Clone Sequence Records
BS13270.3prime Sequence
574 bp (532 high quality bases) assembled on 2006-10-13
> BS13270.3prime
ATGGTCTAGAAAGCTTCTACTGTTCGCGCATATACAGATACAGATAGCCG
AGGTCCTTGGGTGGGTTCTGCGACTTGGCCACCTTGCTATCGTTGAAGAT
CACCCATTCGCCCTTCTTGCGAATGTGACAAACGTAGTGTCCCACCTGGG
CGGAGGTGCCCATGTGTGAGATGAATGCCACCAGGCGATACTTGCCGCGG
CCATCGCGGTAGTTGGTCTTATTTGGCGTCGAGGAGGCCGCTGCAGCTGA
TGAATTCGCAGCGGGGGCAGCATCCTCAACACCAATTGAATCGGCGTGCG
AGAAGATCCAGTCGGTGGCGCGCTCCACATTGCCATCGGTCGCTTTCAGA
GCAGCCACCGCCTGTCTTTCGTCGAAGCCCATGCTCATGAGCATGGCCAG
GCTCTCGGGATTGGCCACAAACTGGTTGGCGGCGCAGTCTCCAATGCTGT
TGTTCGGCACCACAAAGGGCTCCGAGATATCCTCGTCGGCGATGTGCTCC
ATCAACCAGTTGGAGGCTGCCTCAAGTCCGCTGTTTTTGGTGTGATAGCA
AGCACGCTTGCAGGCTTCCGGTGG
BS13270.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12082-PA | 2484 | CG12082-RA | 1927..2484 | 574..17 | 2790 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:56:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12082-RB | 2706 | CG12082-RB | 2053..2610 | 574..17 | 2790 | 100 | Minus |
| CG12082-RA | 2779 | CG12082-RA | 2126..2683 | 574..17 | 2790 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:56:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3145501..3146058 | 17..574 | 2790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:56:55 has no hits.
BS13270.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:11 Download gff for
BS13270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12082-PA | 1927..2484 | 17..574 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:47:38 Download gff for
BS13270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12082-RA | 2126..2688 | 13..574 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:23:17 Download gff for
BS13270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12082-RA | 2126..2688 | 13..574 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:23:17 Download gff for
BS13270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3145496..3146058 | 13..574 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:47:38 Download gff for
BS13270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3145496..3146058 | 13..574 | 99 | | Plus |
BS13270.5prime Sequence
554 bp (532 high quality bases) assembled on 2006-10-13
> BS13270.5prime
GAAGTTATCAGTCGACATGGAGGAACTACGCAAGCATTTATCCAAGGTGA
ACGTGCCATGCGCATCCGGGGCGGGCAGTCCTCCCATCTACAAGGACGAG
TGCGTCTACTCCTATGACAATCCCGAGACGCCCACCGGTTTGTACGTGTG
CCTGCACAGCTTTTTGGGCTTCGGCGAGGCGTATGTGCGGGAGTATGCCG
ACAAGACCGGCAACCGGGTCTTCCTCCACATCCAGCGGGTGAAGACGATC
AAGGAGGGCGCCGACATGGAGGCCGAATGCGCGGAGTCGGAGGCAGGACC
GGAACGGAAGATCACCCGCCTGGCCATTGGCGTCGAGGGCGGCTACAACG
AGTCGGACATGGCCAAGAAGTACGAGATCAAGGACACGTACAGCATCGTG
GTGGCTCCGCACCTGGATAAGAAGCTGCCCTATCCGGATCCAGAGCTGCC
CATGCGTGTCACCCAGTCGGTGGAAGCGATCCTGGCCGCCGACTCGGCAA
TTGCCAAGTTGGAGAAGGCCACGCTGATGGGCACCTGGGATGGTGAAGTG
CGTC
BS13270.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12082-PA | 2484 | CG12082-RA | 1..538 | 17..554 | 2690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12082-RB | 2706 | CG12082-RB | 127..664 | 17..554 | 2690 | 100 | Plus |
| CG12082-RA | 2779 | CG12082-RA | 200..737 | 17..554 | 2690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:06:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3147531..3148045 | 531..17 | 2575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:06:16 has no hits.
