Clone Sequence Records
BS13274.3prime Sequence
650 bp (648 high quality bases) assembled on 2006-10-13
> BS13274.3prime
ATGGTCTAGAAAGCTTTTACTTTAATGAGGCCTTTTGGGCTTCGTACATT
GTTTTCATTTGTAGCAGACCCTTCCAGTTTTCATCCCATCCGGGTGTGAT
CTTTTTGGCATTGGCGTACCAACGTGCCACATTTGGATACTTGCTGATGT
CAAACTCAACCACTTCGAAAGTGGAAACGCTGGAGAGGATGGCGATGTCG
GCCACAGTTAGCTGGCTACCAGCCACGTAGTCCTGGCCCTCCAAGAAAAT
GTCCAGGAATTCAAAGGCAGCTTCGACCTTCTTATAATTCTCGGCATTCC
CAAGCTGACCAGTACGGATGAATGGGTAATAGTACTTCATAAAGGAGTCA
TGCAGGGTTCCCATATCGAAGTACAATCGCTGATTGATCAATGCGCGTTT
CTGGGGATCATTGGGAAAAAGGGAGTCGTCCTTGCCGTACTTTTCCACCA
GATAGACGGCTATGGCACGGGACTCCCAAATGGCGAATCCATTGTCCACC
AGCGTGGGAATGGTGTGCTGGGGATTGAGCTTAAGGAATTCTGGCTTGAG
GTGTTCCCCTTCTGTGATACGCAGTTGCTTTTTGTTCAGTTCCAGTCCAA
GAGCTTTGGCAACCATGATAATGGTGCGGGATCCACTGCTTCGAGGGGAG
BS13274.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11512-PA | 648 | GstD4-RA | 15..648 | 650..17 | 3170 | 100 | Minus |
CG4181-PA | 648 | GstD2-RA | 131..236 | 534..429 | 355 | 93.3 | Minus |
CG12242-PA | 651 | GstD5-RA | 133..236 | 532..429 | 320 | 92.3 | Minus |
CG4371-PA | 675 | GstD7-RA | 154..242 | 520..432 | 295 | 93.2 | Minus |
CG10045-PA | 630 | GstD1-RA | 140..185 | 528..483 | 205 | 97.8 | Minus |
CG10045-PB | 630 | GstD1-RB | 140..185 | 528..483 | 205 | 97.8 | Minus |
CG4381-PA | 600 | GstD3-RA | 106..155 | 511..462 | 150 | 92 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD4-RA | 725 | CG11512-RA | 68..701 | 650..17 | 3170 | 100 | Minus |
GstD2-RA | 734 | CG4181-RA | 58..623 | 634..69 | 940 | 78.2 | Minus |
GstD5-RA | 840 | CG12242-RA | 59..628 | 637..68 | 870 | 77.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12374167..12374800 | 650..17 | 3170 | 100 | Minus |
3R | 32079331 | 3R | 12372028..12372593 | 634..69 | 940 | 77.7 | Minus |
3R | 32079331 | 3R | 12375791..12376360 | 637..68 | 840 | 76.5 | Minus |
3R | 32079331 | 3R | 12378672..12379083 | 547..139 | 525 | 75.7 | Minus |
3R | 32079331 | 3R | 12373185..12373672 | 561..74 | 490 | 73.4 | Minus |
3R | 32079331 | 3R | 12368257..12368457 | 353..553 | 480 | 82.6 | Plus |
3R | 32079331 | 3R | 12364952..12365427 | 74..549 | 355 | 71.6 | Plus |
3R | 32079331 | 3R | 12380071..12380347 | 629..353 | 320 | 74.4 | Minus |
3R | 32079331 | 3R | 12366595..12366777 | 365..547 | 300 | 77.6 | Plus |
3R | 32079331 | 3R | 12377316..12377483 | 520..353 | 300 | 78.6 | Minus |
3R | 32079331 | 3R | 12367978..12368187 | 74..283 | 225 | 73.8 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:03:51 has no hits.
