Clone BS13256 Report

Search the DGRC for BS13256

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG4623-RA
Protein status:BS13256.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13256.3prime Sequence

664 bp (599 high quality bases) assembled on 2006-10-13

> BS13256.3prime
ATGGTCTAGAAAGCTTTCACTTGTGCGCGAAGGCGGCGAACATGGCCATA
CCCAGGAAGCCGGCGCCCGCTCCTAGCTTATAGTTGCCCGGCGTTCGGGT
CCACATTTCGCGCAGTATGGCAAAGTTGCTCGGCTGCAGGCGGTGGAAGG
ACTCGCGCTGCCGGAAGCGCAAGAAGTATGCCTCCACCTGCGGCAGCTTT
CCGAAGGTCCAGAACTGATTCTCGAATCCCAGCTGATACAGTCGATGCAG
CAGCAATCCCAGCGAGATATCCGCCACGCTCAGTTCGTCGCCGGTCAGCC
ACTCAACGCGTGGCGCCTGGGCGGTTAGCTCCTGCTCCACATAGAGCAGA
AAGTGCCGCACGGCATCCAGAACCTTCTGGAATTCCTCGCGGGACGAGGC
CAGCTCGTGGCGGCGCAACTGTATGTCCAGCTTGTGCTGCAGCGCTGCTT
TTTTGGTCGCCTGTTCGTCCACCGAGTGGCGCAGCAGATCCAGCACCTTT
TCATTGTTTTTCAGGCAGGACTGGCGCACGGGTCCGATGAAGGGCGCCTT
GGGCACCAGCTTCAGATCGTCGTGTATGAAGGAGCCCAGGCTGAGTGTTC
CCACTGGAAGGCGGGCCATTGCCTGCTCGAAGATCAGCATTTGATCGAAT
TCCTTGGAGTTGTG

BS13256.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4623-PA 984 CG4623-RA 337..984 664..17 3240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4623-RB 1594 CG4623-RB 686..1333 664..17 3240 100 Minus
CG4623-RA 1597 CG4623-RA 689..1336 664..17 3240 100 Minus
CG4623-RC 1511 CG4623-RC 689..1301 664..52 3065 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5143563..5144056 510..17 2470 100 Minus
3L 28110227 3L 5143344..5143497 664..511 770 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:25:40 has no hits.

BS13256.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:00 Download gff for BS13256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4623-PA 337..984 17..664 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:54 Download gff for BS13256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 689..1338 13..664 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:37:16 Download gff for BS13256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 689..1338 13..664 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:37:16 Download gff for BS13256.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5143344..5143497 511..664 100 -> Minus
3L 5143563..5144058 13..510 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:54 Download gff for BS13256.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5136444..5136597 511..664 100 -> Minus
arm_3L 5136663..5137158 13..510 99   Minus

BS13256.5prime Sequence

682 bp (630 high quality bases) assembled on 2006-10-13

> BS13256.5prime
GAAGTTATCAGTCGACATGAGCGAGCAGACAAAGGAAATCGAAGCTCTGC
CGCCCACCTTGCAGGACTTCAAGGCTCCCGATCTGCCGGCCAATAAGCCA
GTGCTCTTCTTCCATCCGTACAACTTCCATGCGCAAAAAGTTCTTATGGT
CTTCTACGAGAAGAAGATCGACTTCTTTCCCTATGTGGTGGACCTGTGCA
ATGGCGAGCAGTACTCCAATTGGTTCCTAAACCTCAATCCCAAGGGCGAT
GTGCCAGTGCTCCAGGATGGCGCCCTCGTCATTCCCAGCTCGACGCACAT
CATCAACTATGTGGAGAGCAAATTTCGCGGTGATCGATCGCTGAAGCCAG
CGCACAACTCCAAGGAATTCGATCAAATGCTGATCTTCGAGCAGGCAATG
GCCCGCCTTCCAGTGGGAACACTCAGCCTGGGCTCCTTCATACACGACGA
TCTGAAGCTGGTGCCCAAGGCGCCCTTCATCGGACCCGTGCGCCAGTCCT
GCCTGAAAAACAATGAAAAGGTGCTGGATCTGCTGCGCCACTCGGTGGAC
GAACAGGCGACCAAAAAAGCAGCGCTGCAGCACAAGCTGGACATACAGTT
GCGCCGCCACGAGCTGGCCTCGTCCCGCGAGGAATTCCAGAAGGTTCTGG
ATGCCGTGCGGCACTTTCTGCTCTATGTGGAG

BS13256.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4623-PA 984 CG4623-RA 1..666 17..682 3330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4623-RC 1511 CG4623-RC 353..1018 17..682 3330 100 Plus
CG4623-RA 1597 CG4623-RA 353..1018 17..682 3330 100 Plus
CG4623-RB 1594 CG4623-RB 353..1015 17..682 3275 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5143073..5143265 140..332 965 100 Plus
3L 28110227 3L 5143563..5143738 507..682 880 100 Plus
3L 28110227 3L 5143323..5143497 332..506 875 100 Plus
3L 28110227 3L 5142305..5142430 17..142 630 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:46:59 has no hits.