BS13270.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:11 Download gff for
BS13270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12082-PA | 1..538 | 17..554 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:40:52 Download gff for
BS13270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12082-RA | 196..737 | 13..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:40 Download gff for
BS13270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12082-RA | 196..737 | 13..554 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:40 Download gff for
BS13270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3147447..3147470 | 531..554 | 100 | <- | Minus |
| 3L | 3147532..3148049 | 13..530 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:40:52 Download gff for
BS13270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3147447..3147470 | 531..554 | 100 | <- | Minus |
| arm_3L | 3147532..3148049 | 13..530 | 99 | | Minus |
BS13270.complete Sequence
2516 bp assembled on 2008-08-15
GenBank Submission: KX805171
> BS13270.complete
GAAGTTATCAGTCGACATGGAGGAACTACGCAAGCATTTATCCAAGGTGA
ACGTGCCATGCGCATCCGGGGCGGGCAGTCCTCCCATCTACAAGGACGAG
TGCGTCTACTCCTATGACAATCCCGAGACGCCCACCGGTTTGTACGTGTG
CCTGCACAGCTTTTTGGGCTTCGGCGAGGCGTATGTGCGGGAGTATGCCG
ACAAGACCGGCAACCGGGTCTTCCTCCACATCCAGCGGGTGAAGACGATC
AAGGAGGGCGCCGACATGGAGGCCGAATGCGCGGAGTCGGAGGCAGGACC
GGAACGGAAGATCACCCGCCTGGCCATTGGCGTCGAGGGCGGCTACAACG
AGTCGGACATGGCCAAGAAGTACGAGATCAAGGACACGTACAGCATCGTG
GTGGCTCCGCACCTGGATAAGAAGCTGCCCTATCCGGATCCAGAGCTGCC
CATGCGTGTCACCCAGTCGGTGGAAGCGATCCTGGCCGCCGACTCGGCAA
TTGCCAAGTTGGAGAAGGCCACGCTGATGGGCACCTGGGATGGTGAAGTG
CGTCAGGCGTCGAAGTACGCAGATAACCTGCAGCAGCTGGATAATGGCAA
GAGGATTCCCCCATCCGGCTGGCAGTGCGAGAAGTGCGACTTGACCAACA
ACCTCTGGCTTAATCTGACCGATGGTTCGATCATGTGCGGACGCAAGTTC
TTTGACGGCAGTGGCGGCAACGATCACGCCGTGGAGCACTACAGAGTAAC
GGGTTTCCCGCTGGCGGTGAAACTGGGCACCATCACCGCTGATGGCAAGT
CGGATGTGTTCTCCTACCCGGAGGATGAAATGGTACTCGATCCACACTTA
GAGCGCCATCTCTCCCACTTTGGCATCAACATGGCGGCGATGAAGAAGAG
CGAGAAGTCGATGGTGGAGCTAGAGTTGGACATTAACCAGCGCATCGGCG
AGTGGACGGCGCTTACGGAGAGCGAAAGTGAGCTGCAGCCTGTTGCTGGT
CCTGGATACACTGGCATGCGCAATCTGGGCAACTCCTGCTACATAAACAG
CGTGATGCAAGTGCTCTTCGTCATCCCAGACTTCCAGCAGCGGTTCGTGG
GCACTGGAGCGGAACGCTATTTCAAAGAGTTTCCCAGCGACCCGGCCAAC
GACTTCAATATTCAAATGGCCAAGCTGGGAACTGGTCTGCAGTCGGGAAA
GTACAGCAGTATTGCCGAGAACACTTTGGACACCGATCACAGCACCGGAA
TATCGCCGGCCATGTTTAAGAACATTGTGGGCAAGAATCACCCAGATTTC
AGCACCAAACAGCAGCAAGATGCCAACGATTTCTATCTGCATTTGCTCAC
CCTGCTGGACAGGAATTCGCGGAACCAAACAAATCCCGCAGATGCTCTAA
AGTTCCTGCTGGAGGATCGCGTTGAGTGTCTGGCCAGCCACAAGGTGAAG
TACAATACCCGCGAGGAATACAGCTTCCGTCTGCCTGTTCCGTTGGACAA
GGCCACCAATCTGGATGAGGTGCGGGAGTTCCAGGAGCGTAAGAAGGCGG
CCCGCGAGACCGGACAACGGCTTCCGGATCGCGACATCGTGAGGCACAAG
GTGCCTCTACAGGCATGCCTGGAAAGGTTTTTCGGCCCGGAGCTGATCGA
GCAATTCTACTCCACTGCCATCGGGTCCAAGACGAATGCCAGGAAAATTA
CGCGATTGGCCACCATGCCCGACTGCCTGATGATTCACGTGGGAAAGTTC
ACGCTGGGCGACGACTGGGTGCCCAAGAAACTGGACGTTTCCGTAGACAT
GCCCGATGAACTGGATCTAAGTAACTGGCGCTCCGCTGGTGGCTTGCAGC
CTGGTGAGGAGGCTCTTCCCGAGCCCGCCACAGAGGAGGTGAAGTTTGCA
TTTGACGAGGCGGTCATGTCCGAGTTGCTGACCATGGGTTTTCCACCGGA
AGCCTGCAAGCGTGCTTGCTATCACACCAAAAACAGCGGACTTGAGGCAG
CCTCCAACTGGTTGATGGAGCACATCGCCGACGAGGATATCTCGGAGCCC
TTTGTGGTGCCGAACAACAGCATTGGAGACTGCGCCGCCAACCAGTTTGT
GGCCAATCCCGAGAGCCTGGCCATGCTCATGAGCATGGGCTTCGACGAAA
