Clone Sequence Records
BS13255.3prime Sequence
588 bp (535 high quality bases) assembled on 2006-10-13
> BS13255.3prime
ATGGTCTAGAAAGCTTTTAGGCGACGATGGGAGCGGCCAGGGTCTTGGCG
AAGACTGGAGCGGGGGCAGCAGCCACAACTGGAGCCACTGGAGCAGCCAC
GGTCTTGGCCAAAACTGGAGCCACTGGGGCAACAGCCACGGGCACATCCT
TCTGCACCACTGCGTTGAAACCGTTGATGGAGTCGGCGTAGTAGCTGACA
ATACGACGGGAACCATCGGGCTCGATCAGAGAGTAGGATCCACGGACGAC
ATCACCATCACGAGTCTCCTCCTGGGTCTTGGAGTCACCGGTTAGCGTAT
CCTGGACATCGTAGGCGAACTTGTACTGTGGGTGGGCATCCACGATCTCG
GTGGCGATGGGAGCAGCAACTGGAGCAGCCAGGGGAGCAGCAACTGGAGC
AGCCAGGGGAGCGGCTACTGGAGCAACTGGGGCAGCGAGAGGAGCGGCGA
CTGGGGCAGCCAGGCGAGCAGCAACTGGGGCAACTGGAGCAGCGAAGGGA
GCGGCGAAAGGAGCGGCAGCGTAGGTCTTGGACACCAGGGGAGCAGGTCC
CGCCACCAGAGGGGCGTTGTATCCCAAAGGAGCCGCGT
BS13255.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1259-PB | 744 | CG1259-RB | 173..744 | 588..17 | 2860 | 100 | Minus |
CG1331-PA | 456 | Ccp84Af-RA | 181..209 | 328..300 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr64Ad-RB | 961 | CG1259-RB | 244..815 | 588..17 | 2860 | 100 | Minus |
Cpr64Ab-RA | 552 | CG15007-RA | 174..365 | 343..152 | 270 | 76 | Minus |
Ccp84Af-RA | 580 | CG1331-RA | 222..400 | 340..162 | 250 | 76.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4215697..4216268 | 588..17 | 2860 | 100 | Minus |
3L | 28110227 | 3L | 4211067..4211258 | 152..343 | 270 | 76 | Plus |
3R | 32079331 | 3R | 6689782..6689960 | 162..340 | 250 | 76 | Plus |
3R | 32079331 | 3R | 6687148..6687283 | 289..154 | 245 | 78.7 | Minus |
3R | 32079331 | 3R | 6695754..6695928 | 153..327 | 245 | 76 | Plus |
3R | 32079331 | 3R | 6693027..6693154 | 340..213 | 235 | 78.9 | Minus |
3L | 28110227 | 3L | 4215803..4215902 | 458..359 | 200 | 80 | Minus |
3L | 28110227 | 3L | 4215827..4215926 | 482..383 | 200 | 80 | Minus |
3L | 28110227 | 3L | 1841060..1841112 | 210..262 | 190 | 90.6 | Plus |
Blast to na_te.dros performed 2015-02-10 18:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2817 | 467..520 | 126 | 70.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2845 | 66..144 | 122 | 63.3 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 994..1038 | 507..463 | 108 | 71.1 | Minus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 671..720 | 97..48 | 106 | 68 | Minus |
BS13255.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:59 Download gff for
BS13255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1259-PB | 173..744 | 17..588 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:17 Download gff for
BS13255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Ad-RB | 244..815 | 17..588 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:29:59 Download gff for
BS13255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Ad-RB | 244..815 | 17..588 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:29:59 Download gff for
BS13255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4215697..4216268 | 17..588 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:17 Download gff for
BS13255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4215697..4216268 | 17..588 | 100 | | Minus |
BS13255.5prime Sequence
667 bp (535 high quality bases) assembled on 2006-10-13
> BS13255.5prime
GAAGTTATCAGTCGACATGAATCCTCTGACGGTTGTTGCAGTCCTTTCCT
CGATGGCCCTCTCGGCTCAGGCTGGTCTGGTTGGCGCTCCTCTGGCCGCC
GCTCCTCTGGGTGCTCCTCTGGCTTACTCCGCCCCTCTGGGACCTGCTCC
ATACTTCGCCCCGGCTGCGTACTCCGCCCCTCTGGGCTACGCGGCTCCTT
