Clone Sequence Records
BS13256.3prime Sequence
664 bp (599 high quality bases) assembled on 2006-10-13
> BS13256.3prime
ATGGTCTAGAAAGCTTTCACTTGTGCGCGAAGGCGGCGAACATGGCCATA
CCCAGGAAGCCGGCGCCCGCTCCTAGCTTATAGTTGCCCGGCGTTCGGGT
CCACATTTCGCGCAGTATGGCAAAGTTGCTCGGCTGCAGGCGGTGGAAGG
ACTCGCGCTGCCGGAAGCGCAAGAAGTATGCCTCCACCTGCGGCAGCTTT
CCGAAGGTCCAGAACTGATTCTCGAATCCCAGCTGATACAGTCGATGCAG
CAGCAATCCCAGCGAGATATCCGCCACGCTCAGTTCGTCGCCGGTCAGCC
ACTCAACGCGTGGCGCCTGGGCGGTTAGCTCCTGCTCCACATAGAGCAGA
AAGTGCCGCACGGCATCCAGAACCTTCTGGAATTCCTCGCGGGACGAGGC
CAGCTCGTGGCGGCGCAACTGTATGTCCAGCTTGTGCTGCAGCGCTGCTT
TTTTGGTCGCCTGTTCGTCCACCGAGTGGCGCAGCAGATCCAGCACCTTT
TCATTGTTTTTCAGGCAGGACTGGCGCACGGGTCCGATGAAGGGCGCCTT
GGGCACCAGCTTCAGATCGTCGTGTATGAAGGAGCCCAGGCTGAGTGTTC
CCACTGGAAGGCGGGCCATTGCCTGCTCGAAGATCAGCATTTGATCGAAT
TCCTTGGAGTTGTG
BS13256.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4623-PA | 984 | CG4623-RA | 337..984 | 664..17 | 3240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:25:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4623-RB | 1594 | CG4623-RB | 686..1333 | 664..17 | 3240 | 100 | Minus |
CG4623-RA | 1597 | CG4623-RA | 689..1336 | 664..17 | 3240 | 100 | Minus |
CG4623-RC | 1511 | CG4623-RC | 689..1301 | 664..52 | 3065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5143563..5144056 | 510..17 | 2470 | 100 | Minus |
3L | 28110227 | 3L | 5143344..5143497 | 664..511 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:25:40 has no hits.
BS13256.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:00 Download gff for
BS13256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-PA | 337..984 | 17..664 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:54 Download gff for
BS13256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 689..1338 | 13..664 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:37:16 Download gff for
BS13256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 689..1338 | 13..664 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:37:16 Download gff for
BS13256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5143344..5143497 | 511..664 | 100 | -> | Minus |
3L | 5143563..5144058 | 13..510 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:54 Download gff for
BS13256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5136444..5136597 | 511..664 | 100 | -> | Minus |
arm_3L | 5136663..5137158 | 13..510 | 99 | | Minus |
BS13256.5prime Sequence
682 bp (630 high quality bases) assembled on 2006-10-13
> BS13256.5prime
GAAGTTATCAGTCGACATGAGCGAGCAGACAAAGGAAATCGAAGCTCTGC
CGCCCACCTTGCAGGACTTCAAGGCTCCCGATCTGCCGGCCAATAAGCCA
GTGCTCTTCTTCCATCCGTACAACTTCCATGCGCAAAAAGTTCTTATGGT
CTTCTACGAGAAGAAGATCGACTTCTTTCCCTATGTGGTGGACCTGTGCA
ATGGCGAGCAGTACTCCAATTGGTTCCTAAACCTCAATCCCAAGGGCGAT
GTGCCAGTGCTCCAGGATGGCGCCCTCGTCATTCCCAGCTCGACGCACAT
CATCAACTATGTGGAGAGCAAATTTCGCGGTGATCGATCGCTGAAGCCAG
CGCACAACTCCAAGGAATTCGATCAAATGCTGATCTTCGAGCAGGCAATG
GCCCGCCTTCCAGTGGGAACACTCAGCCTGGGCTCCTTCATACACGACGA
TCTGAAGCTGGTGCCCAAGGCGCCCTTCATCGGACCCGTGCGCCAGTCCT
GCCTGAAAAACAATGAAAAGGTGCTGGATCTGCTGCGCCACTCGGTGGAC
GAACAGGCGACCAAAAAAGCAGCGCTGCAGCACAAGCTGGACATACAGTT