GACAGGCGGTGGCTGCTCTGAAAGCGACCGATGGCAATGTGGAGCGCGCC
ACCGACTGGATCTTCTCGCACGCCGATTCAATTGGTGTTGAGGATGCTGC
CCCCGCTGCGAATTCATCAGCTGCAGCGGCCTCCTCGACGCCAAATAAGA
CCAACTACCGCGATGGCCGCGGCAAGTATCGCCTGGTGGCATTCATCTCA
CACATGGGCACCTCCGCCCAGGTGGGACACTACGTTTGTCACATTCGCAA
GAAGGGCGAATGGGTGATCTTCAACGATAGCAAGGTGGCCAAGTCGCAGA
ACCCACCCAAGGACCTCGGCTATCTGTATCTGTATATGCGCGAACAGTAG
AAGCTTTCTAGACCAT
BS13270.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12082-RB | 2484 | CG12082-PB | 1..2484 | 17..2500 | 12420 | 100 | Plus |
| CG12082-RA | 2484 | CG12082-PA | 1..2484 | 17..2500 | 12420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12082-RB | 2706 | CG12082-RB | 127..2610 | 17..2500 | 12420 | 100 | Plus |
| CG12082-RA | 2779 | CG12082-RA | 200..2683 | 17..2500 | 12420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3145501..3147471 | 2500..530 | 9855 | 100 | Minus |
| 3L | 28110227 | 3L | 3147531..3148045 | 531..17 | 2575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:47:19 has no hits.
BS13270.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:51:29 Download gff for
BS13270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12082-RA | 196..2688 | 13..2504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:33 Download gff for
BS13270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12082-RA | 200..2683 | 17..2500 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:14 Download gff for
BS13270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12082-RA | 200..2683 | 17..2500 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:57 Download gff for
BS13270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12082-RA | 200..2683 | 17..2500 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:57 Download gff for
BS13270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3145501..3147470 | 531..2500 | 100 | <- | Minus |
| 3L | 3147532..3148045 | 17..530 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:33 Download gff for
BS13270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3145501..3147470 | 531..2500 | 100 | <- | Minus |
| arm_3L | 3147532..3148045 | 17..530 | 100 | | Minus |
BS13270.pep Sequence
Translation from 16 to 2499
> BS13270.pep
MEELRKHLSKVNVPCASGAGSPPIYKDECVYSYDNPETPTGLYVCLHSFL
GFGEAYVREYADKTGNRVFLHIQRVKTIKEGADMEAECAESEAGPERKIT
RLAIGVEGGYNESDMAKKYEIKDTYSIVVAPHLDKKLPYPDPELPMRVTQ
SVEAILAADSAIAKLEKATLMGTWDGEVRQASKYADNLQQLDNGKRIPPS
GWQCEKCDLTNNLWLNLTDGSIMCGRKFFDGSGGNDHAVEHYRVTGFPLA
VKLGTITADGKSDVFSYPEDEMVLDPHLERHLSHFGINMAAMKKSEKSMV
ELELDINQRIGEWTALTESESELQPVAGPGYTGMRNLGNSCYINSVMQVL
FVIPDFQQRFVGTGAERYFKEFPSDPANDFNIQMAKLGTGLQSGKYSSIA
ENTLDTDHSTGISPAMFKNIVGKNHPDFSTKQQQDANDFYLHLLTLLDRN
SRNQTNPADALKFLLEDRVECLASHKVKYNTREEYSFRLPVPLDKATNLD
EVREFQERKKAARETGQRLPDRDIVRHKVPLQACLERFFGPELIEQFYST
AIGSKTNARKITRLATMPDCLMIHVGKFTLGDDWVPKKLDVSVDMPDELD
LSNWRSAGGLQPGEEALPEPATEEVKFAFDEAVMSELLTMGFPPEACKRA
CYHTKNSGLEAASNWLMEHIADEDISEPFVVPNNSIGDCAANQFVANPES
LAMLMSMGFDERQAVAALKATDGNVERATDWIFSHADSIGVEDAAPAANS
SAAAASSTPNKTNYRDGRGKYRLVAFISHMGTSAQVGHYVCHIRKKGEWV
IFNDSKVAKSQNPPKDLGYLYLYMREQ*
BS13270.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12082-PB | 827 | CG12082-PB | 1..827 | 1..827 | 4362 | 100 | Plus |
| CG12082-PA | 827 | CG12082-PA | 1..827 | 1..827 | 4362 | 100 | Plus |