TGGGATACAACGCCCCTCTGGTGGCGGGACCTGCTCCCCTGGTGTCCAAG
ACCTACGCTGCCGCTCCTTTCGCCGCTCCCTTCGCTGCTCCAGTTGCCCC
AGTTGCTGCTCGCCTGGCTGCCCCAGTCGCCGCTCCTCTCGCTGCCCCAG
TTGCTCCAGTAGCCGCTCCCCTGGCTGCTCCAGTTGCTGCTCCCCTGGCT
GCTCCAGTTGCTGCTCCCATCGCCACCGAGATCGTGGATGCCCACCCACA
GTACAAGTTCGCCTACGATGTCCAGGATACGCTAACCGGTGACTCCAAGA
CCCAGGAGGAGACTCGTGATGGTGATGTCGTCCGTGGATCCTACTCTCTG
ATCGAGCCCAATGGTTCCCGTCGTATTGTCAGCTACTTACGCCGACTCCA
TCAACGGTTTCAAGCAGTGGTGCAAAAGGATGTGCCCGTGGCTGTTGCCC
CAGTGGTTCCCGTTTGG
BS13255.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1259-PB | 744 | CG1259-RB | 1..571 | 17..587 | 2830 | 99.8 | Plus |
CG1259-PB | 744 | CG1259-RB | 598..640 | 614..656 | 190 | 97.6 | Plus |
CG1331-PA | 456 | Ccp84Af-RA | 181..209 | 449..477 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:54:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr64Ad-RB | 961 | CG1259-RB | 72..720 | 17..665 | 3140 | 99.1 | Plus |
Ccp84Ad-RA | 735 | CG2341-RA | 235..353 | 437..555 | 220 | 79 | Plus |
Cpr64Ab-RA | 552 | CG15007-RA | 174..364 | 434..624 | 220 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4215539..4216173 | 31..665 | 3020 | 99.1 | Plus |
3R | 32079331 | 3R | 6693027..6693145 | 437..555 | 220 | 79 | Plus |
3R | 32079331 | 3R | 6689842..6689960 | 555..437 | 205 | 78.2 | Minus |
3R | 32079331 | 3R | 6695828..6695928 | 550..450 | 205 | 80.2 | Minus |
3L | 28110227 | 3L | 4215803..4215902 | 319..418 | 200 | 80 | Plus |
3L | 28110227 | 3L | 4215827..4215926 | 295..394 | 200 | 80 | Plus |
Blast to na_te.dros performed 2015-02-02 18:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2817 | 310..257 | 126 | 70.4 | Minus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 994..1038 | 270..314 | 108 | 71.1 | Plus |
BS13255.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:59 Download gff for
BS13255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1259-PB | 1..651 | 17..667 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:25 Download gff for
BS13255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Ad-RB | 72..722 | 17..667 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:18 Download gff for
BS13255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Ad-RB | 72..722 | 17..667 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:18 Download gff for
BS13255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4215540..4216175 | 32..667 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:25 Download gff for
BS13255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4215540..4216175 | 32..667 | 98 | | Plus |
BS13255.complete Sequence
776 bp assembled on 2006-11-01
GenBank Submission: FJ637404
> BS13255.complete
GAAGTTATCAGTCGACATGAATCCTCTGACGGTTGTTGCAGTCCTTTCCT
CGATGGCCCTCTCGGCTCAGGCTGGTCTGGTTGGCGCTCCTCTGGCCGCC
GCTCCTCTGGGTGCTCCTCTGGCTTACTCCGCCCCTCTGGGACCTGCTCC
ATACTTCGCCCCGGCTGCGTACTCCGCCCCTCTGGGCTACGCGGCTCCTT
TGGGATACAACGCCCCTCTGGTGGCGGGACCTGCTCCCCTGGTGTCCAAG
ACCTACGCTGCCGCTCCTTTCGCCGCTCCCTTCGCTGCTCCAGTTGCCCC
AGTTGCTGCTCGCCTGGCTGCCCCAGTCGCCGCTCCTCTCGCTGCCCCAG
TTGCTCCAGTAGCCGCTCCCCTGGCTGCTCCAGTTGCTGCTCCCCTGGCT
GCTCCAGTTGCTGCTCCCATCGCCACCGAGATCGTGGATGCCCACCCACA
GTACAAGTTCGCCTACGATGTCCAGGATACGCTAACCGGTGACTCCAAGA
CCCAGGAGGAGACTCGTGATGGTGATGTCGTCCGTGGATCCTACTCTCTG
ATCGAGCCCGATGGTTCCCGTCGTATTGTCAGCTACTACGCCGACTCCAT
CAACGGTTTCAACGCAGTGGTGCAGAAGGATGTGCCCGTGGCTGTTGCCC
CAGTGGCTCCAGTTTTGGCCAAGACCGTGGCTGCTCCAGTGGCTCCAGTT
