Clone BS13265 Report

Search the DGRC for BS13265

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG9095-RA
Protein status:BS13265.pep: full length peptide match
Sequenced Size:2900

Clone Sequence Records

BS13265.3prime Sequence

684 bp (612 high quality bases) assembled on 2006-10-13

> BS13265.3prime
ATGGTCTAGAAAGCTTTCAATAGTGGCCGCCACCACCGCCTCCGCCGCCA
CCACCACCACCACTATGTCGGTGGTGCTCGCGTCTGCCGGAGGAGTGATC
CCGATCGCGGTAGTCGCCGTTGCGGGAGCTGCTCTTGTGGTGATGATGGT
GATGGCGCTTCTTCTCGCCCTTCAGGCACACATCCGACACCACCGAGGAC
ACCACCATCTCGGAGTCATCCCGCATGCCGTAGTTGTCCCTGCCGCATCT
GTCGAGATTTTCGCGGGATCGCTGCATATTGTCGCGCAGATTGTCCCGGG
AACGGGTCATGCTCGGTGGATCGAGGGTCTCCTTGCGGCGGAGGGCGTTG
TGTGAGCTGTTCTTCGAGGCGGACTCGTGCAGGTTCTCCCAGGCTTGGCG
GTAGTACCTGTTGAGTCCATTGCGGGATCCGGAGGTGGAGCTATCGAAGC
TGGCCACAGTGTTGCAGTCGGGCGAGGCGCGATGGCGATAGTGTTGTGTG
GTTCGGTTTCTTCGCACAAGGATCACGATCGTTGTGATGACGGCGGCCAG
GAAGACGAAACCACCAAAAGCGCCCAGAGCAACGATGGCGCCCAGATTAA
GTTTGGCCTCCTTGGTCTCCTTGCGGTCGGGATTATCGACGGCGAAGGGC
ACGTTGACTTTGGGCGACTGGTTCTGCTGGATGT

BS13265.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9095-PA 2868 CG9095-RA 2201..2868 684..17 3315 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9095-RC 4791 CG9095-RC 2772..3439 684..17 3325 99.9 Minus
CG9095-RA 4791 CG9095-RA 2772..3439 684..17 3325 99.9 Minus
CG9095-RD 4809 CG9095-RD 2772..3457 684..17 3135 97.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15141289..15141524 17..252 1180 100 Plus
X 23542271 X 15144251..15144425 510..684 860 99.4 Plus
X 23542271 X 15141612..15141772 249..409 805 100 Plus
X 23542271 X 15141895..15142000 406..511 530 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:27:00 has no hits.

BS13265.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:07 Download gff for BS13265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9095-PA 2201..2868 17..684 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:19:34 Download gff for BS13265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9095-RA 2772..3439 17..684 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:01:06 Download gff for BS13265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9095-RA 2772..3439 17..684 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:01:06 Download gff for BS13265.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15141289..15141520 17..248 100 <- Plus
X 15141612..15141770 249..407 100 <- Plus
X 15141897..15141998 408..509 100 <- Plus
X 15144251..15144425 510..684 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:19:34 Download gff for BS13265.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15035322..15035553 17..248 100 <- Plus
arm_X 15035645..15035803 249..407 100 <- Plus
arm_X 15035930..15036031 408..509 100 <- Plus
arm_X 15038284..15038458 510..684 99   Plus

