Clone BS13262 Report

Search the DGRC for BS13262

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG8353-RA
Protein status:BS13262.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13262.5prime Sequence

543 bp (543 high quality bases) assembled on 2006-10-13

> BS13262.5prime
GAAGTTATCAGTCGACATGACACATCTGACAAAAAATTTCGCACGTCCAG
AAAAGAATGAGGAGGTTGTGACCTTCGGCAGTCTGGATCCGTCGGTTCAA
GAACTTCTGACAGCTGCTTTTCAAGTGCGCCAGCGGGCATACGTTCCATA
TAGTGGCTTCAAAGTTGGGGCTGCTTTTCGGGCCAAGGTCGATGGAAAGA
TCTTCACTGGCTGCAATGTGGAAAACGCCGCCTTTACGCCGGGCTCTTGT
GCCGAGAGAACGGCCATTGCTAAGGCCGTAAGCGAAGGAGCCACCGAATT
TTTGGCAGGTGCTGTTTTGGCCTACGAACCTAATGTATTCACCACTCCTT
GCGGCGTTTGTCGTCAGTTTATACGCGAGTTTGCCAACGCGGATATACCC
ATATATGTGGCCCAGGCGATCGATGCGAGGATTGCTGAAAAGCAGGAACT
TTTGCAGAGTGACGATCCCGTCATGTGCACCTCAATCTTTAATCTGTTGC
CGAGCAGTTTTCACACCTATCGAAAGTAAAAGCTTTCTAGACC

BS13262.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8353-PA 513 CG8353-RA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8353-RB 1011 CG8353-RB 374..886 17..529 2565 100 Plus
CG8353-RA 751 CG8353-RA 114..626 17..529 2565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8214671..8215114 86..529 2220 100 Plus
2L 23513712 2L 8214418..8214487 17..86 350 100 Plus
Blast to na_te.dros performed on 2015-02-08 11:37:11 has no hits.

BS13262.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:05 Download gff for BS13262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8353-PA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:30 Download gff for BS13262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8353-RA 114..626 17..529 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:01 Download gff for BS13262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8353-RA 114..626 17..529 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:01 Download gff for BS13262.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8214418..8214487 17..86 100 -> Plus
2L 8214672..8215114 87..529 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:30 Download gff for BS13262.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8214418..8214487 17..86 100 -> Plus
arm_2L 8214672..8215114 87..529 100   Plus

BS13262.3prime Sequence

543 bp (543 high quality bases) assembled on 2006-10-13

> BS13262.3prime
ATGGTCTAGAAAGCTTTTACTTTCGATAGGTGTGAAAACTGCTCGGCAAC
AGATTAAAGATTGAGGTGCACATGACGGGATCGTCACTCTGCAAAAGTTC
CTGCTTTTCAGCAATCCTCGCATCGATCGCCTGGGCCACATATATGGGTA
TATCCGCGTTGGCAAACTCGCGTATAAACTGACGACAAACGCCGCAAGGA
GTGGTGAATACATTAGGTTCGTAGGCCAAAACAGCACCTGCCAAAAATTC
GGTGGCTCCTTCGCTTACGGCCTTAGCAATGGCCGTTCTCTCGGCACAAG
AGCCCGGCGTAAAGGCGGCGTTTTCCACATTGCAGCCAGTGAAGATCTTT
CCATCGACCTTGGCCCGAAAAGCAGCCCCAACTTTGAAGCCACTATATGG
AACGTATGCCCGCTGGCGCACTTGAAAAGCAGCTGTCAGAAGTTCTTGAA
CCGACGGATCCAGACTGCCGAAGGTCACAACCTCCTCATTCTTTTCTGGA
CGTGCGAAATTTTTTGTCAGATGTGTCATGTCGACTGATAACT

BS13262.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8353-PA 513 CG8353-RA 1..513 529..17 2565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8353-RB 1011 CG8353-RB 374..886 529..17 2565 100 Minus
CG8353-RA 751 CG8353-RA 114..626 529..17 2565 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8214671..8215114 460..17 2220 100 Minus
2L 23513712 2L 8214418..8214487 529..460 350 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:11:40 has no hits.