GCGCCGCCACGAGCTGGCCTCGTCCCGCGAGGAATTCCAGAAGGTTCTGG
ATGCCGTGCGGCACTTTCTGCTCTATGTGGAG
BS13256.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4623-PA | 984 | CG4623-RA | 1..666 | 17..682 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4623-RC | 1511 | CG4623-RC | 353..1018 | 17..682 | 3330 | 100 | Plus |
CG4623-RA | 1597 | CG4623-RA | 353..1018 | 17..682 | 3330 | 100 | Plus |
CG4623-RB | 1594 | CG4623-RB | 353..1015 | 17..682 | 3275 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:46:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5143073..5143265 | 140..332 | 965 | 100 | Plus |
3L | 28110227 | 3L | 5143563..5143738 | 507..682 | 880 | 100 | Plus |
3L | 28110227 | 3L | 5143323..5143497 | 332..506 | 875 | 100 | Plus |
3L | 28110227 | 3L | 5142305..5142430 | 17..142 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:46:59 has no hits.
BS13256.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:00 Download gff for
BS13256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-PA | 1..666 | 17..682 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:45:55 Download gff for
BS13256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 353..1018 | 17..682 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:04:37 Download gff for
BS13256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 353..1018 | 17..682 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:04:37 Download gff for
BS13256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5142305..5142427 | 17..139 | 100 | -> | Plus |
3L | 5143073..5143265 | 140..332 | 100 | -> | Plus |
3L | 5143324..5143497 | 333..506 | 100 | -> | Plus |
3L | 5143563..5143738 | 507..682 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:45:55 Download gff for
BS13256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5135405..5135527 | 17..139 | 100 | -> | Plus |
arm_3L | 5136173..5136365 | 140..332 | 100 | -> | Plus |
arm_3L | 5136424..5136597 | 333..506 | 100 | -> | Plus |
arm_3L | 5136663..5136838 | 507..682 | 100 | | Plus |
BS13256.complete Sequence
1016 bp assembled on 2006-11-01
GenBank Submission: FJ637405
> BS13256.complete
GAAGTTATCAGTCGACATGAGCGAGCAGACAAAGGAAATCGAAGCTCTGC
CGCCCACCTTGCAGGACTTCAAGGCTCCCGATCTGCCGGCCAATAAGCCA
GTGCTCTTCTTCCATCCGTACAACTTCCATGCGCAAAAAGTTCTTATGGT
CTTCTACGAGAAGAAGATCGACTTCTTTCCCTATGTGGTGGACCTGTGCA
ATGGCGAGCAGTACTCCAATTGGTTCCTAAACCTCAATCCCAAGGGCGAT
GTGCCAGTGCTCCAGGATGGCGCCCTCGTCATTCCCAGCTCGACGCACAT
CATCAACTATGTGGAGAGCAAATTTCGCGGTGATCGATCGCTGAAGCCAG
CGCACAACTCCAAGGAATTCGATCAAATGCTGATCTTCGAGCAGGCAATG
GCCCGCCTTCCAGTGGGAACACTCAGCCTGGGCTCCTTCATACACGACGA
TCTGAAGCTGGTGCCCAAGGCGCCCTTCATCGGACCCGTGCGCCAGTCCT
GCCTGAAAAACAATGAAAAGGTGCTGGATCTGCTGCGCCACTCGGTGGAC
GAACAGGCGACCAAAAAAGCAGCGCTGCAGCACAAGCTGGACATACAGTT
GCGCCGCCACGAGCTGGCCTCGTCCCGCGAGGAATTCCAGAAGGTTCTGG
ATGCCGTGCGGCACTTTCTGCTCTATGTGGAGCAGGAGCTAACCGCCCAG
GCGCCACGCGTTGAGTGGCTGACCGGCGACGAACTGAGCGTGGCGGATAT
CTCGCTGGGATTGCTGCTGCATCGACTGTATCAGCTGGGATTCGAGAATC
AGTTCTGGACCTTCGGAAAGCTGCCGCAGGTGGAGGCATACTTCTTGCGC
TTCCGGCAGCGCGAGTCCTTCCACCGCCTGCAGCCGAGCAACTTTGCCAT
ACTGCGCGAAATGTGGACCCGAACGCCGGGCAACTATAAGCTAGGAGCGG
