Clone Sequence Records
BS13262.5prime Sequence
543 bp (543 high quality bases) assembled on 2006-10-13
> BS13262.5prime
GAAGTTATCAGTCGACATGACACATCTGACAAAAAATTTCGCACGTCCAG
AAAAGAATGAGGAGGTTGTGACCTTCGGCAGTCTGGATCCGTCGGTTCAA
GAACTTCTGACAGCTGCTTTTCAAGTGCGCCAGCGGGCATACGTTCCATA
TAGTGGCTTCAAAGTTGGGGCTGCTTTTCGGGCCAAGGTCGATGGAAAGA
TCTTCACTGGCTGCAATGTGGAAAACGCCGCCTTTACGCCGGGCTCTTGT
GCCGAGAGAACGGCCATTGCTAAGGCCGTAAGCGAAGGAGCCACCGAATT
TTTGGCAGGTGCTGTTTTGGCCTACGAACCTAATGTATTCACCACTCCTT
GCGGCGTTTGTCGTCAGTTTATACGCGAGTTTGCCAACGCGGATATACCC
ATATATGTGGCCCAGGCGATCGATGCGAGGATTGCTGAAAAGCAGGAACT
TTTGCAGAGTGACGATCCCGTCATGTGCACCTCAATCTTTAATCTGTTGC
CGAGCAGTTTTCACACCTATCGAAAGTAAAAGCTTTCTAGACC
BS13262.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8353-PA | 513 | CG8353-RA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:37:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8353-RB | 1011 | CG8353-RB | 374..886 | 17..529 | 2565 | 100 | Plus |
CG8353-RA | 751 | CG8353-RA | 114..626 | 17..529 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8214671..8215114 | 86..529 | 2220 | 100 | Plus |
2L | 23513712 | 2L | 8214418..8214487 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:37:11 has no hits.
BS13262.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:05 Download gff for
BS13262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-PA | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:30 Download gff for
BS13262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-RA | 114..626 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:01 Download gff for
BS13262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-RA | 114..626 | 17..529 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:01 Download gff for
BS13262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8214418..8214487 | 17..86 | 100 | -> | Plus |
2L | 8214672..8215114 | 87..529 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:30 Download gff for
BS13262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8214418..8214487 | 17..86 | 100 | -> | Plus |
arm_2L | 8214672..8215114 | 87..529 | 100 | | Plus |
BS13262.3prime Sequence
543 bp (543 high quality bases) assembled on 2006-10-13
> BS13262.3prime
ATGGTCTAGAAAGCTTTTACTTTCGATAGGTGTGAAAACTGCTCGGCAAC
AGATTAAAGATTGAGGTGCACATGACGGGATCGTCACTCTGCAAAAGTTC
CTGCTTTTCAGCAATCCTCGCATCGATCGCCTGGGCCACATATATGGGTA
TATCCGCGTTGGCAAACTCGCGTATAAACTGACGACAAACGCCGCAAGGA
GTGGTGAATACATTAGGTTCGTAGGCCAAAACAGCACCTGCCAAAAATTC
GGTGGCTCCTTCGCTTACGGCCTTAGCAATGGCCGTTCTCTCGGCACAAG
AGCCCGGCGTAAAGGCGGCGTTTTCCACATTGCAGCCAGTGAAGATCTTT
CCATCGACCTTGGCCCGAAAAGCAGCCCCAACTTTGAAGCCACTATATGG
AACGTATGCCCGCTGGCGCACTTGAAAAGCAGCTGTCAGAAGTTCTTGAA
CCGACGGATCCAGACTGCCGAAGGTCACAACCTCCTCATTCTTTTCTGGA
CGTGCGAAATTTTTTGTCAGATGTGTCATGTCGACTGATAACT
BS13262.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8353-PA | 513 | CG8353-RA | 1..513 | 529..17 | 2565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8353-RB | 1011 | CG8353-RB | 374..886 | 529..17 | 2565 | 100 | Minus |
CG8353-RA | 751 | CG8353-RA | 114..626 | 529..17 | 2565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:11:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8214671..8215114 | 460..17 | 2220 | 100 | Minus |
2L | 23513712 | 2L | 8214418..8214487 | 529..460 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:11:40 has no hits.
