Clone BS13258 Report

Search the DGRC for BS13258

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptGstE2-RA
Protein status:BS13258.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13258.3prime Sequence

508 bp (505 high quality bases) assembled on 2006-10-13

> BS13258.3prime
ATGGTCTAGAAAGCTTCTATTGCTCCAGATTTAATACGGGTTTCAATAAA
TTGATATACTTCTTCAAGCCCCGCAGATTGTCTTCCTCATAGTGGGGCAA
CTTAGAGAGTCGTTCGAACCAAGCAGCCACCTTTGGATACTTTAACTCAT
CCAGGTCAAGAACAGCGGCCAGCGAGGATGCAGTAGCTCCGCAGCATAAA
TCAGCTATGGTCAGTTGCGACCCGGTCAAATAGGGATTATCCCCTAGAAA
GTTCTCCAAATGGCCATATGCATCTTTAATGTTGTCCACCTTCTCCTTGG
GTACCAGGCTTACTTGGCGAAGAAAATAGGGTATACTGACATTTCGCAGC
GACATAAACAGAATGCTGGCATCAAAGAACAAACGCTGATCCACCTGGGC
GCGCAACACCAGATCCCTGGGATATAGCTCATCCGAATTGGCATACTTGT
CCACCAGGTAGCATACAATAGCATGTGAATCCCAGATAAGGGCACCATTA
TCTTCGAG

BS13258.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17523-PA 666 GstE2-RA 175..666 508..17 2410 99.5 Minus
CG5164-PA 675 GstE1-RA 230..277 456..409 165 93.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
GstE2-RA 890 CG17523-RA 213..704 508..17 2430 99.6 Minus
GstE1-RA 831 CG5164-RA 217..359 508..366 250 78.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18399698..18400189 508..17 2430 99.6 Minus
2R 25286936 2R 18398609..18398751 508..366 250 78.3 Minus
Blast to na_te.dros performed on 2015-02-10 17:40:05 has no hits.

BS13258.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:01 Download gff for BS13258.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17523-PA 175..666 17..508 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:27:20 Download gff for BS13258.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE2-RA 213..713 7..508 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:31 Download gff for BS13258.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE2-RA 213..713 7..508 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:31 Download gff for BS13258.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18399698..18400198 7..508 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:27:20 Download gff for BS13258.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14287203..14287703 7..508 98   Minus

BS13258.5prime Sequence

586 bp (549 high quality bases) assembled on 2006-10-13

> BS13258.5prime
GAAGTTATCAGTCGACATGTCGGATAAATTGGTTTTGTATGGCATGGATA
TTAGTCCTCCTGTTCGCGCTTGCAAGCTGACCTTGCGGGCCTTAAACTTG
GACTACGAATACAAGGAAATGGATCTACTGGCAGGAGATCACTTTAAGGA
TGCGTTCCTCAAAAAGAACCCGCAGCACACCGTACCACTCCTCGAAGATA
ATGGTGCCCTTATCTGGGATTCACATGCTATTGTATGCTACCTGGTGGAC
AAGTATGCCAATTCGGATGAGCTATATCCCAGGGATCTGGTGTTGCGCGC
CCAGGTGGATCAGCGTTTGTTCTTTGATGCCAGCATTCTGTTTATGTCGC
TGCGAAATGTCAGTATACCCTATTTTCTTCGCCAAGTAAGCCTGGTACCC
AAGGAGAAGGTGGACAACATTAAAGATGCATATGGCCATTTGGAGAACTT
TCTAGGGGATAATCCCTATTTGACCGGGTCGCAACTGACCATAGCTGATT
TATGCTGCGGAGCTACTGCATCCTCGCTGGCCGCTGTTCTTGACCTGAAT
GAGTTAAAGTATCCCAAGGTGGCTGCTTGGTTCGAA

BS13258.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17523-PA 666 GstE2-RA 1..570 17..586 2750 99.2 Plus
CG5164-PA 675 GstE1-RA 230..277 243..290 165 93.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
GstE2-RA 890 CG17523-RA 38..608 16..586 2795 99.3 Plus
GstE1-RA 831 CG5164-RA 125..359 99..333 290 74.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18399523..18400093 16..586 2795 99.3 Plus
2R 25286936 2R 18398517..18398751 99..333 290 74.9 Plus
Blast to na_te.dros performed on 2015-02-12 04:07:04 has no hits.

