TCATTCATCCCAAGTATCGCACTCTGAACAACGACTACGATGCGGCAATT
CTGATCCTGGATGGGGATTTCGAGTTCAACGACGCCGTGCAGCCGATTGA
GTTGGCCAAGGAACGGCCCGATCATGATACACCCGTTACCGTGACGGGCT
GGGGAACCACCAGCGAAGGCGGAACCATCTCCGACGTCCTGCAGGAGGTC
AGCGTTAATGTGGTGGACAACTCGAACTGCAAGAACGCCTATTCCATTAT
GCTGA
BS13254.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12350-PA | 819 | lambdaTry-RA | 1..589 | 17..605 | 2920 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lambdaTry-RA | 952 | CG12350-RA | 21..609 | 17..605 | 2930 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11336860..11337448 | 17..605 | 2930 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:39:31 has no hits.
BS13254.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:58 Download gff for
BS13254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12350-PA | 1..588 | 17..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:27:17 Download gff for
BS13254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lambdaTry-RA | 15..608 | 12..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:29 Download gff for
BS13254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lambdaTry-RA | 15..608 | 12..604 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:29 Download gff for
BS13254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11336854..11337447 | 12..604 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:27:17 Download gff for
BS13254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7224359..7224952 | 12..604 | 99 | | Plus |
BS13254.complete Sequence
851 bp assembled on 2006-11-01
GenBank Submission: FJ637403
> BS13254.complete
GAAGTTATCAGTCGACATGTCACGGATTTTGGTTGTGTTTCTGGTGCTCG
GAGTGGGCTGCTCCCTGGCAGATCCTATATACCGGAACGAAGAGGTTCAT
ATACCGAAGCTCGATGGACGCATTGTCGGTGGACAGGACACGAACATCAC
CCAATATCCGCATCAGATCTCGATGAGGTATAGAGGAAATCACCGATGCG
GAGGCACAATTTACAGATCAAACCAGATCATCAGTGCTGCCCATTGTGTA
AACACCTTGTCCGGCCCGGAAAACCTTACCATTGTGGCTGGTTCCTCGAA
CATCTGGTTCCCCACGGGTCCGCAGCAGGAGTTGGAAGTCCGTGAGATCA
TCATTCATCCCAAGTATCGCACTCTGAACAACGACTACGATGCGGCAATT
CTGATCCTGGATGGGGATTTCGAGTTCAACGACGCCGTGCAGCCGATTGA
GTTGGCCAAGGAGCGGCCCGATCATGATACACCCGTTACCGTGACGGGCT
GGGGAACCACCAGCGAAGGCGGAACCATCTCCGACGTCCTGCAGGAGGTC
AGCGTTAATGTGGTGGACAACTCGAACTGCAAGAACGCCTATTCCATTAT
GCTGACCAGTCGTATGCTTTGCGCCGGAGTCAACGGAGGTGGAAAGGATG
CATGCCAGGGAGATTCCGGTGGTCCGCTGGTCTACAACAACACACTCCTG
GGCATTGTGTCCTGGGGAACGGGCTGTGCCCGTGAGAAATATCCCGGAGT
CTATTGCTCCGTACCGGATGTTCTCGATTGGCTGGTGGAGACCGTTGCGG
ATAAAGAGAGTGTGGGCAAAATCGACTTTCTGTAAAAGCTTTCTAGACCA
T
BS13254.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:59:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lambdaTry-RA | 819 | CG12350-PA | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lambdaTry-RA | 952 | CG12350-RA | 21..839 | 17..835 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11336860..11337678 | 17..835 | 4095 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:59:11 has no hits.
BS13254.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:01 Download gff for
BS13254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lambdaTry-RA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:49 Download gff for
BS13254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lambdaTry-RA | 7..838 | 12..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:01 Download gff for
BS13254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lambdaTry-RA | 21..837 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:01 Download gff for
BS13254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lambdaTry-RA | 7..838 | 12..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:32 Download gff for
BS13254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lambdaTry-RA | 21..837 | 17..833 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:32 Download gff for
BS13254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11336860..11337676 | 17..833 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:01 Download gff for
BS13254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7224365..7225181 | 17..833 | 100 | | Plus |
BS13254.pep Sequence
Translation from 16 to 834
> BS13254.pep
MSRILVVFLVLGVGCSLADPIYRNEEVHIPKLDGRIVGGQDTNITQYPHQ
ISMRYRGNHRCGGTIYRSNQIISAAHCVNTLSGPENLTIVAGSSNIWFPT
GPQQELEVREIIIHPKYRTLNNDYDAAILILDGDFEFNDAVQPIELAKER
PDHDTPVTVTGWGTTSEGGTISDVLQEVSVNVVDNSNCKNAYSIMLTSRM
LCAGVNGGGKDACQGDSGGPLVYNNTLLGIVSWGTGCAREKYPGVYCSVP
DVLDWLVETVADKESVGKIDFL*
BS13254.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lambdaTry-PA | 272 | CG12350-PA | 1..272 | 1..272 | 1449 | 100 | Plus |
| gammaTry-PA | 253 | CG30028-PA | 5..250 | 7..257 | 468 | 42 | Plus |
| deltaTry-PA | 253 | CG12351-PA | 5..250 | 7..257 | 468 | 42 | Plus |
| CG30031-PA | 253 | CG30031-PA | 5..250 | 7..257 | 468 | 42 | Plus |
| CG30025-PA | 253 | CG30025-PA | 5..250 | 7..257 | 468 | 42 | Plus |
