Clone BS13255 Report

Search the DGRC for BS13255

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCpr64Ad-RB
Protein status:BS13255.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13255.3prime Sequence

588 bp (535 high quality bases) assembled on 2006-10-13

> BS13255.3prime
ATGGTCTAGAAAGCTTTTAGGCGACGATGGGAGCGGCCAGGGTCTTGGCG
AAGACTGGAGCGGGGGCAGCAGCCACAACTGGAGCCACTGGAGCAGCCAC
GGTCTTGGCCAAAACTGGAGCCACTGGGGCAACAGCCACGGGCACATCCT
TCTGCACCACTGCGTTGAAACCGTTGATGGAGTCGGCGTAGTAGCTGACA
ATACGACGGGAACCATCGGGCTCGATCAGAGAGTAGGATCCACGGACGAC
ATCACCATCACGAGTCTCCTCCTGGGTCTTGGAGTCACCGGTTAGCGTAT
CCTGGACATCGTAGGCGAACTTGTACTGTGGGTGGGCATCCACGATCTCG
GTGGCGATGGGAGCAGCAACTGGAGCAGCCAGGGGAGCAGCAACTGGAGC
AGCCAGGGGAGCGGCTACTGGAGCAACTGGGGCAGCGAGAGGAGCGGCGA
CTGGGGCAGCCAGGCGAGCAGCAACTGGGGCAACTGGAGCAGCGAAGGGA
GCGGCGAAAGGAGCGGCAGCGTAGGTCTTGGACACCAGGGGAGCAGGTCC
CGCCACCAGAGGGGCGTTGTATCCCAAAGGAGCCGCGT

BS13255.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1259-PB 744 CG1259-RB 173..744 588..17 2860 100 Minus
CG1331-PA 456 Ccp84Af-RA 181..209 328..300 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr64Ad-RB 961 CG1259-RB 244..815 588..17 2860 100 Minus
Cpr64Ab-RA 552 CG15007-RA 174..365 343..152 270 76 Minus
Ccp84Af-RA 580 CG1331-RA 222..400 340..162 250 76.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4215697..4216268 588..17 2860 100 Minus
3L 28110227 3L 4211067..4211258 152..343 270 76 Plus
3R 32079331 3R 6689782..6689960 162..340 250 76 Plus
3R 32079331 3R 6687148..6687283 289..154 245 78.7 Minus
3R 32079331 3R 6695754..6695928 153..327 245 76 Plus
3R 32079331 3R 6693027..6693154 340..213 235 78.9 Minus
3L 28110227 3L 4215803..4215902 458..359 200 80 Minus
3L 28110227 3L 4215827..4215926 482..383 200 80 Minus
3L 28110227 3L 1841060..1841112 210..262 190 90.6 Plus
Blast to na_te.dros performed 2015-02-10 18:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2764..2817 467..520 126 70.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2768..2845 66..144 122 63.3 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 994..1038 507..463 108 71.1 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 671..720 97..48 106 68 Minus

BS13255.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:59 Download gff for BS13255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1259-PB 173..744 17..588 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:17 Download gff for BS13255.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr64Ad-RB 244..815 17..588 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:29:59 Download gff for BS13255.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr64Ad-RB 244..815 17..588 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:29:59 Download gff for BS13255.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4215697..4216268 17..588 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:17 Download gff for BS13255.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4215697..4216268 17..588 100   Minus