BS13274.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:13 Download gff for
BS13274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11512-PA | 15..648 | 17..650 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:15 Download gff for
BS13274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-RA | 66..701 | 12..650 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:59 Download gff for
BS13274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-RA | 68..703 | 12..650 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:59 Download gff for
BS13274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12374167..12374802 | 12..650 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:15 Download gff for
BS13274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8199889..8200524 | 12..650 | 99 | | Minus |
BS13274.5prime Sequence
678 bp (678 high quality bases) assembled on 2006-10-13
> BS13274.5prime
GAAGTTATCAGTCGACATGGATTTCTACTACTCCCCTCGAAGCAGTGGAT
CCCGCACCATTATCATGGTTGCCAAAGCTCTTGGACTGGAACTGAACAAA
AAGCAACTGCGTATCACAGAAGGGGAACACCTCAAGCCAGAATTCCTTAA
GCTCAATCCCCAGCACACCATTCCCACGCTGGTGGACAATGGATTCGCCA
TTTGGGAGTCCCGTGCCATAGCCGTCTATCTGGTGGAAAAGTACGGCAAG
GACGACTCCCTTTTTCCCAATGATCCCCAGAAACGCGCATTGATCAATCA
GCGATTGTACTTCGATATGGGAACCCTGCATGACTCCTTTATGAAGTACT
ATTACCCATTCATCCGTACTGGTCAGCTTGGGAATGCCGAGAATTATAAG
AAGGTCGAAGCTGCCTTTGAATTCCTGGACATTTTCTTGGAGGGCCAGGA
CTACGTGGCTGGTAGCCAGCTAACTGTGGCCGACATCGCCATCCTCTCCA
GCGTTTCCACTTTCGAAGTGGTTGAGTTTGACATCAGCAAGTATCCAAAT
GTGGCACGTTGGTACGCCAATGCCAAAAAGATCACACCCGGATGGGATGA
AAACTGGAAGGGTCTGCTACAAATGAAAACAATGTACGAAGCCCAAAAGG
CCTCATTAAAGTAAAAGCTTTCTAGACC
BS13274.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11512-PA | 648 | GstD4-RA | 1..648 | 17..664 | 3240 | 100 | Plus |
CG4181-PA | 648 | GstD2-RA | 131..236 | 147..252 | 355 | 93.3 | Plus |
CG12242-PA | 651 | GstD5-RA | 133..236 | 149..252 | 320 | 92.3 | Plus |
CG4371-PA | 675 | GstD7-RA | 154..242 | 161..249 | 295 | 93.2 | Plus |
CG10045-PA | 630 | GstD1-RA | 140..185 | 153..198 | 205 | 97.8 | Plus |
CG10045-PB | 630 | GstD1-RB | 140..185 | 153..198 | 205 | 97.8 | Plus |
CG4381-PA | 600 | GstD3-RA | 106..155 | 170..219 | 150 | 92 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD4-RA | 725 | CG11512-RA | 52..701 | 15..664 | 3250 | 100 | Plus |
GstD2-RA | 734 | CG4181-RA | 58..623 | 47..612 | 940 | 78.2 | Plus |
GstD5-RA | 840 | CG12242-RA | 28..628 | 13..613 | 920 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12374151..12374800 | 15..664 | 3250 | 100 | Plus |
3R | 32079331 | 3R | 12372028..12372593 | 47..612 | 940 | 77.7 | Plus |
3R | 32079331 | 3R | 12375760..12376360 | 13..613 | 890 | 76.5 | Plus |
3R | 32079331 | 3R | 12378672..12379083 | 134..542 | 525 | 75.7 | Plus |
3R | 32079331 | 3R | 12373185..12373672 | 120..607 | 490 | 73.4 | Plus |
3R | 32079331 | 3R | 12368257..12368457 | 328..128 | 480 | 82.6 | Minus |
3R | 32079331 | 3R | 12364952..12365427 | 607..132 | 355 | 71.6 | Minus |
3R | 32079331 | 3R | 12380071..12380347 | 52..328 | 320 | 74.4 | Plus |
3R | 32079331 | 3R | 12366595..12366777 | 316..134 | 300 | 77.6 | Minus |
3R | 32079331 | 3R | 12377316..12377483 | 161..328 | 300 | 78.6 | Plus |
3R | 32079331 | 3R | 12367978..12368187 | 607..398 | 225 | 73.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:01:38 has no hits.
