Clone BS13271 Report

Search the DGRC for BS13271

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptHph-RC
Protein status:BS13271.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13271.3prime Sequence

795 bp (661 high quality bases) assembled on 2006-10-13

> BS13271.3prime
ATGGTCTAGAAAGCTTTTACGTGCATATTTCGCTGCTGGTGGCGCAGGAA
TTACTCGACACATTGGCGTTCAGCGCTCCCGTTCCCGTGGACATGCTAAC
CGGCAGACTGGATGCGGATGAAGCTGGTGCTGCGGGTGGTGTGGTGGTGG
AGTCTGGTTCAGCCTGTTGGGCTTGGGCTTGAGCTGCCAGATTGTTCGTC
TTGCTGTTTTCCAGCTTGGCCCTAATGAGGGCCTCCTCGCGTTCCTTGGC
ATCGAAGTACCAGACGGTGATGGCATAGCGGGTACGGTGAGCGGGCTGCA
CTTCGTGGGGATTCCGAATGTCAGACCAGAAGAATATCAGGCGATCAAAC
TTGGGCTCAATATCCGCCACTGTGGTTCCGGGTGTTGGCCGAATTCGCAG
AATGCCGCCACTTTCCCGCGCATCCCAGTTGATATTCAGGTAGTATATGG
CCGTTATAACGCGGCCATCCTTTTGGGGATTGTCCACATGCATGACGTAG
TGAGTTCCCGATCCCGGATAACAAGCGACCATTGCCCTCGTGCGCTCCCT
GATGTGGTAGTTGCCCAAGATGCCATTATCCTTCATCGTGTTAACACGAT
ACACCACAGAGTCAATCTGATTGGTCAGATACCAGACATTGCTGCAGCCC
GGCTCATTGCCACCAACCCACTTGATCTTATCGCCTCGGATCTTGTCACC
GCGCACCGCGGGTGCATCGGGCGTCTGGTTGGTCACCACTTGGCCATCCT
GAAAGGCTCCTGCGTTGTACATGCTTCGAACCTCGTTGAGGATCT

BS13271.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG31543-PB 837 Hph-RB 59..837 795..17 3870 99.8 Minus
CG31543-PC 1437 Hph-RC 659..1437 795..17 3870 99.8 Minus
CG31543-PA 978 Hph-RA 200..978 795..17 3870 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RD 3171 CG44015-RD 1187..1965 795..17 3880 99.9 Minus
Hph-RC 2496 CG44015-RC 1187..1965 795..17 3880 99.9 Minus
Hph-RA 2337 CG44015-RA 801..1579 795..17 3880 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5267461..5267840 396..17 1900 100 Minus
3R 32079331 3R 5266854..5267032 795..617 880 99.4 Minus
3R 32079331 3R 5267262..5267402 536..396 705 100 Minus
3R 32079331 3R 5267117..5267202 620..535 430 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:03:44 has no hits.

BS13271.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:12 Download gff for BS13271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31543-PA 200..978 17..795 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:12 Download gff for BS13271.3prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RB 361..1139 17..795 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:56 Download gff for BS13271.3prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 801..1579 17..795 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:56 Download gff for BS13271.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5266854..5267032 617..795 99 -> Minus
3R 5267121..5267201 536..616 100 -> Minus
3R 5267263..5267402 396..535 100 -> Minus
3R 5267462..5267836 21..395 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:12 Download gff for BS13271.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1092985..1093124 396..535 100 -> Minus
arm_3R 1092576..1092754 617..795 99 -> Minus
arm_3R 1092843..1092923 536..616 100 -> Minus
arm_3R 1093184..1093558 21..395 100 -> Minus

