Clone Sequence Records
BS13260.3prime Sequence
609 bp (569 high quality bases) assembled on 2006-10-13
> BS13260.3prime
ATGGTCTAGAAAGCTTCTACCAAGGTCGCCACACCACCATTCGCTGCTGC
ACCAGCTCCGCCAACTGGCGCTGCCTCTGCCGCTTTCTCTCGAAGATCTG
GTGGCGAATCTTCAGCAGGATGCTATCACGTGGCGCCTGCCCAGTTGCTC
CGTGGGATTTGGCGGGCGAGGATTGCTGCAGCTGCTCTATGAACTCGAGG
TCCATCTCGTGCGGCGGCGCTGCAAAGTGCTCCTTCTCCGGCATCTGCTC
CTGATCGTTATCCTGATCGATGGCCAGATTGCATTGGTACTGCAGCTTGA
AACGCTGACGCTTTTTTCGCGCCGCATTCTCGGCTAGAAATCTGCACAGC
TGCTGTAATTGCTGCTCGGCCAGCTCCTCCTTATCCTTGTCGATGTGATT
CTGGACCTGGTTCTGATCCTGATCCGGCTGCTGGTCCCGCTCCCGATCCC
GATCCCGCTCCTCCACCATGTGATCCTCAAGGCGGCGCTGCTGCTGGCGC
TGCTTGATGGCCGCCTGCACCTTGCACCTGGTGGCCGAGCTCAGGCTGAG
ATCCATGCTGCGTTGCTGCTTCAGTATCTTGTAGATGACGCCCCTGTCAA
CTGATAACT
BS13260.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15064-PA | 579 | Him-RA | 3..579 | 593..17 | 2885 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Him-RA | 920 | CG15064-RA | 110..686 | 593..17 | 2885 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:02:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18210212..18210507 | 312..17 | 1480 | 100 | Minus |
| X | 23542271 | X | 18209536..18209818 | 593..311 | 1415 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:02:43 has no hits.
BS13260.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:03 Download gff for
BS13260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15064-PA | 1..579 | 17..595 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:31:53 Download gff for
BS13260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-RA | 110..694 | 9..593 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:40 Download gff for
BS13260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-RA | 110..694 | 9..593 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:40 Download gff for
BS13260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18209536..18209818 | 311..593 | 100 | -> | Minus |
| X | 18210214..18210515 | 9..310 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:31:53 Download gff for
BS13260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18103569..18103851 | 311..593 | 100 | -> | Minus |
| arm_X | 18104247..18104548 | 9..310 | 98 | | Minus |
BS13260.5prime Sequence
604 bp (601 high quality bases) assembled on 2006-10-13
> BS13260.5prime
GAAGTTATCAGTCGACATGGGCGTCATCTACAAGATACTGAAGCAGCAAC
GCAGCATGGATCTCAGCCTGAGCTCGGCCACCAGGTGCAAGGTGCAGGCG
GCCATCAAGCAGCGCCAGCAGCAGCGCCGCCTTGAGGATCACATGGTGGA
GGAGCGGGATCGGGATCGGGAGCGGGACCAGCAGCCGGATCAGGATCAGA
ACCAGGTCCAGAATCACATCGACAAGGATAAGGAGGAGCTGGCCGAGCAG
CAATTACAGCAGCTGTGCAGATTTCTAGCCGAGAATGCGGCGCGAAAAAA
GCGTCAGCGTTTCAAGCTGCAGTACCAATGCAATCTGGCCATCGATCAGG
ATAACGATCAGGAGCAGATGCCGGAGAAGGAGCACTTTGCAGCGCCGCCG
CACGAGATGGACCTCGAGTTCATAGAGCAGCTGCAGCAATCCTCGCCCGC
CAAATCCCACGGAGCAACTGGGCAGGCGCCACGTGATAGCATCCTGCTGA
AGATTCGCCACCAGATCTTCGAGAGAAAGCGGCCAAGGCAGCGCCCGTTG
GCGGAGCTGGTGCAGCAACGAATGGTGGTGTGGCGACCTTGGTAGAAGCT
TTCT
BS13260.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15064-PA | 579 | Him-RA | 1..579 | 17..595 | 2795 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Him-RA | 920 | CG15064-RA | 108..686 | 17..595 | 2835 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18209534..18209818 | 17..301 | 1425 | 100 | Plus |
| X | 23542271 | X | 18210212..18210507 | 300..595 | 1420 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:59:49 has no hits.