BS13262.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:05 Download gff for
BS13262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-PA | 1..513 | 17..529 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:39:58 Download gff for
BS13262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-RA | 114..626 | 17..529 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:14 Download gff for
BS13262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-RA | 114..626 | 17..529 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:14 Download gff for
BS13262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8214418..8214487 | 460..529 | 100 | -> | Minus |
2L | 8214672..8215114 | 17..459 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:39:58 Download gff for
BS13262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8214418..8214487 | 460..529 | 100 | -> | Minus |
arm_2L | 8214672..8215114 | 17..459 | 100 | | Minus |
BS13262.complete Sequence
545 bp assembled on 2006-11-01
GenBank Submission: FJ637408
> BS13262.complete
GAAGTTATCAGTCGACATGACACATCTGACAAAAAATTTCGCACGTCCAG
AAAAGAATGAGGAGGTTGTGACCTTCGGCAGTCTGGATCCGTCGGTTCAA
GAACTTCTGACAGCTGCTTTTCAAGTGCGCCAGCGGGCATACGTTCCATA
TAGTGGCTTCAAAGTTGGGGCTGCTTTTCGGGCCAAGGTCGATGGAAAGA
TCTTCACTGGCTGCAATGTGGAAAACGCCGCCTTTACGCCGGGCTCTTGT
GCCGAGAGAACGGCCATTGCTAAGGCCGTAAGCGAAGGAGCCACCGAATT
TTTGGCAGGTGCTGTTTTGGCCTACGAACCTAATGTATTCACCACTCCTT
GCGGCGTTTGTCGTCAGTTTATACGCGAGTTTGCCAACGCGGATATACCC
ATATATGTGGCCCAGGCGATCGATGCGAGGATTGCTGAAAAGCAGGAACT
TTTGCAGAGTGACGATCCCGTCATGTGCACCTCAATCTTTAATCTGTTGC
CGAGCAGTTTTCACACCTATCGAAAGTAAAAGCTTTCTAGACCAT
BS13262.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:12:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8353-RB | 513 | CG8353-PB | 1..513 | 17..529 | 2565 | 100 | Plus |
CG8353-RA | 513 | CG8353-PA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8353-RB | 1011 | CG8353-RB | 374..886 | 17..529 | 2565 | 100 | Plus |
CG8353-RA | 751 | CG8353-RA | 114..626 | 17..529 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8214671..8215114 | 86..529 | 2220 | 100 | Plus |
2L | 23513712 | 2L | 8214418..8214487 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:12:15 has no hits.
BS13262.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:25 Download gff for
BS13262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-RA | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:53:28 Download gff for
BS13262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-RA | 114..626 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:38 Download gff for
BS13262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-RA | 114..624 | 17..527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:25 Download gff for
BS13262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-RA | 114..626 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:05 Download gff for
BS13262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-RA | 114..624 | 17..527 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:05 Download gff for
BS13262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8214418..8214487 | 17..86 | 100 | -> | Plus |
2L | 8214672..8215112 | 87..527 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:38 Download gff for
BS13262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8214418..8214487 | 17..86 | 100 | -> | Plus |
arm_2L | 8214672..8215112 | 87..527 | 100 | | Plus |
BS13262.pep Sequence
Translation from 16 to 528
> BS13262.pep
MTHLTKNFARPEKNEEVVTFGSLDPSVQELLTAAFQVRQRAYVPYSGFKV
GAAFRAKVDGKIFTGCNVENAAFTPGSCAERTAIAKAVSEGATEFLAGAV
LAYEPNVFTTPCGVCRQFIREFANADIPIYVAQAIDARIAEKQELLQSDD
PVMCTSIFNLLPSSFHTYRK*
BS13262.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8353-PB | 170 | CG8353-PB | 1..170 | 1..170 | 875 | 100 | Plus |
CG8353-PA | 170 | CG8353-PA | 1..170 | 1..170 | 875 | 100 | Plus |
CG8349-PA | 264 | CG8349-PA | 100..263 | 5..168 | 416 | 51.5 | Plus |
CG8360-PC | 158 | CG8360-PC | 1..152 | 1..165 | 379 | 49.4 | Plus |
CG8360-PA | 158 | CG8360-PA | 1..152 | 1..165 | 379 | 49.4 | Plus |