BS13271.5prime Sequence

779 bp (685 high quality bases) assembled on 2006-10-13

> BS13271.5prime
GAAGTTATCAGTCGACATGAGCAGGGGTCGCGGAAAGGTCAGGGATTCAG
CAAGCCATTCCGGCTCCCACTCCGCATCCAAATCGGCCATGGACCCGCCG
CGCTGCTCCATCTGCGGCACTCAGCAGCAACTACTGCGCTGCGCCAAGTG
CAAGGCCGTCTACTACTGCTCCCCCGCCCACCAGCATCTCCATTGGCCCG
ACCACCGCACCGAGTGCCGCCTCCTGACCCGCCAAAAGCTCAACAGCAGC
AACAACAATAAGCAGCAGCAGCGGCAGCAGATCCAGCAACTGCAACAAGC
TGTGGCATCTGCCAATCTGGAATGCAGCGGCGCCGGCGCCAACTGCTCCA
CCGCCCAGATGATGACGCCTGCCCACCAGGCGCAGAGTTGGCCCGCCGAG
GTAGACAACCTGCTGAATCTCCTCGGGCAGCCGGGCAGCCAGGAGAAGGC
TGCAGCTGCGGAAACGGAAACAGGTCAAAGGCAGCAGCAGCACCAGCATC
ATCACCATAATGGCGAAAAGAGCTCCAGCTATCAAATCGGTCTGGCGGAT
GCCAGCTTCATGGGATCAGGAAGTGAGCGCCGCTATGAGGATCTGTGCCG
TAACATCATCAGCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACT
TCCTGGGGATGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATG
TACAACGCAGGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCC
CGATGCACCCGCGGTGCGCGGTGACAAGA

BS13271.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31543-PC 1437 Hph-RC 1..763 17..779 3815 100 Plus
CG31543-PA 978 Hph-RA 98..304 573..779 1035 100 Plus
CG31543-PB 837 Hph-RB 1..163 617..779 815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RD 3171 CG44015-RD 529..1291 17..779 3815 100 Plus
Hph-RC 2496 CG44015-RC 529..1291 17..779 3815 100 Plus
Hph-RA 2337 CG44015-RA 699..905 573..779 1035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5257565..5258121 17..573 2785 100 Plus
3R 32079331 3R 5266751..5266958 572..779 1040 100 Plus
Blast to na_te.dros performed 2015-02-02 17:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2662 241..510 141 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2377 453..510 132 72.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2380 450..507 132 72.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2304..2393 441..531 119 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2296..2352 471..529 110 67.8 Plus

BS13271.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:12 Download gff for BS13271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31543-PC 1..762 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:29 Download gff for BS13271.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 529..1290 17..778 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:05 Download gff for BS13271.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 529..1290 17..778 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:05 Download gff for BS13271.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5257565..5258121 17..573 100 -> Plus
3R 5266753..5266957 574..778 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:29 Download gff for BS13271.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1083287..1083843 17..573 100 -> Plus
arm_3R 1092475..1092679 574..778 100   Plus

BS13271.complete Sequence

1469 bp assembled on 2006-11-01

GenBank Submission: FJ637410

> BS13271.complete
GAAGTTATCAGTCGACATGAGCAGGGGTCGCGGAAAGGTCAGGGATTCAG
CAAGCCATTCCGGCTCCCACTCCGCATCCAAATCGGCCATGGACCCGCCG
CGCTGCTCCATCTGCGGCACTCAGCAGCAACTACTGCGCTGCGCCAAGTG
CAAGGCCGTCTACTACTGCTCCCCCGCCCACCAGCATCTCCATTGGCCCG
ACCACCGCACCGAGTGCCGCCTCCTGACCCGCCAAAAGCTCAACAGCAGC
AACAACAATAAGCAGCAGCAGCGGCAGCAGATCCAGCAACTGCAACAAGC
TGTGGCATCTGCCAATCTGGAATGCAGCGGCGCCGGCGCCAACTGCTCCA
CCGCCCAGATGATGACGCCTGCCCACCAGGCGCAGAGTTGGCCCGCCGAG
GTAGACAACCTGCTGAATCTCCTCGGGCAGCCGGGCAGCCAGGAGAAGGC
TGCAGCTGCGGAAACGGAAACAGGTCAAAGGCAGCAGCAGCACCAGCATC
ATCACCATAATGGCGAAAAGAGCTCCAGCTATCAAATCGGTCTGGCGGAT
GCCAGCTTCATGGGATCAGGAAGTGAGCGCCGCTATGAGGATCTGTGCCG
TAACATCATCAGCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACT
TCCTGGGGATGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATG
TACAACGCAGGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCC
CGATGCACCCGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGT
GGGTTGGTGGCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAAT
CAGATTGACTCTGTGGTGTATCGTGTTAACACGATGAAGGATAATGGCAT
CTTGGGCAACTACCACATCAGGGAGCGCACGAGGGCAATGGTCGCTTGTT
ATCCGGGATCGGGAACTCACTACGTCATGCATGTGGACAATCCCCAAAAG
GATGGCCGCGTTATAACGGCCATATACTACCTGAATATCAACTGGGATGC
GCGGGAAAGTGGCGGCATTCTGCGAATTCGGCCAACACCCGGAACCACAG
TGGCGGATATTGAGCCCAAGTTTGATCGCCTGATATTCTTCTGGTCTGAC
ATTCGGAATCCCCACGAAGTGCAGCCCGCTCACCGTACCCGCTATGCCAT
CACCGTCTGGTACTTCGATGCCAAGGAACGCGAGGAGGCCCTCATTAGGG
CCAAGCTGGAAAACAGCAAGACGAACAATCTGGCAGCTCAAGCCCAAGCC
CAACAGGCTGAACCAGACTCCACCACCACACCACCCGCAGCACCAGCTTC
ATCCGCATCCAGTCTGCCGGTTAGCATGTCCACGGGAACGGGAGCGCTGA
ACGCCAATGTGTCGAGTAATTCCTGCGCCACCAGCAGCGAAATATGCACG
TAAAAGCTTTCTAGACCAT