BS13258.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:02 Download gff for BS13258.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17523-PA 1..568 17..584 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:35:03 Download gff for BS13258.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE2-RA 31..608 7..586 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:15 Download gff for BS13258.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE2-RA 31..608 7..586 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:15 Download gff for BS13258.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18399516..18400093 7..586 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:35:03 Download gff for BS13258.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14287021..14287598 7..586 98   Plus

BS13258.complete Sequence

698 bp assembled on 2006-11-01

GenBank Submission: FJ637406

> BS13258.complete
GAAGTTATCAGTCGACATGTCGGATAAATTGGTTTTGTATGGCATGGATA
TTAGTCCTCCTGTTCGCGCTTGCAAGCTGACCTTGCGGGCCTTAAACTTG
GACTACGAATACAAGGAAATGGATCTACTGGCAGGAGATCACTTTAAGGA
TGCGTTCCTCAAAAAGAACCCGCAGCACACCGTACCACTCCTCGAAGATA
ATGGTGCCCTTATCTGGGATTCACATGCTATTGTATGCTACCTGGTGGAC
AAGTATGCCAATTCGGATGAGCTATATCCCAGGGATCTGGTGTTGCGCGC
CCAGGTGGATCAGCGTTTGTTCTTTGATGCCAGCATTCTGTTTATGTCGC
TGCGAAATGTCAGTATACCCTATTTTCTTCGCCAAGTAAGCCTGGTACCC
AAGGAGAAGGTGGACAACATTAAAGATGCATATGGCCATTTGGAGAACTT
TCTAGGGGATAATCCCTATTTGACCGGGTCGCAACTGACCATAGCTGATT
TATGCTGCGGAGCTACTGCATCCTCGCTGGCCGCTGTTCTTGACCTGGAT
GAGTTAAAGTATCCAAAGGTGGCTGCTTGGTTCGAACGACTCTCTAAGTT
GCCCCACTATGAGGAAGACAATCTGCGGGGCTTGAAGAAGTATATCAATT
TATTGAAACCCGTATTAAATCTGGAGCAATAGAAGCTTTCTAGACCAT

BS13258.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
GstE2-RA 666 CG17523-PA 1..666 17..682 3300 99.7 Plus
GstE1-RA 675 CG5164-PA 86..320 99..333 290 74.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
GstE2-RA 890 CG17523-RA 38..704 16..682 3305 99.7 Plus
GstE1-RA 831 CG5164-RA 125..359 99..333 290 74.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18399523..18400189 16..682 3305 99.7 Plus
2R 25286936 2R 18398517..18398751 99..333 290 74.9 Plus
Blast to na_te.dros performed on 2014-11-28 00:14:08 has no hits.

BS13258.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:05 Download gff for BS13258.complete
Subject Subject Range Query Range Percent Splice Strand
GstE2-RA 1..666 17..682 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:54 Download gff for BS13258.complete
Subject Subject Range Query Range Percent Splice Strand
GstE2-RA 29..711 7..692 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:31 Download gff for BS13258.complete
Subject Subject Range Query Range Percent Splice Strand
GstE2-RA 39..704 17..682 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:05 Download gff for BS13258.complete
Subject Subject Range Query Range Percent Splice Strand
GstE2-RA 29..711 7..692 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:22 Download gff for BS13258.complete
Subject Subject Range Query Range Percent Splice Strand
GstE2-RA 39..704 17..682 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:22 Download gff for BS13258.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18399524..18400189 17..682 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:31 Download gff for BS13258.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14287029..14287694 17..682 99   Plus

BS13258.pep Sequence

Translation from 16 to 681

> BS13258.pep
MSDKLVLYGMDISPPVRACKLTLRALNLDYEYKEMDLLAGDHFKDAFLKK
NPQHTVPLLEDNGALIWDSHAIVCYLVDKYANSDELYPRDLVLRAQVDQR
LFFDASILFMSLRNVSIPYFLRQVSLVPKEKVDNIKDAYGHLENFLGDNP
YLTGSQLTIADLCCGATASSLAAVLDLDELKYPKVAAWFERLSKLPHYEE
DNLRGLKKYINLLKPVLNLEQ*

BS13258.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
GstE2-PA 221 CG17523-PA 1..221 1..221 1152 100 Plus
GstE1-PA 224 CG5164-PA 3..215 2..214 652 56.3 Plus
GstE7-PA 223 CG17531-PA 3..214 4..214 582 51.4 Plus
GstE10-PB 240 CG17522-PB 4..208 5..207 569 54.6 Plus
GstE10-PA 240 CG17522-PA 4..208 5..207 569 54.6 Plus