GCGCCGGCTTCCTGGGTATGGCCATGTTCGCCGCCTTCGCGCACAAGTGA
AAGCTTTCTAGACCAT
BS13256.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:58:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4623-RA | 984 | CG4623-PA | 1..984 | 17..1000 | 4920 | 100 | Plus |
CG4623-RB | 981 | CG4623-PB | 1..981 | 17..1000 | 4840 | 99.7 | Plus |
CG4623-RC | 963 | CG4623-PC | 1..949 | 17..965 | 4745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4623-RA | 1597 | CG4623-RA | 353..1336 | 17..1000 | 4920 | 100 | Plus |
CG4623-RB | 1594 | CG4623-RB | 353..1333 | 17..1000 | 4840 | 99.7 | Plus |
CG4623-RC | 1511 | CG4623-RC | 353..1301 | 17..965 | 4745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5143563..5144056 | 507..1000 | 2470 | 100 | Plus |
3L | 28110227 | 3L | 5143073..5143265 | 140..332 | 965 | 100 | Plus |
3L | 28110227 | 3L | 5143323..5143497 | 332..506 | 875 | 100 | Plus |
3L | 28110227 | 3L | 5142305..5142430 | 17..142 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:58:28 has no hits.
BS13256.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:03 Download gff for
BS13256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 1..984 | 17..1000 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:53 Download gff for
BS13256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 351..1336 | 17..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:44 Download gff for
BS13256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 353..1335 | 17..999 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:04 Download gff for
BS13256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 351..1336 | 17..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:58 Download gff for
BS13256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 353..1335 | 17..999 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:58 Download gff for
BS13256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5143324..5143497 | 333..506 | 100 | -> | Plus |
3L | 5142305..5142427 | 17..139 | 100 | -> | Plus |
3L | 5143073..5143265 | 140..332 | 100 | -> | Plus |
3L | 5143563..5144055 | 507..999 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:44 Download gff for
BS13256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5136424..5136597 | 333..506 | 100 | -> | Plus |
arm_3L | 5135405..5135527 | 17..139 | 100 | -> | Plus |
arm_3L | 5136173..5136365 | 140..332 | 100 | -> | Plus |
arm_3L | 5136663..5137155 | 507..999 | 100 | | Plus |
BS13256.pep Sequence
Translation from 16 to 999
> BS13256.pep
MSEQTKEIEALPPTLQDFKAPDLPANKPVLFFHPYNFHAQKVLMVFYEKK
IDFFPYVVDLCNGEQYSNWFLNLNPKGDVPVLQDGALVIPSSTHIINYVE
SKFRGDRSLKPAHNSKEFDQMLIFEQAMARLPVGTLSLGSFIHDDLKLVP
KAPFIGPVRQSCLKNNEKVLDLLRHSVDEQATKKAALQHKLDIQLRRHEL
ASSREEFQKVLDAVRHFLLYVEQELTAQAPRVEWLTGDELSVADISLGLL
LHRLYQLGFENQFWTFGKLPQVEAYFLRFRQRESFHRLQPSNFAILREMW
TRTPGNYKLGAGAGFLGMAMFAAFAHK*
BS13256.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4623-PA | 327 | CG4623-PA | 1..327 | 1..327 | 1713 | 100 | Plus |
CG4623-PB | 326 | CG4623-PB | 1..326 | 1..327 | 1695 | 99.7 | Plus |
CG4623-PC | 320 | CG4623-PC | 1..316 | 1..316 | 1656 | 100 | Plus |