Clone Sequence Records
BS13257.3prime Sequence
815 bp (700 high quality bases) assembled on 2006-10-13
> BS13257.3prime
ATGGTCTAGAAAGCTTTTAGTCCTTGCTCTGCATATACTTGATCAGGTCG
ATGACGCGGTTGGAGTAACCGAACTCGTTGTCGTACCACGAGATTAGCTT
GACGAACTTATCGTTCAGCGAAATGCCAGCCTTGGCGTCGAACACAGACG
AATGGGTGTCGCTGAAGAAGTCGGTGGAGACCACCTCCTCATCGGTGTAG
CCCAGGATTCCCTTCAGGGGTCCCTTGGAGGCCTCCTCGACCTTAGCCTT
GATTTCGTCATAGGTGGCTCCCTTGCCCAAGCGGACGGTAAGATCCACAA
CGGAGACATTGGGCGTGGGCACGCGGAAAGCCATGCCGGTCAGCTTGCCG
TTCAGGGCGGGGATGACCTTGCCCACAGCCTTGGCGGCTCCGGTGGCGGC
CGGGATGATGTTCTGGGCGGCGCCACGTCCATCGCGCCACAGTTTGCCAG
AGGGACCGTCGACGGTCTTCTGGGTGGCAGTGGTGGCGTGCACGGTGGTC
ATCAGACCCTCGACGATCTCGAAGTTGTCATTGATGACCTTGGCCAGGGG
AGCCAGGCAGTTGGTGGTGCACGAGGCGTTGGAGACCACCTTCATGTCGG
GGCTGTAGGCGTCCAGGTTAACGCCGCACACGAACATGGGCGCATCGGCG
GATGGGGCCGAGATGATGACCTTCTTGGCGCCGCCCTTCAAGTGGGTGGA
CGCCTTGTCAATGGTGGTGAACACTCCGGTGGACTCCACCACATACTCGG
CTCCAGCACTGGGCCCAGTGATGGTGGCCGGGTCGCGCTCGCTGAACACG
GTGATCTTCTGGCCG
BS13257.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:47:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12055-PA | 999 | Gapdh1-RA | 201..999 | 815..17 | 3895 | 99.6 | Minus |
CG12055-PB | 999 | Gapdh1-RB | 201..999 | 815..17 | 3895 | 99.6 | Minus |
CG8893-PA | 999 | Gapdh2-RA | 277..557 | 739..459 | 830 | 91.8 | Minus |
CG8893-PB | 999 | Gapdh2-RB | 277..557 | 739..459 | 830 | 91.8 | Minus |
CG8893-PA | 999 | Gapdh2-RA | 727..995 | 289..21 | 620 | 89.2 | Minus |
CG8893-PB | 999 | Gapdh2-RB | 727..995 | 289..21 | 620 | 89.2 | Minus |
CG8893-PA | 999 | Gapdh2-RA | 625..707 | 391..309 | 165 | 87.9 | Minus |
CG8893-PB | 999 | Gapdh2-RB | 625..707 | 391..309 | 165 | 87.9 | Minus |
CG8893-PA | 999 | Gapdh2-RA | 201..247 | 815..769 | 160 | 93.6 | Minus |
CG8893-PB | 999 | Gapdh2-RB | 201..247 | 815..769 | 160 | 93.6 | Minus |
CG8893-PA | 999 | Gapdh2-RA | 575..611 | 441..405 | 135 | 94.5 | Minus |
CG8893-PB | 999 | Gapdh2-RB | 575..611 | 441..405 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:56:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gapdh1-RB | 1330 | CG12055-RB | 311..1110 | 815..16 | 3940 | 99.6 | Minus |
Gapdh1-RA | 1480 | CG12055-RA | 461..1260 | 815..16 | 3940 | 99.6 | Minus |
Gapdh2-RC | 1377 | CG8893-RC | 252..1051 | 815..16 | 2590 | 88.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:56:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7792121..7792920 | 16..815 | 3925 | 99.4 | Plus |
X | 23542271 | X | 15868536..15869335 | 815..16 | 2575 | 88.1 | Minus |
2R | 25286936 | 2R | 16959364..16959756 | 287..679 | 405 | 73.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:56:29 has no hits.
