Clone Sequence Records
BS13267.5prime Sequence
504 bp (504 high quality bases) assembled on 2006-10-13
> BS13267.5prime
GAAGTTATCAGTCGACATGAGCCGTCAGCTAAAGTTCCACCTTCAAGCTC
CCGACGACGAGGAGTTCGCAGCGGATCTGGTGGAGATTAACCTGAACCCC
AACTGCGGCCAGGTCAAGCAGAAGTCGGCTCAGGCCTTGGACCAGCTGCT
CCTGGCCACGCCCCCACACAGAGGCTATCCCTACGGCTATGCCGAGGACT
CCGAGCCGGATACCTACTTCTGCCGGAAGAGCAACTCCACAGGCCAACTG
GCCGAGAAGGTATCACCTCCGCCGCCCGCTGCCACCAACATTAGTTGCCT
CCGCCAGATGTACTGTCCGGAGTGCCACGAGCGATTGCACGAGCAGGGAG
TCCGCCTGGAGCGACTCCTTACCATGTGCTGCTTTGCCCTGCTGCCCATC
TATCCCTGCTGCCCGAGGCGCTCCACCAACGATTGCAAGGTCATCTGCGG
CAAGTGTGGTTACCTCTTGGGGGCATGGAAAAGACAGTGAAAGCTTTCTA
GACC
BS13267.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30217-PA | 474 | CG30217-RA | 1..474 | 17..490 | 2370 | 100 | Plus |
CG30217-PB | 819 | CG30217-RB | 1..442 | 17..458 | 2210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43326-RB | 1229 | CG43326-RB | 19..494 | 15..490 | 2380 | 100 | Plus |
CG43325-RC | 765 | CG43325-RC | 156..631 | 15..490 | 2380 | 100 | Plus |
CG43325-RB | 628 | CG30217-RB | 19..494 | 15..490 | 2380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22656617..22656980 | 378..15 | 1820 | 100 | Minus |
2R | 25286936 | 2R | 22656353..22656465 | 490..378 | 565 | 100 | Minus |
Blast to na_te.dros performed 2015-02-08 11:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6466..6506 | 81..41 | 106 | 73.2 | Minus |
BS13267.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:09 Download gff for
BS13267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30217-PA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:45 Download gff for
BS13267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43325-RA | 10..494 | 3..490 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:11 Download gff for
BS13267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43325-RB | 10..494 | 3..490 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:11 Download gff for
BS13267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22656353..22656464 | 379..490 | 100 | <- | Minus |
2R | 22656617..22656989 | 3..378 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:45 Download gff for
BS13267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18543858..18543969 | 379..490 | 100 | <- | Minus |
arm_2R | 18544122..18544494 | 3..378 | 98 | | Minus |
BS13267.3prime Sequence
504 bp (504 high quality bases) assembled on 2006-10-13
> BS13267.3prime
ATGGTCTAGAAAGCTTTCACTGTCTTTTCCATGCCCCCAAGAGGTAACCA
CACTTGCCGCAGATGACCTTGCAATCGTTGGTGGAGCGCCTCGGGCAGCA
GGGATAGATGGGCAGCAGGGCAAAGCAGCACATGGTAAGGAGTCGCTCCA
GGCGGACTCCCTGCTCGTGCAATCGCTCGTGGCACTCCGGACAGTACATC
TGGCGGAGGCAACTAATGTTGGTGGCAGCGGGCGGCGGAGGTGATACCTT
CTCGGCCAGTTGGCCTGTGGAGTTGCTCTTCCGGCAGAAGTAGGTATCCG
GCTCGGAGTCCTCGGCATAGCCGTAGGGATAGCCTCTGTGTGGGGGCGTG
GCCAGGAGCAGCTGGTCCAAGGCCTGAGCCGACTTCTGCTTGACCTGGCC
GCAGTTGGGGTTCAGGTTAATCTCCACCAGATCCGCTGCGAACTCCTCGT
CGTCGGGAGCTTGAAGGTGGAACTTTAGCTGACGGCTCATGTCGACTGAT
AACT
BS13267.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30217-PA | 474 | CG30217-RA | 1..474 | 490..17 | 2370 | 100 | Minus |
CG30217-PB | 819 | CG30217-RB | 1..442 | 490..49 | 2210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43326-RB | 1229 | CG43326-RB | 19..494 | 492..17 | 2380 | 100 | Minus |
CG43325-RC | 765 | CG43325-RC | 156..631 | 492..17 | 2380 | 100 | Minus |
CG43325-RB | 628 | CG30217-RB | 19..494 | 492..17 | 2380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22656617..22656980 | 129..492 | 1820 | 100 | Plus |
2R | 25286936 | 2R | 22656353..22656465 | 17..129 | 565 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 11:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6466..6506 | 426..466 | 106 | 73.2 | Plus |
BS13267.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:09 Download gff for
BS13267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30217-PA | 1..474 | 17..490 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:42:55 Download gff for