BS13271.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RD 1437 CG44015-PD 1..1437 17..1453 7185 100 Plus
Hph-RC 1437 CG44015-PC 1..1437 17..1453 7185 100 Plus
Hph-RA 978 CG44015-PA 98..978 573..1453 4405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RD 3171 CG44015-RD 529..1965 17..1453 7185 100 Plus
Hph-RC 2496 CG44015-RC 529..1965 17..1453 7185 100 Plus
Hph-RA 2337 CG44015-RA 699..1579 573..1453 4405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5257565..5258121 17..573 2785 100 Plus
3R 32079331 3R 5267461..5267840 1074..1453 1900 100 Plus
3R 32079331 3R 5266751..5267032 572..853 1410 100 Plus
3R 32079331 3R 5267262..5267402 934..1074 705 100 Plus
3R 32079331 3R 5267117..5267202 850..935 430 100 Plus
Blast to na_te.dros performed 2014-11-28 08:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2662 241..510 141 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2377 453..510 132 72.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2380 450..507 132 72.4 Plus

BS13271.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:48 Download gff for BS13271.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 1..1437 17..1453 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:55 Download gff for BS13271.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 525..1959 17..1451 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:28 Download gff for BS13271.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 529..1963 17..1451 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:48 Download gff for BS13271.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 525..1961 17..1453 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:39 Download gff for BS13271.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 529..1963 17..1451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:39 Download gff for BS13271.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5257565..5258121 17..573 100 -> Plus
3R 5266753..5267032 574..853 100 -> Plus
3R 5267121..5267201 854..934 100 -> Plus
3R 5267263..5267402 935..1074 100 -> Plus
3R 5267462..5267838 1075..1451 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:28 Download gff for BS13271.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1092843..1092923 854..934 100 -> Plus
arm_3R 1092985..1093124 935..1074 100 -> Plus
arm_3R 1083287..1083843 17..573 100 -> Plus
arm_3R 1092475..1092754 574..853 100 -> Plus
arm_3R 1093184..1093560 1075..1451 100   Plus

BS13271.pep Sequence

Translation from 16 to 1452

> BS13271.pep
MSRGRGKVRDSASHSGSHSASKSAMDPPRCSICGTQQQLLRCAKCKAVYY
CSPAHQHLHWPDHRTECRLLTRQKLNSSNNNKQQQRQQIQQLQQAVASAN
LECSGAGANCSTAQMMTPAHQAQSWPAEVDNLLNLLGQPGSQEKAAAAET
ETGQRQQQHQHHHHNGEKSSSYQIGLADASFMGSGSERRYEDLCRNIISD
MNQYGLSVVDDFLGMETGLKILNEVRSMYNAGAFQDGQVVTNQTPDAPAV
RGDKIRGDKIKWVGGNEPGCSNVWYLTNQIDSVVYRVNTMKDNGILGNYH
IRERTRAMVACYPGSGTHYVMHVDNPQKDGRVITAIYYLNINWDARESGG
ILRIRPTPGTTVADIEPKFDRLIFFWSDIRNPHEVQPAHRTRYAITVWYF
DAKEREEALIRAKLENSKTNNLAAQAQAQQAEPDSTTTPPAAPASSASSL
PVSMSTGTGALNANVSSNSCATSSEICT*

BS13271.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-PD 478 CG44015-PD 1..478 1..478 2537 100 Plus
Hph-PC 478 CG44015-PC 1..478 1..478 2537 100 Plus
Hph-PA 325 CG44015-PA 34..325 187..478 1543 100 Plus
Hph-PB 278 CG44015-PB 1..278 201..478 1468 100 Plus