Clone BS13267 Report

Search the DGRC for BS13267

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG43325-RA
Protein status:BS13267.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13267.5prime Sequence

504 bp (504 high quality bases) assembled on 2006-10-13

> BS13267.5prime
GAAGTTATCAGTCGACATGAGCCGTCAGCTAAAGTTCCACCTTCAAGCTC
CCGACGACGAGGAGTTCGCAGCGGATCTGGTGGAGATTAACCTGAACCCC
AACTGCGGCCAGGTCAAGCAGAAGTCGGCTCAGGCCTTGGACCAGCTGCT
CCTGGCCACGCCCCCACACAGAGGCTATCCCTACGGCTATGCCGAGGACT
CCGAGCCGGATACCTACTTCTGCCGGAAGAGCAACTCCACAGGCCAACTG
GCCGAGAAGGTATCACCTCCGCCGCCCGCTGCCACCAACATTAGTTGCCT
CCGCCAGATGTACTGTCCGGAGTGCCACGAGCGATTGCACGAGCAGGGAG
TCCGCCTGGAGCGACTCCTTACCATGTGCTGCTTTGCCCTGCTGCCCATC
TATCCCTGCTGCCCGAGGCGCTCCACCAACGATTGCAAGGTCATCTGCGG
CAAGTGTGGTTACCTCTTGGGGGCATGGAAAAGACAGTGAAAGCTTTCTA
GACC

BS13267.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG30217-PA 474 CG30217-RA 1..474 17..490 2370 100 Plus
CG30217-PB 819 CG30217-RB 1..442 17..458 2210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG43326-RB 1229 CG43326-RB 19..494 15..490 2380 100 Plus
CG43325-RC 765 CG43325-RC 156..631 15..490 2380 100 Plus
CG43325-RB 628 CG30217-RB 19..494 15..490 2380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22656617..22656980 378..15 1820 100 Minus
2R 25286936 2R 22656353..22656465 490..378 565 100 Minus
Blast to na_te.dros performed 2015-02-08 11:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6466..6506 81..41 106 73.2 Minus

BS13267.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:09 Download gff for BS13267.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30217-PA 1..474 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:45 Download gff for BS13267.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43325-RA 10..494 3..490 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:11 Download gff for BS13267.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43325-RB 10..494 3..490 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:11 Download gff for BS13267.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22656353..22656464 379..490 100 <- Minus
2R 22656617..22656989 3..378 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:45 Download gff for BS13267.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18543858..18543969 379..490 100 <- Minus
arm_2R 18544122..18544494 3..378 98   Minus

BS13267.3prime Sequence

504 bp (504 high quality bases) assembled on 2006-10-13

> BS13267.3prime
ATGGTCTAGAAAGCTTTCACTGTCTTTTCCATGCCCCCAAGAGGTAACCA
CACTTGCCGCAGATGACCTTGCAATCGTTGGTGGAGCGCCTCGGGCAGCA
GGGATAGATGGGCAGCAGGGCAAAGCAGCACATGGTAAGGAGTCGCTCCA
GGCGGACTCCCTGCTCGTGCAATCGCTCGTGGCACTCCGGACAGTACATC
TGGCGGAGGCAACTAATGTTGGTGGCAGCGGGCGGCGGAGGTGATACCTT
CTCGGCCAGTTGGCCTGTGGAGTTGCTCTTCCGGCAGAAGTAGGTATCCG
GCTCGGAGTCCTCGGCATAGCCGTAGGGATAGCCTCTGTGTGGGGGCGTG
GCCAGGAGCAGCTGGTCCAAGGCCTGAGCCGACTTCTGCTTGACCTGGCC
GCAGTTGGGGTTCAGGTTAATCTCCACCAGATCCGCTGCGAACTCCTCGT
CGTCGGGAGCTTGAAGGTGGAACTTTAGCTGACGGCTCATGTCGACTGAT
AACT

BS13267.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG30217-PA 474 CG30217-RA 1..474 490..17 2370 100 Minus
CG30217-PB 819 CG30217-RB 1..442 490..49 2210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG43326-RB 1229 CG43326-RB 19..494 492..17 2380 100 Minus
CG43325-RC 765 CG43325-RC 156..631 492..17 2380 100 Minus
CG43325-RB 628 CG30217-RB 19..494 492..17 2380 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22656617..22656980 129..492 1820 100 Plus
2R 25286936 2R 22656353..22656465 17..129 565 100 Plus
Blast to na_te.dros performed 2015-02-12 11:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6466..6506 426..466 106 73.2 Plus