BS13265.5prime Sequence

664 bp (588 high quality bases) assembled on 2006-10-13

> BS13265.5prime
GAAGTTATCAGTCGACATGCACCGCACGCAGCCGTCGCTGCCGCTGCCTC
TGCCGCTGCTGGCGTTGGCGTTGGCGTTGGCTTCGGCGCTGGCTTTTGCG
CAGGCGCAGAATATAGATGCCGGTTGCAGTTTCCCGGGATCGCCGGCGCA
CAGCAGCGTCGTCTTCTCGAATGCGAATCTCACCCAGGGCACGGTGGCCT
CCTACAGCTGCGAGCGGGGATTCGAGCTTCTGGGACCGGCGCGGCGTGTC
TGCGACAAGGGGCAATGGGTGCCCGAGGGCATTCCGTTCTGCGTTTTGAA
CGTTGCCGCTGGCAAGGCGCCCATGCAGATTTCCACTGATGGCGCTGGTG
CTCCACAAAAGGCCATCGATGGCTCCACATCCGCCTTCTTCACACCGGAG
ACCTGCTCGCTGACGAAGGCGGAGCGATCGCCCTGGTGGTATGTGAATCT
CCTGGAACCCTACATGGTGCAACTGGTGCGTCTGGACTTTGGCAAATCCT
GTTGCGGCAATAAGCCCGCCACAATTGTAGTGCGAGTGGGCAACAACCGA
CCGGACTTGGGCACAAATCCGATCTGCAACCGCTTCACGGGCCTCCTGGA
GGCCGGACAGCCGCTCTTCCTGCCCTGCAATCCCCCGATGCCGGGAGCCT
TCGTGAGTGTCCAC

BS13265.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9095-PA 2868 CG9095-RA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9095-RC 4791 CG9095-RC 572..1219 17..664 3240 100 Plus
CG9095-RD 4809 CG9095-RD 572..1219 17..664 3240 100 Plus
CG9095-RB 5349 CG9095-RB 572..1219 17..664 3240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15148068..15148282 507..293 1075 100 Minus
X 23542271 X 15150692..15150870 293..115 895 100 Minus
X 23542271 X 15146297..15146455 664..506 795 100 Minus
X 23542271 X 15162555..15162654 116..17 500 100 Minus
Blast to na_te.dros performed 2015-02-12 11:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsub\GEM 1730 Dsub\GEM GEM 1730bp 144..171 60..33 113 89.3 Minus

BS13265.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:08 Download gff for BS13265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9095-PA 1..648 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:39:17 Download gff for BS13265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9095-RB 564..1219 9..664 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:56:09 Download gff for BS13265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9095-RB 564..1219 9..664 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:56:09 Download gff for BS13265.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15146297..15146454 507..664 100 <- Minus
X 15148069..15148281 294..506 100 <- Minus
X 15150692..15150868 117..293 100 <- Minus
X 15162555..15162662 9..116 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:39:17 Download gff for BS13265.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15040330..15040487 507..664 100 <- Minus
arm_X 15042102..15042314 294..506 100 <- Minus
arm_X 15044725..15044901 117..293 100 <- Minus
arm_X 15056588..15056695 9..116 97   Minus