BS13274.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:14 Download gff for
BS13274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11512-PA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:03 Download gff for
BS13274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-RA | 45..701 | 9..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:31 Download gff for
BS13274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-RA | 47..703 | 9..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:31 Download gff for
BS13274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12374146..12374802 | 9..669 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:03 Download gff for
BS13274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8199868..8200524 | 9..669 | 99 | | Plus |
BS13274.complete Sequence
680 bp assembled on 2006-11-01
GenBank Submission: FJ637411
> BS13274.complete
GAAGTTATCAGTCGACATGGATTTCTACTACTCCCCTCGAAGCAGTGGAT
CCCGCACCATTATCATGGTTGCCAAAGCTCTTGGACTGGAACTGAACAAA
AAGCAACTGCGTATCACAGAAGGGGAACACCTCAAGCCAGAATTCCTTAA
GCTCAATCCCCAGCACACCATTCCCACGCTGGTGGACAATGGATTCGCCA
TTTGGGAGTCCCGTGCCATAGCCGTCTATCTGGTGGAAAAGTACGGCAAG
GACGACTCCCTTTTTCCCAATGATCCCCAGAAACGCGCATTGATCAATCA
GCGATTGTACTTCGATATGGGAACCCTGCATGACTCCTTTATGAAGTACT
ATTACCCATTCATCCGTACTGGTCAGCTTGGGAATGCCGAGAATTATAAG
AAGGTCGAAGCTGCCTTTGAATTCCTGGACATTTTCTTGGAGGGCCAGGA
CTACGTGGCTGGTAGCCAGCTAACTGTGGCCGACATCGCCATCCTCTCCA
GCGTTTCCACTTTCGAAGTGGTTGAGTTTGACATCAGCAAGTATCCAAAT
GTGGCACGTTGGTACGCCAATGCCAAAAAGATCACACCCGGATGGGATGA
AAACTGGAAGGGTCTGCTACAAATGAAAACAATGTACGAAGCCCAAAAGG
CCTCATTAAAGTAAAAGCTTTCTAGACCAT
BS13274.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD4-RA | 648 | CG11512-PA | 1..648 | 17..664 | 3240 | 100 | Plus |
GstD2-RA | 648 | CG4181-PA | 31..596 | 47..612 | 940 | 77.7 | Plus |
GstD5-RA | 651 | CG12242-PA | 1..597 | 17..613 | 885 | 76.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD4-RA | 725 | CG11512-RA | 52..701 | 15..664 | 3250 | 100 | Plus |
GstD2-RA | 734 | CG4181-RA | 58..623 | 47..612 | 940 | 77.7 | Plus |
GstD5-RA | 840 | CG12242-RA | 28..628 | 13..613 | 890 | 76.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12374151..12374800 | 15..664 | 3250 | 100 | Plus |
3R | 32079331 | 3R | 12372028..12372593 | 47..612 | 940 | 77.7 | Plus |
3R | 32079331 | 3R | 12375760..12376360 | 13..613 | 890 | 76.5 | Plus |
3R | 32079331 | 3R | 12378672..12379083 | 134..542 | 525 | 75.7 | Plus |
3R | 32079331 | 3R | 12373185..12373672 | 120..607 | 490 | 73.4 | Plus |
3R | 32079331 | 3R | 12368257..12368457 | 328..128 | 480 | 82.6 | Minus |
3R | 32079331 | 3R | 12364952..12365427 | 607..132 | 355 | 71.6 | Minus |
3R | 32079331 | 3R | 12380071..12380347 | 52..328 | 320 | 74.4 | Plus |
3R | 32079331 | 3R | 12366595..12366777 | 316..134 | 300 | 77.6 | Minus |
3R | 32079331 | 3R | 12377316..12377483 | 161..328 | 300 | 78.6 | Plus |
3R | 32079331 | 3R | 12367978..12368187 | 607..398 | 225 | 73.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:37:31 has no hits.
BS13274.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:51 Download gff for
BS13274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-RA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:37 Download gff for
BS13274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-RA | 45..701 | 9..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:15 Download gff for
BS13274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-RA | 52..697 | 17..662 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:51 Download gff for
BS13274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-RA | 45..701 | 9..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:08 Download gff for
BS13274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-RA | 54..699 | 17..662 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:08 Download gff for
BS13274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12374153..12374798 | 17..662 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:15 Download gff for
BS13274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8199875..8200520 | 17..662 | 100 | | Plus |
BS13274.pep Sequence
Translation from 16 to 663
> BS13274.pep
MDFYYSPRSSGSRTIIMVAKALGLELNKKQLRITEGEHLKPEFLKLNPQH
TIPTLVDNGFAIWESRAIAVYLVEKYGKDDSLFPNDPQKRALINQRLYFD
MGTLHDSFMKYYYPFIRTGQLGNAENYKKVEAAFEFLDIFLEGQDYVAGS
QLTVADIAILSSVSTFEVVEFDISKYPNVARWYANAKKITPGWDENWKGL
LQMKTMYEAQKASLK*
BS13274.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD4-PA | 215 | CG11512-PA | 1..215 | 1..215 | 1123 | 100 | Plus |
GstD2-PA | 215 | CG4181-PA | 1..215 | 1..215 | 877 | 75.3 | Plus |
GstD5-PA | 216 | CG12242-PA | 1..215 | 1..215 | 877 | 72.6 | Plus |
GstD1-PB | 209 | CG10045-PB | 2..209 | 1..208 | 779 | 68.8 | Plus |
GstD1-PA | 209 | CG10045-PA | 2..209 | 1..208 | 779 | 68.8 | Plus |