BS13267.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:09 Download gff for BS13267.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30217-PA 1..474 17..490 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:42:55 Download gff for BS13267.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43325-RA 10..494 17..504 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:12 Download gff for BS13267.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43325-RB 10..494 17..504 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:12 Download gff for BS13267.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22656353..22656464 17..128 100 <- Plus
2R 22656617..22656989 129..504 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:42:55 Download gff for BS13267.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18543858..18543969 17..128 100 <- Plus
arm_2R 18544122..18544494 129..504 98   Plus

BS13267.complete Sequence

506 bp assembled on 2006-11-01

GenBank Submission: FJ637409

> BS13267.complete
GAAGTTATCAGTCGACATGAGCCGTCAGCTAAAGTTCCACCTTCAAGCTC
CCGACGACGAGGAGTTCGCAGCGGATCTGGTGGAGATTAACCTGAACCCC
AACTGCGGCCAGGTCAAGCAGAAGTCGGCTCAGGCCTTGGACCAGCTGCT
CCTGGCCACGCCCCCACACAGAGGCTATCCCTACGGCTATGCCGAGGACT
CCGAGCCGGATACCTACTTCTGCCGGAAGAGCAACTCCACAGGCCAACTG
GCCGAGAAGGTATCACCTCCGCCGCCCGCTGCCACCAACATTAGTTGCCT
CCGCCAGATGTACTGTCCGGAGTGCCACGAGCGATTGCACGAGCAGGGAG
TCCGCCTGGAGCGACTCCTTACCATGTGCTGCTTTGCCCTGCTGCCCATC
TATCCCTGCTGCCCGAGGCGCTCCACCAACGATTGCAAGGTCATCTGCGG
CAAGTGTGGTTACCTCTTGGGGGCATGGAAAAGACAGTGAAAGCTTTCTA
GACCAT

BS13267.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG43325-RC 474 CG43325-PC 1..474 17..490 2370 100 Plus
CG43325-RB 474 CG43325-PB 1..474 17..490 2370 100 Plus
CG43325-RA 474 CG43325-PA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG43326-RB 1229 CG43326-RB 19..494 15..490 2380 100 Plus
CG43325-RC 765 CG43325-RC 156..631 15..490 2380 100 Plus
CG43325-RB 628 CG30217-RB 19..494 15..490 2380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22656617..22656980 378..15 1820 100 Minus
2R 25286936 2R 22656353..22656465 490..378 565 100 Minus
Blast to na_te.dros performed 2014-11-27 08:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6466..6506 81..41 106 73.2 Minus

BS13267.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:48 Download gff for BS13267.complete
Subject Subject Range Query Range Percent Splice Strand
CG30217-RA 1..474 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:32 Download gff for BS13267.complete
Subject Subject Range Query Range Percent Splice Strand
CG30217-RA 6..490 3..490 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:59 Download gff for BS13267.complete
Subject Subject Range Query Range Percent Splice Strand
CG43325-RA 21..493 17..489 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:49 Download gff for BS13267.complete
Subject Subject Range Query Range Percent Splice Strand
CG30217-RA 6..490 3..490 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:03 Download gff for BS13267.complete
Subject Subject Range Query Range Percent Splice Strand
CG43325-RB 21..493 17..489 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:03 Download gff for BS13267.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22656354..22656464 379..489 100 <- Minus
2R 22656617..22656978 17..378 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:59 Download gff for BS13267.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18543859..18543969 379..489 100 <- Minus
arm_2R 18544122..18544483 17..378 100   Minus

BS13267.pep Sequence

Translation from 16 to 489

> BS13267.pep
MSRQLKFHLQAPDDEEFAADLVEINLNPNCGQVKQKSAQALDQLLLATPP
HRGYPYGYAEDSEPDTYFCRKSNSTGQLAEKVSPPPPAATNISCLRQMYC
PECHERLHEQGVRLERLLTMCCFALLPIYPCCPRRSTNDCKVICGKCGYL
LGAWKRQ*

BS13267.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG43325-PC 157 CG43325-PC 1..157 1..157 871 100 Plus
CG43325-PB 157 CG30217-PB 1..157 1..157 871 100 Plus
CG43325-PA 157 CG30217-PA 1..157 1..157 871 100 Plus