BS13265.complete Sequence

2900 bp assembled on 2009-08-24

GenBank Submission: KX802503

> BS13265.complete
GAAGTTATCAGTCGACATGCACCGCACGCAGCCGTCGCTGCCGCTGCCTC
TGCCGCTGCTGGCGTTGGCGTTGGCGTTGGCTTCGGCGCTGGCTTTTGCG
CAGGCGCAGAATATAGATGCCGGTTGCAGTTTCCCGGGATCGCCGGCGCA
CAGCAGCGTCGTCTTCTCGAATGCGAATCTCACCCAGGGCACGGTGGCCT
CCTACAGCTGCGAGCGGGGATTCGAGCTTCTGGGACCGGCGCGGCGTGTC
TGCGACAAGGGGCAATGGGTGCCCGAGGGCATTCCGTTCTGCGTTTTGAA
CGTTGCCGCTGGCAAGGCGCCCATGCAGATTTCCACTGATGGCGCTGGTG
CTCCACAAAAGGCCATCGATGGCTCCACATCCGCCTTCTTCACACCGGAG
ACCTGCTCGCTGACGAAGGCGGAGCGATCGCCCTGGTGGTATGTGAATCT
CCTGGAACCCTACATGGTGCAACTGGTGCGTCTGGACTTTGGCAAATCCT
GTTGCGGCAATAAGCCCGCCACAATTGTAGTGCGAGTGGGCAACAACCGA
CCGGACTTGGGCACAAATCCGATCTGCAACCGCTTCACGGGCCTCCTGGA
GGCCGGACAGCCGCTCTTCCTGCCCTGCAATCCCCCGATGCCGGGAGCCT
TCGTGAGTGTCCACCTGGAGAATAGCACACCCAATCCGCTGTCCATTTGC
GAGGCGTTCGTCTACACGGACCAAGCGCTGCCCATCGAGCGGTGTCCCAC
CTTCCGCGATCAGCCGCCTGGAGCTCTGGCCTCGTACAATGGCAAGTGCT
ACATCTTCTACAACCGCCAGCCGCTGAACTTTTTGGACGCACTGTCCTTC
TGTCGATCCCGTGGCGGTACGCTGATCAGTGAGAGCAATCCGGCGCTGCA
GGGATTCATCAGTTGGGAGCTGTGGCGGCGTCATCGCAGTGACGTCAGTT
CGCAGTACTGGATGGGAGCGGTACGTGATGGCAGCGATCGCAGCAGCTGG
AAATGGGTGAACGGTGACGAGCTGACCGTCTCCTTCTGGAGTCATCCCGG
CGGCGATGAGGATTGTGCCCGATTTGATGGCTCCAAGGGCTGGCTCTGGA
GCGATACCAACTGCAACACGCTGCTGAACTTCATCTGTCAGCACCAACCG
AAGACCTGTGGCCGACCGGAGCAACCGCCCAATTCCACGATGGTAGCCCT
GAACGGATTCGAGGTTGGCGCCCAGATCAAGTACAGCTGCGATGCCAATC
ACCTGCTGGTGGGTCCCGCCACGAGGACCTGCCTGGAGACTGGATTCTAC
AATGAGTTCCCGCCAGTGTGCAAGTACATCGAGTGTGGTCTGCCGGCCAG
CATTGCCCATGGTTCCTACGCCCTGCTCAACAACACGGTTGGCTACTTGA
GCCTGGTGAAGTATTCGTGCGAGGAGGGTTACGAGATGATAGGACGAGCT
TTGCTCACCTGCGACTTTGATGAGCGCTGGAATGGACCTCCACCACGTTG
TGAGATTGTGGAGTGCGACACTCTGCCCGGCAACTACTACAGCACCATTA
TCAACGCTCCCAATGGCACATACTACGGCTCCAAGGCGGAGATCAGTTGT
CCACCCGGATACCGCATGGAAGGACCTCGAGTGCTTACCTGCCTGGCCAG
TGGTCAATGGAGCAGTGCCCTGCCGCGTTGCATCAAACTGGAACCGTCCA
CTCAGCCCACTGCCGCGTCCACCATTCCCGTGCCCTCGTCGGTGGCCACG
CCACCACCGTTCCGCCCCAAGGTGGTCAGCTCGACCACCAGCCGCACCCC
CTACCGCCCAGCAGTATCCACGGCGAGCAGCGGCATTGGCGGCAGCTCCA
CCAGCACAGTGGGCACGTATCCCAGTCTCAGCCCCACGCAGGTGGAGATC
AATGGCGAATCTGAATCCGAAGAGGAAATCAATGTGCCTCCAGTGCCTGG
CACCGTTCGCGAGGAGTTCCCACCACGACGCACAGTTCGTCCAGTGCTCA
TACCGAAGAAGCCGAACAGCACACCGGCTGCCCTGCCGCCCACCACCCAT
CAGGTGCCACCGCAACCACCGTCCACCTACGCACCCACACCACCGCGCAG
CTCGCGACCAAGTGGTGCTCCGAATAGCGCCGGCGAAGTGGAGACAACCA
CGCGGAATACACAGCAGATCATCGCCAATTCGCATCCGCAAGACAACGAG
ATCCCCGACAGTGTCAACATCCAGCAGAACCAGTCGCCCAATGTCAACGT
GCCCTTCGCCGTCGATAATCCCGACCGCAAGGAGACCAAGGAGGCCAAAC
TTAATCTGGGCGCCATCGTTGCTCTGGGCGCTTTTGGTGGTTTCGTCTTC
CTGGCCGCCGTCATCACAACGATCGTGATCCTTGTGCGAAGAAACCGAAC
CACACAACACTATCGCCATCGCGCCTCGCCCGACTGCAACACTGTGGCCA
GCTTCGATAGCTCCACCTCCGGATCCCGCAATGGACTCAACAGGTACTAC
CGCCAAGCCTGGGAGAACCTGCACGAGTCCGCCTCGAAGAACAGCTCACA
CAACGCCCTCCGCCGCAAGGAGACCCTCGATCCACCGAGCATGACCCGTT
CCCGGGACAATCTGCGCGACAATATGCAGCGATCCCGCGAAAATCTCGAC
AGATGCGGCAGGGACAACTACGGCATGCGGGATGACTCCGAGATGGTGGT
GTCCTCGGTGGTGTCGGATGTGTGCCTGAAGGGCGAGAAGAAGCGCCATC
ACCATCATCACCACAAGAGCAGCTCCCGCAACGGCGACTACCGCGATCGG
GATCACTCCTCCGGCAGACGCGAGCACCACCGACATAGTGGTGGTGGTGG
TGGCGGCGGAGGCGGTGGTGGCGGCCACTATTGAAAGCTTTCTAGACCAT