BS13267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43325-RA | 10..494 | 17..504 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:12 Download gff for
BS13267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43325-RB | 10..494 | 17..504 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:12 Download gff for
BS13267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22656353..22656464 | 17..128 | 100 | <- | Plus |
2R | 22656617..22656989 | 129..504 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:42:55 Download gff for
BS13267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18543858..18543969 | 17..128 | 100 | <- | Plus |
arm_2R | 18544122..18544494 | 129..504 | 98 | | Plus |
BS13267.complete Sequence
506 bp assembled on 2006-11-01
GenBank Submission: FJ637409
> BS13267.complete
GAAGTTATCAGTCGACATGAGCCGTCAGCTAAAGTTCCACCTTCAAGCTC
CCGACGACGAGGAGTTCGCAGCGGATCTGGTGGAGATTAACCTGAACCCC
AACTGCGGCCAGGTCAAGCAGAAGTCGGCTCAGGCCTTGGACCAGCTGCT
CCTGGCCACGCCCCCACACAGAGGCTATCCCTACGGCTATGCCGAGGACT
CCGAGCCGGATACCTACTTCTGCCGGAAGAGCAACTCCACAGGCCAACTG
GCCGAGAAGGTATCACCTCCGCCGCCCGCTGCCACCAACATTAGTTGCCT
CCGCCAGATGTACTGTCCGGAGTGCCACGAGCGATTGCACGAGCAGGGAG
TCCGCCTGGAGCGACTCCTTACCATGTGCTGCTTTGCCCTGCTGCCCATC
TATCCCTGCTGCCCGAGGCGCTCCACCAACGATTGCAAGGTCATCTGCGG
CAAGTGTGGTTACCTCTTGGGGGCATGGAAAAGACAGTGAAAGCTTTCTA
GACCAT
BS13267.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:15:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43325-RC | 474 | CG43325-PC | 1..474 | 17..490 | 2370 | 100 | Plus |
CG43325-RB | 474 | CG43325-PB | 1..474 | 17..490 | 2370 | 100 | Plus |
CG43325-RA | 474 | CG43325-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43326-RB | 1229 | CG43326-RB | 19..494 | 15..490 | 2380 | 100 | Plus |
CG43325-RC | 765 | CG43325-RC | 156..631 | 15..490 | 2380 | 100 | Plus |
CG43325-RB | 628 | CG30217-RB | 19..494 | 15..490 | 2380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22656617..22656980 | 378..15 | 1820 | 100 | Minus |
2R | 25286936 | 2R | 22656353..22656465 | 490..378 | 565 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:15:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6466..6506 | 81..41 | 106 | 73.2 | Minus |
BS13267.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:48 Download gff for
BS13267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30217-RA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:32 Download gff for
BS13267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30217-RA | 6..490 | 3..490 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:59 Download gff for
BS13267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43325-RA | 21..493 | 17..489 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:49 Download gff for
BS13267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30217-RA | 6..490 | 3..490 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:03 Download gff for
BS13267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43325-RB | 21..493 | 17..489 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:03 Download gff for
BS13267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22656354..22656464 | 379..489 | 100 | <- | Minus |
2R | 22656617..22656978 | 17..378 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:59 Download gff for
BS13267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18543859..18543969 | 379..489 | 100 | <- | Minus |
arm_2R | 18544122..18544483 | 17..378 | 100 | | Minus |
BS13267.pep Sequence
Translation from 16 to 489
> BS13267.pep
MSRQLKFHLQAPDDEEFAADLVEINLNPNCGQVKQKSAQALDQLLLATPP
HRGYPYGYAEDSEPDTYFCRKSNSTGQLAEKVSPPPPAATNISCLRQMYC
PECHERLHEQGVRLERLLTMCCFALLPIYPCCPRRSTNDCKVICGKCGYL
LGAWKRQ*
BS13267.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43325-PC | 157 | CG43325-PC | 1..157 | 1..157 | 871 | 100 | Plus |
CG43325-PB | 157 | CG30217-PB | 1..157 | 1..157 | 871 | 100 | Plus |
CG43325-PA | 157 | CG30217-PA | 1..157 | 1..157 | 871 | 100 | Plus |