BS13255.5prime Sequence

667 bp (535 high quality bases) assembled on 2006-10-13

> BS13255.5prime
GAAGTTATCAGTCGACATGAATCCTCTGACGGTTGTTGCAGTCCTTTCCT
CGATGGCCCTCTCGGCTCAGGCTGGTCTGGTTGGCGCTCCTCTGGCCGCC
GCTCCTCTGGGTGCTCCTCTGGCTTACTCCGCCCCTCTGGGACCTGCTCC
ATACTTCGCCCCGGCTGCGTACTCCGCCCCTCTGGGCTACGCGGCTCCTT
TGGGATACAACGCCCCTCTGGTGGCGGGACCTGCTCCCCTGGTGTCCAAG
ACCTACGCTGCCGCTCCTTTCGCCGCTCCCTTCGCTGCTCCAGTTGCCCC
AGTTGCTGCTCGCCTGGCTGCCCCAGTCGCCGCTCCTCTCGCTGCCCCAG
TTGCTCCAGTAGCCGCTCCCCTGGCTGCTCCAGTTGCTGCTCCCCTGGCT
GCTCCAGTTGCTGCTCCCATCGCCACCGAGATCGTGGATGCCCACCCACA
GTACAAGTTCGCCTACGATGTCCAGGATACGCTAACCGGTGACTCCAAGA
CCCAGGAGGAGACTCGTGATGGTGATGTCGTCCGTGGATCCTACTCTCTG
ATCGAGCCCAATGGTTCCCGTCGTATTGTCAGCTACTTACGCCGACTCCA
TCAACGGTTTCAAGCAGTGGTGCAAAAGGATGTGCCCGTGGCTGTTGCCC
CAGTGGTTCCCGTTTGG

BS13255.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1259-PB 744 CG1259-RB 1..571 17..587 2830 99.8 Plus
CG1259-PB 744 CG1259-RB 598..640 614..656 190 97.6 Plus
CG1331-PA 456 Ccp84Af-RA 181..209 449..477 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr64Ad-RB 961 CG1259-RB 72..720 17..665 3140 99.1 Plus
Ccp84Ad-RA 735 CG2341-RA 235..353 437..555 220 79 Plus
Cpr64Ab-RA 552 CG15007-RA 174..364 434..624 220 75 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4215539..4216173 31..665 3020 99.1 Plus
3R 32079331 3R 6693027..6693145 437..555 220 79 Plus
3R 32079331 3R 6689842..6689960 555..437 205 78.2 Minus
3R 32079331 3R 6695828..6695928 550..450 205 80.2 Minus
3L 28110227 3L 4215803..4215902 319..418 200 80 Plus
3L 28110227 3L 4215827..4215926 295..394 200 80 Plus
Blast to na_te.dros performed 2015-02-02 18:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2764..2817 310..257 126 70.4 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 994..1038 270..314 108 71.1 Plus

BS13255.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:59 Download gff for BS13255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1259-PB 1..651 17..667 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:25 Download gff for BS13255.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr64Ad-RB 72..722 17..667 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:18 Download gff for BS13255.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr64Ad-RB 72..722 17..667 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:18 Download gff for BS13255.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4215540..4216175 32..667 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:25 Download gff for BS13255.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4215540..4216175 32..667 98   Plus

BS13255.complete Sequence

776 bp assembled on 2006-11-01

GenBank Submission: FJ637404

> BS13255.complete
GAAGTTATCAGTCGACATGAATCCTCTGACGGTTGTTGCAGTCCTTTCCT
CGATGGCCCTCTCGGCTCAGGCTGGTCTGGTTGGCGCTCCTCTGGCCGCC
GCTCCTCTGGGTGCTCCTCTGGCTTACTCCGCCCCTCTGGGACCTGCTCC
ATACTTCGCCCCGGCTGCGTACTCCGCCCCTCTGGGCTACGCGGCTCCTT
TGGGATACAACGCCCCTCTGGTGGCGGGACCTGCTCCCCTGGTGTCCAAG
ACCTACGCTGCCGCTCCTTTCGCCGCTCCCTTCGCTGCTCCAGTTGCCCC
AGTTGCTGCTCGCCTGGCTGCCCCAGTCGCCGCTCCTCTCGCTGCCCCAG
TTGCTCCAGTAGCCGCTCCCCTGGCTGCTCCAGTTGCTGCTCCCCTGGCT
GCTCCAGTTGCTGCTCCCATCGCCACCGAGATCGTGGATGCCCACCCACA
GTACAAGTTCGCCTACGATGTCCAGGATACGCTAACCGGTGACTCCAAGA
CCCAGGAGGAGACTCGTGATGGTGATGTCGTCCGTGGATCCTACTCTCTG
ATCGAGCCCGATGGTTCCCGTCGTATTGTCAGCTACTACGCCGACTCCAT
CAACGGTTTCAACGCAGTGGTGCAGAAGGATGTGCCCGTGGCTGTTGCCC
CAGTGGCTCCAGTTTTGGCCAAGACCGTGGCTGCTCCAGTGGCTCCAGTT
GTGGCTGCTGCCCCCGCTCCAGTCTTCGCCAAGACCCTGGCCGCTCCCAT
CGTCGCCTAAAAGCTTTCTAGACCAT