BS13265.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9095-RC 2907 CG9095-PC 1..2868 17..2884 14340 100 Plus
CG9095-RA 2868 CG9095-PA 1..2868 17..2884 14340 100 Plus
CG9095-RD 2886 CG9095-PD 1..2886 17..2884 14125 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9095-RC 4791 CG9095-RC 572..3439 17..2884 14340 100 Plus
CG9095-RA 4791 CG9095-RA 572..3439 17..2884 14340 100 Plus
CG9095-RD 4809 CG9095-RD 572..3457 17..2884 14125 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15145636..15146455 1325..506 4100 100 Minus
X 23542271 X 15144251..15144731 2391..1911 2405 100 Minus
X 23542271 X 15144875..15145283 1914..1506 2030 99.8 Minus
X 23542271 X 15141289..15141524 2884..2649 1180 100 Minus
X 23542271 X 15148068..15148282 507..293 1075 100 Minus
X 23542271 X 15145357..15145536 1505..1326 900 100 Minus
X 23542271 X 15150692..15150870 293..115 895 100 Minus
X 23542271 X 15141612..15141772 2652..2492 805 100 Minus
X 23542271 X 15141895..15142000 2495..2390 530 100 Minus
X 23542271 X 15162555..15162654 116..17 500 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:29:07 has no hits.