BS13260.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:03 Download gff for
BS13260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15064-PA | 1..579 | 17..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:42:39 Download gff for
BS13260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-RA | 105..694 | 12..603 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:54 Download gff for
BS13260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-RA | 105..694 | 12..603 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:54 Download gff for
BS13260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18209531..18209818 | 12..301 | 99 | -> | Plus |
| X | 18210214..18210515 | 302..603 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:42:39 Download gff for
BS13260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18103564..18103851 | 12..301 | 99 | -> | Plus |
| arm_X | 18104247..18104548 | 302..603 | 97 | | Plus |
BS13260.complete Sequence
611 bp assembled on 2006-11-01
GenBank Submission: FJ637407
> BS13260.complete
GAAGTTATCAGTCGACATGGGCGTCATCTACAAGATACTGAAGCAGCAAC
GCAGCATGGATCTCAGCCTGAGCTCGGCCACCAGGTGCAAGGTGCAGGCG
GCCATCAAGCAGCGCCAGCAGCAGCGCCGCCTTGAGGATCACATGGTGGA
GGAGCGGGATCGGGATCGGGAGCGGGACCAGCAGCCGGATCAGGATCAGA
ACCAGGTCCAGAATCACATCGACAAGGATAAGGAGGAGCTGGCCGAGCAG
CAATTACAGCAGCTGTGCAGATTTCTAGCCGAGAATGCGGCGCGAAAAAA
GCGTCAGCGTTTCAAGCTGCAGTACCAATGCAATCTGGCCATCGATCAGG
ATAACGATCAGGAGCAGATGCCGGAGAAGGAGCACTTTGCAGCGCCGCCG
CACGAGATGGACCTCGAGTTCATAGAGCAGCTGCAGCAATCCTCGCCCGC
CAAATCCCACGGAGCAACTGGGCAGGCGCCACGTGATAGCATCCTGCTGA
AGATTCGCCACCAGATCTTCGAGAGAAAGCGGCAGAGGCAGCGCCAGTTG
GCGGAGCTGGTGCAGCAGCGAATGGTGGTGTGGCGACCTTGGTAGAAGCT
TTCTAGACCAT
BS13260.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Him-RA | 579 | CG15064-PA | 1..579 | 17..595 | 2895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Him-RA | 920 | CG15064-RA | 108..686 | 17..595 | 2895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18210212..18210507 | 300..595 | 1480 | 100 | Plus |
| X | 23542271 | X | 18209534..18209818 | 17..301 | 1425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:10:30 has no hits.
BS13260.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:47 Download gff for
BS13260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-RA | 1..579 | 17..595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:33 Download gff for
BS13260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-RA | 101..690 | 12..603 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:07 Download gff for
BS13260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-RA | 108..686 | 17..595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:47 Download gff for
BS13260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-RA | 101..690 | 12..603 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:33 Download gff for
BS13260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-RA | 108..686 | 17..595 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:33 Download gff for
BS13260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18209534..18209818 | 17..301 | 100 | -> | Plus |
| X | 18210214..18210507 | 302..595 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:07 Download gff for
BS13260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18103567..18103851 | 17..301 | 100 | -> | Plus |
| arm_X | 18104247..18104540 | 302..595 | 100 | | Plus |
BS13260.pep Sequence
Translation from 16 to 594
> BS13260.pep
MGVIYKILKQQRSMDLSLSSATRCKVQAAIKQRQQQRRLEDHMVEERDRD
RERDQQPDQDQNQVQNHIDKDKEELAEQQLQQLCRFLAENAARKKRQRFK
LQYQCNLAIDQDNDQEQMPEKEHFAAPPHEMDLEFIEQLQQSSPAKSHGA
TGQAPRDSILLKIRHQIFERKRQRQRQLAELVQQRMVVWRPW*
BS13260.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Him-PA | 192 | CG15064-PA | 1..192 | 1..192 | 993 | 100 | Plus |
