Clone BS13257 Report

Search the DGRC for BS13257

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptGapdh1-RA
Protein status:BS13257.pep: full length peptide match
Sequenced Size:1031

Clone Sequence Records

BS13257.3prime Sequence

815 bp (700 high quality bases) assembled on 2006-10-13

> BS13257.3prime
ATGGTCTAGAAAGCTTTTAGTCCTTGCTCTGCATATACTTGATCAGGTCG
ATGACGCGGTTGGAGTAACCGAACTCGTTGTCGTACCACGAGATTAGCTT
GACGAACTTATCGTTCAGCGAAATGCCAGCCTTGGCGTCGAACACAGACG
AATGGGTGTCGCTGAAGAAGTCGGTGGAGACCACCTCCTCATCGGTGTAG
CCCAGGATTCCCTTCAGGGGTCCCTTGGAGGCCTCCTCGACCTTAGCCTT
GATTTCGTCATAGGTGGCTCCCTTGCCCAAGCGGACGGTAAGATCCACAA
CGGAGACATTGGGCGTGGGCACGCGGAAAGCCATGCCGGTCAGCTTGCCG
TTCAGGGCGGGGATGACCTTGCCCACAGCCTTGGCGGCTCCGGTGGCGGC
CGGGATGATGTTCTGGGCGGCGCCACGTCCATCGCGCCACAGTTTGCCAG
AGGGACCGTCGACGGTCTTCTGGGTGGCAGTGGTGGCGTGCACGGTGGTC
ATCAGACCCTCGACGATCTCGAAGTTGTCATTGATGACCTTGGCCAGGGG
AGCCAGGCAGTTGGTGGTGCACGAGGCGTTGGAGACCACCTTCATGTCGG
GGCTGTAGGCGTCCAGGTTAACGCCGCACACGAACATGGGCGCATCGGCG
GATGGGGCCGAGATGATGACCTTCTTGGCGCCGCCCTTCAAGTGGGTGGA
CGCCTTGTCAATGGTGGTGAACACTCCGGTGGACTCCACCACATACTCGG
CTCCAGCACTGGGCCCAGTGATGGTGGCCGGGTCGCGCTCGCTGAACACG
GTGATCTTCTGGCCG

BS13257.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12055-PA 999 Gapdh1-RA 201..999 815..17 3895 99.6 Minus
CG12055-PB 999 Gapdh1-RB 201..999 815..17 3895 99.6 Minus
CG8893-PA 999 Gapdh2-RA 277..557 739..459 830 91.8 Minus
CG8893-PB 999 Gapdh2-RB 277..557 739..459 830 91.8 Minus
CG8893-PA 999 Gapdh2-RA 727..995 289..21 620 89.2 Minus
CG8893-PB 999 Gapdh2-RB 727..995 289..21 620 89.2 Minus
CG8893-PA 999 Gapdh2-RA 625..707 391..309 165 87.9 Minus
CG8893-PB 999 Gapdh2-RB 625..707 391..309 165 87.9 Minus
CG8893-PA 999 Gapdh2-RA 201..247 815..769 160 93.6 Minus
CG8893-PB 999 Gapdh2-RB 201..247 815..769 160 93.6 Minus
CG8893-PA 999 Gapdh2-RA 575..611 441..405 135 94.5 Minus
CG8893-PB 999 Gapdh2-RB 575..611 441..405 135 94.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
Gapdh1-RB 1330 CG12055-RB 311..1110 815..16 3940 99.6 Minus
Gapdh1-RA 1480 CG12055-RA 461..1260 815..16 3940 99.6 Minus
Gapdh2-RC 1377 CG8893-RC 252..1051 815..16 2590 88.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7792121..7792920 16..815 3925 99.4 Plus
X 23542271 X 15868536..15869335 815..16 2575 88.1 Minus
2R 25286936 2R 16959364..16959756 287..679 405 73.5 Plus
Blast to na_te.dros performed on 2015-02-13 15:56:29 has no hits.