BS13265.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:57 Download gff for BS13265.complete
Subject Subject Range Query Range Percent Splice Strand
CG9095-RA 569..3435 17..2883 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:59 Download gff for BS13265.complete
Subject Subject Range Query Range Percent Splice Strand
CG9095-RA 572..3438 17..2883 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:40 Download gff for BS13265.complete
Subject Subject Range Query Range Percent Splice Strand
CG9095-RA 572..3438 17..2883 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:40 Download gff for BS13265.complete
Subject Subject Range Query Range Percent Splice Strand
X 15150692..15150868 117..293 100 <- Minus
X 15162555..15162654 17..116 100   Minus
X 15148069..15148281 294..506 100 <- Minus
X 15141290..15141520 2653..2883 100 <- Minus
X 15141612..15141770 2494..2652 100 <- Minus
X 15141897..15141998 2392..2493 100 <- Minus
X 15144251..15144731 1911..2391 100 <- Minus
X 15144879..15145283 1506..1910 100 <- Minus
X 15145357..15145536 1326..1505 100 <- Minus
X 15145636..15146454 507..1325 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:59 Download gff for BS13265.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15042102..15042314 294..506 100 <- Minus
arm_X 15035323..15035553 2653..2883 100 <- Minus
arm_X 15035645..15035803 2494..2652 100 <- Minus
arm_X 15035930..15036031 2392..2493 100 <- Minus
arm_X 15038284..15038764 1911..2391 100 <- Minus
arm_X 15038912..15039316 1506..1910 100 <- Minus
arm_X 15039390..15039569 1326..1505 100 <- Minus
arm_X 15039669..15040487 507..1325 100 <- Minus
arm_X 15044725..15044901 117..293 100 <- Minus
arm_X 15056588..15056687 17..116 100   Minus

BS13265.pep Sequence

Translation from 16 to 2883

> BS13265.pep
MHRTQPSLPLPLPLLALALALASALAFAQAQNIDAGCSFPGSPAHSSVVF
SNANLTQGTVASYSCERGFELLGPARRVCDKGQWVPEGIPFCVLNVAAGK
APMQISTDGAGAPQKAIDGSTSAFFTPETCSLTKAERSPWWYVNLLEPYM
VQLVRLDFGKSCCGNKPATIVVRVGNNRPDLGTNPICNRFTGLLEAGQPL
FLPCNPPMPGAFVSVHLENSTPNPLSICEAFVYTDQALPIERCPTFRDQP
PGALASYNGKCYIFYNRQPLNFLDALSFCRSRGGTLISESNPALQGFISW
ELWRRHRSDVSSQYWMGAVRDGSDRSSWKWVNGDELTVSFWSHPGGDEDC
ARFDGSKGWLWSDTNCNTLLNFICQHQPKTCGRPEQPPNSTMVALNGFEV
GAQIKYSCDANHLLVGPATRTCLETGFYNEFPPVCKYIECGLPASIAHGS
YALLNNTVGYLSLVKYSCEEGYEMIGRALLTCDFDERWNGPPPRCEIVEC
DTLPGNYYSTIINAPNGTYYGSKAEISCPPGYRMEGPRVLTCLASGQWSS
ALPRCIKLEPSTQPTAASTIPVPSSVATPPPFRPKVVSSTTSRTPYRPAV
STASSGIGGSSTSTVGTYPSLSPTQVEINGESESEEEINVPPVPGTVREE
FPPRRTVRPVLIPKKPNSTPAALPPTTHQVPPQPPSTYAPTPPRSSRPSG
APNSAGEVETTTRNTQQIIANSHPQDNEIPDSVNIQQNQSPNVNVPFAVD
NPDRKETKEAKLNLGAIVALGAFGGFVFLAAVITTIVILVRRNRTTQHYR
HRASPDCNTVASFDSSTSGSRNGLNRYYRQAWENLHESASKNSSHNALRR
KETLDPPSMTRSRDNLRDNMQRSRENLDRCGRDNYGMRDDSEMVVSSVVS
DVCLKGEKKRHHHHHHKSSSRNGDYRDRDHSSGRREHHRHSGGGGGGGGG
GGGHY*

BS13265.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9095-PC 968 CG9095-PC 1..955 1..955 5174 100 Plus
CG9095-PA 955 CG9095-PA 1..955 1..955 5174 100 Plus
CG9095-PD 961 CG9095-PD 1..961 1..955 5157 99.4 Plus
CG9095-PB 1141 CG9095-PB 1..802 1..803 4275 99 Plus
CG9095-PB 1141 CG9095-PB 979..1141 793..955 900 100 Plus
fw-PC 1174 CG1500-PC 35..578 13..555 760 32.5 Plus