BS13255.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr64Ad-RB 744 CG1259-PB 1..744 17..760 3720 100 Plus
Cpr64Ab-RA 363 CG15007-PA 106..297 434..625 270 76 Plus
Ccp84Af-RA 456 CG1331-PA 169..347 437..615 250 76 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr64Ad-RB 961 CG1259-RB 72..815 17..760 3720 100 Plus
Cpr64Ab-RA 552 CG15007-RA 174..365 434..625 270 76 Plus
Ccp84Af-RA 580 CG1331-RA 222..400 437..615 250 76 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4215539..4216268 31..760 3650 100 Plus
3L 28110227 3L 4211067..4211258 625..434 270 76 Minus
3R 32079331 3R 6689782..6689960 615..437 250 76 Minus
3R 32079331 3R 6687148..6687283 488..623 245 78.7 Plus
3R 32079331 3R 6695754..6695928 624..450 245 76 Minus
3R 32079331 3R 6693027..6693154 437..564 235 78.9 Plus
3L 28110227 3L 4215803..4215902 319..418 200 80 Plus
3L 28110227 3L 4215827..4215926 295..394 200 80 Plus
3L 28110227 3L 1841060..1841112 567..515 190 90.6 Minus
Blast to na_te.dros performed 2014-11-27 23:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2764..2817 310..257 126 70.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2768..2845 711..633 122 63.3 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 994..1038 270..314 108 71.1 Plus

BS13255.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:02 Download gff for BS13255.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr64Ad-RB 1..744 17..760 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:51 Download gff for BS13255.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr64Ad-RB 67..810 17..760 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:37 Download gff for BS13255.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr64Ad-RB 72..813 17..758 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:02 Download gff for BS13255.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr64Ad-RB 67..810 17..760 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:46 Download gff for BS13255.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr64Ad-RB 72..813 17..758 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:46 Download gff for BS13255.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4215540..4216266 32..758 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:37 Download gff for BS13255.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4215540..4216266 32..758 100   Plus

BS13255.pep Sequence

Translation from 16 to 759

> BS13255.pep
MNPLTVVAVLSSMALSAQAGLVGAPLAAAPLGAPLAYSAPLGPAPYFAPA
AYSAPLGYAAPLGYNAPLVAGPAPLVSKTYAAAPFAAPFAAPVAPVAARL
AAPVAAPLAAPVAPVAAPLAAPVAAPLAAPVAAPIATEIVDAHPQYKFAY
DVQDTLTGDSKTQEETRDGDVVRGSYSLIEPDGSRRIVSYYADSINGFNA
VVQKDVPVAVAPVAPVLAKTVAAPVAPVVAAAPAPVFAKTLAAPIVA*

BS13255.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr64Ad-PB 247 CG1259-PB 1..247 1..247 1226 100 Plus
Ccp84Ad-PA 199 CG2341-PA 2..161 86..242 349 54.3 Plus
Ccp84Aa-PA 205 CG2360-PA 3..161 85..242 339 52.8 Plus
Ccp84Ab-PA 221 CG1252-PA 3..161 85..242 334 52.1 Plus
Cpr5C-PA 145 CG4052-PA 2..142 86..231 326 53.7 Plus