BS13256.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:00 Download gff for BS13256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4623-PA 1..666 17..682 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:45:55 Download gff for BS13256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 353..1018 17..682 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:04:37 Download gff for BS13256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 353..1018 17..682 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:04:37 Download gff for BS13256.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5142305..5142427 17..139 100 -> Plus
3L 5143073..5143265 140..332 100 -> Plus
3L 5143324..5143497 333..506 100 -> Plus
3L 5143563..5143738 507..682 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:45:55 Download gff for BS13256.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5135405..5135527 17..139 100 -> Plus
arm_3L 5136173..5136365 140..332 100 -> Plus
arm_3L 5136424..5136597 333..506 100 -> Plus
arm_3L 5136663..5136838 507..682 100   Plus

BS13256.complete Sequence

1016 bp assembled on 2006-11-01

GenBank Submission: FJ637405

> BS13256.complete
GAAGTTATCAGTCGACATGAGCGAGCAGACAAAGGAAATCGAAGCTCTGC
CGCCCACCTTGCAGGACTTCAAGGCTCCCGATCTGCCGGCCAATAAGCCA
GTGCTCTTCTTCCATCCGTACAACTTCCATGCGCAAAAAGTTCTTATGGT
CTTCTACGAGAAGAAGATCGACTTCTTTCCCTATGTGGTGGACCTGTGCA
ATGGCGAGCAGTACTCCAATTGGTTCCTAAACCTCAATCCCAAGGGCGAT
GTGCCAGTGCTCCAGGATGGCGCCCTCGTCATTCCCAGCTCGACGCACAT
CATCAACTATGTGGAGAGCAAATTTCGCGGTGATCGATCGCTGAAGCCAG
CGCACAACTCCAAGGAATTCGATCAAATGCTGATCTTCGAGCAGGCAATG
GCCCGCCTTCCAGTGGGAACACTCAGCCTGGGCTCCTTCATACACGACGA
TCTGAAGCTGGTGCCCAAGGCGCCCTTCATCGGACCCGTGCGCCAGTCCT
GCCTGAAAAACAATGAAAAGGTGCTGGATCTGCTGCGCCACTCGGTGGAC
GAACAGGCGACCAAAAAAGCAGCGCTGCAGCACAAGCTGGACATACAGTT
GCGCCGCCACGAGCTGGCCTCGTCCCGCGAGGAATTCCAGAAGGTTCTGG
ATGCCGTGCGGCACTTTCTGCTCTATGTGGAGCAGGAGCTAACCGCCCAG
GCGCCACGCGTTGAGTGGCTGACCGGCGACGAACTGAGCGTGGCGGATAT
CTCGCTGGGATTGCTGCTGCATCGACTGTATCAGCTGGGATTCGAGAATC
AGTTCTGGACCTTCGGAAAGCTGCCGCAGGTGGAGGCATACTTCTTGCGC
TTCCGGCAGCGCGAGTCCTTCCACCGCCTGCAGCCGAGCAACTTTGCCAT
ACTGCGCGAAATGTGGACCCGAACGCCGGGCAACTATAAGCTAGGAGCGG
GCGCCGGCTTCCTGGGTATGGCCATGTTCGCCGCCTTCGCGCACAAGTGA
AAGCTTTCTAGACCAT

BS13256.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4623-RA 984 CG4623-PA 1..984 17..1000 4920 100 Plus
CG4623-RB 981 CG4623-PB 1..981 17..1000 4840 99.7 Plus
CG4623-RC 963 CG4623-PC 1..949 17..965 4745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4623-RA 1597 CG4623-RA 353..1336 17..1000 4920 100 Plus
CG4623-RB 1594 CG4623-RB 353..1333 17..1000 4840 99.7 Plus
CG4623-RC 1511 CG4623-RC 353..1301 17..965 4745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5143563..5144056 507..1000 2470 100 Plus
3L 28110227 3L 5143073..5143265 140..332 965 100 Plus
3L 28110227 3L 5143323..5143497 332..506 875 100 Plus
3L 28110227 3L 5142305..5142430 17..142 630 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:58:28 has no hits.

BS13256.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:03 Download gff for BS13256.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 1..984 17..1000 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:53 Download gff for BS13256.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 351..1336 17..1004 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:44 Download gff for BS13256.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 353..1335 17..999 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:04 Download gff for BS13256.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 351..1336 17..1004 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:58 Download gff for BS13256.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 353..1335 17..999 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:58 Download gff for BS13256.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5143324..5143497 333..506 100 -> Plus
3L 5142305..5142427 17..139 100 -> Plus
3L 5143073..5143265 140..332 100 -> Plus
3L 5143563..5144055 507..999 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:44 Download gff for BS13256.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5136424..5136597 333..506 100 -> Plus
arm_3L 5135405..5135527 17..139 100 -> Plus
arm_3L 5136173..5136365 140..332 100 -> Plus
arm_3L 5136663..5137155 507..999 100   Plus

BS13256.pep Sequence

Translation from 16 to 999

> BS13256.pep
MSEQTKEIEALPPTLQDFKAPDLPANKPVLFFHPYNFHAQKVLMVFYEKK
IDFFPYVVDLCNGEQYSNWFLNLNPKGDVPVLQDGALVIPSSTHIINYVE
SKFRGDRSLKPAHNSKEFDQMLIFEQAMARLPVGTLSLGSFIHDDLKLVP
KAPFIGPVRQSCLKNNEKVLDLLRHSVDEQATKKAALQHKLDIQLRRHEL
ASSREEFQKVLDAVRHFLLYVEQELTAQAPRVEWLTGDELSVADISLGLL
LHRLYQLGFENQFWTFGKLPQVEAYFLRFRQRESFHRLQPSNFAILREMW
TRTPGNYKLGAGAGFLGMAMFAAFAHK*

BS13256.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4623-PA 327 CG4623-PA 1..327 1..327 1713 100 Plus
CG4623-PB 326 CG4623-PB 1..326 1..327 1695 99.7 Plus
CG4623-PC 320 CG4623-PC 1..316 1..316 1656 100 Plus