BS13257.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:00 Download gff for
BS13257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12055-PB | 201..999 | 17..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:47:28 Download gff for
BS13257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gapdh1-RA | 461..1262 | 12..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:20:41 Download gff for
BS13257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gapdh1-RA | 461..1262 | 12..815 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:20:41 Download gff for
BS13257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7792119..7792920 | 12..815 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:47:28 Download gff for
BS13257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3679624..3680425 | 12..815 | 99 | | Plus |
BS13257.complete Sequence
1031 bp assembled on 2010-07-02
GenBank Submission: KX803572
> BS13257.complete
GAAGTTATCAGTCGACATGTCGAAGATCGGAATTAACGGATTTGGCCGCA
TCGGCCGCTTGGTGCTCCGCGCCGCCATCGATAAGGGCGCCTCCGTGGTG
GCCGTCAACGATCCCTTCATCGATGTCAACTACATGGTTTACCTGTTTAA
ATTCGACTCGACTCACGGTCGTTTCAAGGGCACCGTTGCGGCTGAGGGCG
GATTCCTGGTGGTGAACGGCCAGAAGATCACCGTGTTCAGCGAGCGCGAC
CCGGCCAACATCAACTGGGCCAGTGCTGGAGCCGAGTATGTGGTGGAGTC
CACCGGAGTGTTCACCACCATTGACAAGGCGTCCACCCACTTGAAGGGCG
GCGCCAAGAAGGTCATCATCTCGGCCCCATCCGCCGATGCGCCCATGTTC
GTGTGCGGCGTTAACCTGGACGCCTACAGCCCCGACATGAAGGTGGTCTC
CAACGCCTCGTGCACCACCAACTGCCTGGCTCCCCTGGCCAAGGTCATCA
ATGACAACTTCGAGATCGTCGAGGGTCTGATGACCACCGTGCACGCCACC
ACTGCCACCCAGAAGACCGTCGACGGTCCCTCTGGCAAACTGTGGCGCGA
TGGACGTGGCGCCGCCCAGAACATCATCCCGGCCGCCACCGGAGCCGCCA
AGGCTGTGGGCAAGGTCATCCCCGCCCTGAACGGCAAGCTGACCGGCATG
GCTTTCCGCGTGCCCACGCCCAATGTCTCCGTTGTGGATCTTACCGTCCG
CTTGGGCAAGGGAGCCACCTATGACGAAATCAAGGCTAAGGTCGAGGAGG
CCTCCAAGGGACCCCTGAAGGGAATCCTGGGCTACACCGATGAGGAGGTG
GTCTCCACCGACTTCTTCAGCGACACCCATTCGTCTGTGTTCGACGCCAA
GGCTGGCATTTCGCTGAACGATAAGTTCGTCAAGCTAATCTCGTGGTACG
ACAACGAGTTCGGTTACTCCAACCGCGTCATCGACCTGATCAAGTATATG
CAGAGCAAGGACTAAAAGCTTTCTAGACCAT
BS13257.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gapdh1-RB | 999 | CG12055-PB | 1..999 | 17..1015 | 4995 | 100 | Plus |
Gapdh1-RA | 999 | CG12055-PA | 1..999 | 17..1015 | 4995 | 100 | Plus |
Gapdh2-RC | 999 | CG8893-PC | 1..999 | 17..1015 | 3315 | 88.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gapdh1-RB | 1330 | CG12055-RB | 110..1110 | 16..1016 | 5005 | 100 | Plus |
Gapdh1-RA | 1480 | CG12055-RA | 260..1260 | 16..1016 | 5005 | 100 | Plus |
Gapdh2-RC | 1377 | CG8893-RC | 51..1051 | 16..1016 | 3325 | 88.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7792121..7793121 | 1016..16 | 5005 | 100 | Minus |
X | 23542271 | X | 15868335..15869335 | 16..1016 | 3325 | 88.8 | Plus |
2R | 25286936 | 2R | 16959364..16959756 | 745..353 | 405 | 73.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:20:37 has no hits.
BS13257.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:50 Download gff for
BS13257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gapdh1-RB | 63..1059 | 17..1013 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:01 Download gff for
BS13257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gapdh1-RA | 261..1257 | 17..1013 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:11 Download gff for
BS13257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gapdh1-RA | 261..1257 | 17..1013 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:11 Download gff for
BS13257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7792124..7793120 | 17..1013 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:01 Download gff for
BS13257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3679629..3680625 | 17..1013 | 100 | | Minus |
BS13257.pep Sequence
Translation from 16 to 1014
> BS13257.pep
MSKIGINGFGRIGRLVLRAAIDKGASVVAVNDPFIDVNYMVYLFKFDSTH
GRFKGTVAAEGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFT
TIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYSPDMKVVSNASCT
TNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAA
QNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGA
TYDEIKAKVEEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISL
NDKFVKLISWYDNEFGYSNRVIDLIKYMQSKD*
BS13257.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gapdh1-PB | 332 | CG12055-PB | 1..332 | 1..332 | 1697 | 100 | Plus |
Gapdh1-PA | 332 | CG12055-PA | 1..332 | 1..332 | 1697 | 100 | Plus |
Gapdh2-PC | 332 | CG8893-PC | 1..332 | 1..332 | 1665 | 97.3 | Plus |
Gapdh2-PA | 332 | CG8893-PA | 1..332 | 1..332 | 1665 | 97.3 | Plus |
CG9010-PA | 343 | CG9010-PA | 1..333 | 1..332 | 1114 | 65.2 | Plus |