BS13262.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:05 Download gff for BS13262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8353-PA 1..513 17..529 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:39:58 Download gff for BS13262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8353-RA 114..626 17..529 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:14 Download gff for BS13262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8353-RA 114..626 17..529 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:14 Download gff for BS13262.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8214418..8214487 460..529 100 -> Minus
2L 8214672..8215114 17..459 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:39:58 Download gff for BS13262.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8214418..8214487 460..529 100 -> Minus
arm_2L 8214672..8215114 17..459 100   Minus

BS13262.complete Sequence

545 bp assembled on 2006-11-01

GenBank Submission: FJ637408

> BS13262.complete
GAAGTTATCAGTCGACATGACACATCTGACAAAAAATTTCGCACGTCCAG
AAAAGAATGAGGAGGTTGTGACCTTCGGCAGTCTGGATCCGTCGGTTCAA
GAACTTCTGACAGCTGCTTTTCAAGTGCGCCAGCGGGCATACGTTCCATA
TAGTGGCTTCAAAGTTGGGGCTGCTTTTCGGGCCAAGGTCGATGGAAAGA
TCTTCACTGGCTGCAATGTGGAAAACGCCGCCTTTACGCCGGGCTCTTGT
GCCGAGAGAACGGCCATTGCTAAGGCCGTAAGCGAAGGAGCCACCGAATT
TTTGGCAGGTGCTGTTTTGGCCTACGAACCTAATGTATTCACCACTCCTT
GCGGCGTTTGTCGTCAGTTTATACGCGAGTTTGCCAACGCGGATATACCC
ATATATGTGGCCCAGGCGATCGATGCGAGGATTGCTGAAAAGCAGGAACT
TTTGCAGAGTGACGATCCCGTCATGTGCACCTCAATCTTTAATCTGTTGC
CGAGCAGTTTTCACACCTATCGAAAGTAAAAGCTTTCTAGACCAT

BS13262.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8353-RB 513 CG8353-PB 1..513 17..529 2565 100 Plus
CG8353-RA 513 CG8353-PA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8353-RB 1011 CG8353-RB 374..886 17..529 2565 100 Plus
CG8353-RA 751 CG8353-RA 114..626 17..529 2565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8214671..8215114 86..529 2220 100 Plus
2L 23513712 2L 8214418..8214487 17..86 350 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:12:15 has no hits.

BS13262.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:25 Download gff for BS13262.complete
Subject Subject Range Query Range Percent Splice Strand
CG8353-RA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:53:28 Download gff for BS13262.complete
Subject Subject Range Query Range Percent Splice Strand
CG8353-RA 114..626 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:38 Download gff for BS13262.complete
Subject Subject Range Query Range Percent Splice Strand
CG8353-RA 114..624 17..527 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:25 Download gff for BS13262.complete
Subject Subject Range Query Range Percent Splice Strand
CG8353-RA 114..626 17..529 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:05 Download gff for BS13262.complete
Subject Subject Range Query Range Percent Splice Strand
CG8353-RA 114..624 17..527 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:05 Download gff for BS13262.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8214418..8214487 17..86 100 -> Plus
2L 8214672..8215112 87..527 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:38 Download gff for BS13262.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8214418..8214487 17..86 100 -> Plus
arm_2L 8214672..8215112 87..527 100   Plus

BS13262.pep Sequence

Translation from 16 to 528

> BS13262.pep
MTHLTKNFARPEKNEEVVTFGSLDPSVQELLTAAFQVRQRAYVPYSGFKV
GAAFRAKVDGKIFTGCNVENAAFTPGSCAERTAIAKAVSEGATEFLAGAV
LAYEPNVFTTPCGVCRQFIREFANADIPIYVAQAIDARIAEKQELLQSDD
PVMCTSIFNLLPSSFHTYRK*

BS13262.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8353-PB 170 CG8353-PB 1..170 1..170 875 100 Plus
CG8353-PA 170 CG8353-PA 1..170 1..170 875 100 Plus
CG8349-PA 264 CG8349-PA 100..263 5..168 416 51.5 Plus
CG8360-PC 158 CG8360-PC 1..152 1..165 379 49.4 Plus
CG8360-PA 158 CG8360-PA 1..152 1..165 379 49.4 Plus