GTGGCTGCTGCCCCCGCTCCAGTCTTCGCCAAGACCCTGGCCGCTCCCAT
CGTCGCCTAAAAGCTTTCTAGACCAT
BS13255.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr64Ad-RB | 744 | CG1259-PB | 1..744 | 17..760 | 3720 | 100 | Plus |
Cpr64Ab-RA | 363 | CG15007-PA | 106..297 | 434..625 | 270 | 76 | Plus |
Ccp84Af-RA | 456 | CG1331-PA | 169..347 | 437..615 | 250 | 76 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr64Ad-RB | 961 | CG1259-RB | 72..815 | 17..760 | 3720 | 100 | Plus |
Cpr64Ab-RA | 552 | CG15007-RA | 174..365 | 434..625 | 270 | 76 | Plus |
Ccp84Af-RA | 580 | CG1331-RA | 222..400 | 437..615 | 250 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4215539..4216268 | 31..760 | 3650 | 100 | Plus |
3L | 28110227 | 3L | 4211067..4211258 | 625..434 | 270 | 76 | Minus |
3R | 32079331 | 3R | 6689782..6689960 | 615..437 | 250 | 76 | Minus |
3R | 32079331 | 3R | 6687148..6687283 | 488..623 | 245 | 78.7 | Plus |
3R | 32079331 | 3R | 6695754..6695928 | 624..450 | 245 | 76 | Minus |
3R | 32079331 | 3R | 6693027..6693154 | 437..564 | 235 | 78.9 | Plus |
3L | 28110227 | 3L | 4215803..4215902 | 319..418 | 200 | 80 | Plus |
3L | 28110227 | 3L | 4215827..4215926 | 295..394 | 200 | 80 | Plus |
3L | 28110227 | 3L | 1841060..1841112 | 567..515 | 190 | 90.6 | Minus |
Blast to na_te.dros performed 2014-11-27 23:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2817 | 310..257 | 126 | 70.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2845 | 711..633 | 122 | 63.3 | Minus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 994..1038 | 270..314 | 108 | 71.1 | Plus |
BS13255.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:02 Download gff for
BS13255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Ad-RB | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:51 Download gff for
BS13255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Ad-RB | 67..810 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:37 Download gff for
BS13255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Ad-RB | 72..813 | 17..758 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:02 Download gff for
BS13255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Ad-RB | 67..810 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:46 Download gff for
BS13255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Ad-RB | 72..813 | 17..758 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:46 Download gff for
BS13255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4215540..4216266 | 32..758 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:37 Download gff for
BS13255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4215540..4216266 | 32..758 | 100 | | Plus |
BS13255.pep Sequence
Translation from 16 to 759
> BS13255.pep
MNPLTVVAVLSSMALSAQAGLVGAPLAAAPLGAPLAYSAPLGPAPYFAPA
AYSAPLGYAAPLGYNAPLVAGPAPLVSKTYAAAPFAAPFAAPVAPVAARL
AAPVAAPLAAPVAPVAAPLAAPVAAPLAAPVAAPIATEIVDAHPQYKFAY
DVQDTLTGDSKTQEETRDGDVVRGSYSLIEPDGSRRIVSYYADSINGFNA
VVQKDVPVAVAPVAPVLAKTVAAPVAPVVAAAPAPVFAKTLAAPIVA*
BS13255.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr64Ad-PB | 247 | CG1259-PB | 1..247 | 1..247 | 1226 | 100 | Plus |
Ccp84Ad-PA | 199 | CG2341-PA | 2..161 | 86..242 | 349 | 54.3 | Plus |
Ccp84Aa-PA | 205 | CG2360-PA | 3..161 | 85..242 | 339 | 52.8 | Plus |
Ccp84Ab-PA | 221 | CG1252-PA | 3..161 | 85..242 | 334 | 52.1 | Plus |
Cpr5C-PA | 145 | CG4052-PA | 2..142 | 86..231 | 326 | 53.7 | Plus |