BS13257.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:00 Download gff for BS13257.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12055-PB 201..999 17..815 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:47:28 Download gff for BS13257.3prime
Subject Subject Range Query Range Percent Splice Strand
Gapdh1-RA 461..1262 12..815 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:20:41 Download gff for BS13257.3prime
Subject Subject Range Query Range Percent Splice Strand
Gapdh1-RA 461..1262 12..815 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:20:41 Download gff for BS13257.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7792119..7792920 12..815 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:47:28 Download gff for BS13257.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3679624..3680425 12..815 99   Plus

BS13257.complete Sequence

1031 bp assembled on 2010-07-02

GenBank Submission: KX803572

> BS13257.complete
GAAGTTATCAGTCGACATGTCGAAGATCGGAATTAACGGATTTGGCCGCA
TCGGCCGCTTGGTGCTCCGCGCCGCCATCGATAAGGGCGCCTCCGTGGTG
GCCGTCAACGATCCCTTCATCGATGTCAACTACATGGTTTACCTGTTTAA
ATTCGACTCGACTCACGGTCGTTTCAAGGGCACCGTTGCGGCTGAGGGCG
GATTCCTGGTGGTGAACGGCCAGAAGATCACCGTGTTCAGCGAGCGCGAC
CCGGCCAACATCAACTGGGCCAGTGCTGGAGCCGAGTATGTGGTGGAGTC
CACCGGAGTGTTCACCACCATTGACAAGGCGTCCACCCACTTGAAGGGCG
GCGCCAAGAAGGTCATCATCTCGGCCCCATCCGCCGATGCGCCCATGTTC
GTGTGCGGCGTTAACCTGGACGCCTACAGCCCCGACATGAAGGTGGTCTC
CAACGCCTCGTGCACCACCAACTGCCTGGCTCCCCTGGCCAAGGTCATCA
ATGACAACTTCGAGATCGTCGAGGGTCTGATGACCACCGTGCACGCCACC
ACTGCCACCCAGAAGACCGTCGACGGTCCCTCTGGCAAACTGTGGCGCGA
TGGACGTGGCGCCGCCCAGAACATCATCCCGGCCGCCACCGGAGCCGCCA
AGGCTGTGGGCAAGGTCATCCCCGCCCTGAACGGCAAGCTGACCGGCATG
GCTTTCCGCGTGCCCACGCCCAATGTCTCCGTTGTGGATCTTACCGTCCG
CTTGGGCAAGGGAGCCACCTATGACGAAATCAAGGCTAAGGTCGAGGAGG
CCTCCAAGGGACCCCTGAAGGGAATCCTGGGCTACACCGATGAGGAGGTG
GTCTCCACCGACTTCTTCAGCGACACCCATTCGTCTGTGTTCGACGCCAA
GGCTGGCATTTCGCTGAACGATAAGTTCGTCAAGCTAATCTCGTGGTACG
ACAACGAGTTCGGTTACTCCAACCGCGTCATCGACCTGATCAAGTATATG
CAGAGCAAGGACTAAAAGCTTTCTAGACCAT

BS13257.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
Gapdh1-RB 999 CG12055-PB 1..999 17..1015 4995 100 Plus
Gapdh1-RA 999 CG12055-PA 1..999 17..1015 4995 100 Plus
Gapdh2-RC 999 CG8893-PC 1..999 17..1015 3315 88.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
Gapdh1-RB 1330 CG12055-RB 110..1110 16..1016 5005 100 Plus
Gapdh1-RA 1480 CG12055-RA 260..1260 16..1016 5005 100 Plus
Gapdh2-RC 1377 CG8893-RC 51..1051 16..1016 3325 88.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7792121..7793121 1016..16 5005 100 Minus
X 23542271 X 15868335..15869335 16..1016 3325 88.8 Plus
2R 25286936 2R 16959364..16959756 745..353 405 73.5 Minus
Blast to na_te.dros performed on 2014-11-28 02:20:37 has no hits.

BS13257.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:50 Download gff for BS13257.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh1-RB 63..1059 17..1013 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:01 Download gff for BS13257.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh1-RA 261..1257 17..1013 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:11 Download gff for BS13257.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh1-RA 261..1257 17..1013 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:11 Download gff for BS13257.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7792124..7793120 17..1013 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:01 Download gff for BS13257.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3679629..3680625 17..1013 100   Minus

BS13257.pep Sequence

Translation from 16 to 1014

> BS13257.pep
MSKIGINGFGRIGRLVLRAAIDKGASVVAVNDPFIDVNYMVYLFKFDSTH
GRFKGTVAAEGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFT
TIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYSPDMKVVSNASCT
TNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAA
QNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGA
TYDEIKAKVEEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISL
NDKFVKLISWYDNEFGYSNRVIDLIKYMQSKD*

BS13257.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
Gapdh1-PB 332 CG12055-PB 1..332 1..332 1697 100 Plus
Gapdh1-PA 332 CG12055-PA 1..332 1..332 1697 100 Plus
Gapdh2-PC 332 CG8893-PC 1..332 1..332 1665 97.3 Plus
Gapdh2-PA 332 CG8893-PA 1..332 1..332 1665 97.3 Plus
CG9010-PA 343 CG9010-PA 1..333 1..332 1114 65.2 Plus