Clone BS13274 Report

Search the DGRC for BS13274

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptGstD4-RA
Protein status:BS13274.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13274.3prime Sequence

650 bp (648 high quality bases) assembled on 2006-10-13

> BS13274.3prime
ATGGTCTAGAAAGCTTTTACTTTAATGAGGCCTTTTGGGCTTCGTACATT
GTTTTCATTTGTAGCAGACCCTTCCAGTTTTCATCCCATCCGGGTGTGAT
CTTTTTGGCATTGGCGTACCAACGTGCCACATTTGGATACTTGCTGATGT
CAAACTCAACCACTTCGAAAGTGGAAACGCTGGAGAGGATGGCGATGTCG
GCCACAGTTAGCTGGCTACCAGCCACGTAGTCCTGGCCCTCCAAGAAAAT
GTCCAGGAATTCAAAGGCAGCTTCGACCTTCTTATAATTCTCGGCATTCC
CAAGCTGACCAGTACGGATGAATGGGTAATAGTACTTCATAAAGGAGTCA
TGCAGGGTTCCCATATCGAAGTACAATCGCTGATTGATCAATGCGCGTTT
CTGGGGATCATTGGGAAAAAGGGAGTCGTCCTTGCCGTACTTTTCCACCA
GATAGACGGCTATGGCACGGGACTCCCAAATGGCGAATCCATTGTCCACC
AGCGTGGGAATGGTGTGCTGGGGATTGAGCTTAAGGAATTCTGGCTTGAG
GTGTTCCCCTTCTGTGATACGCAGTTGCTTTTTGTTCAGTTCCAGTCCAA
GAGCTTTGGCAACCATGATAATGGTGCGGGATCCACTGCTTCGAGGGGAG

BS13274.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11512-PA 648 GstD4-RA 15..648 650..17 3170 100 Minus
CG4181-PA 648 GstD2-RA 131..236 534..429 355 93.3 Minus
CG12242-PA 651 GstD5-RA 133..236 532..429 320 92.3 Minus
CG4371-PA 675 GstD7-RA 154..242 520..432 295 93.2 Minus
CG10045-PA 630 GstD1-RA 140..185 528..483 205 97.8 Minus
CG10045-PB 630 GstD1-RB 140..185 528..483 205 97.8 Minus
CG4381-PA 600 GstD3-RA 106..155 511..462 150 92 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
GstD4-RA 725 CG11512-RA 68..701 650..17 3170 100 Minus
GstD2-RA 734 CG4181-RA 58..623 634..69 940 78.2 Minus
GstD5-RA 840 CG12242-RA 59..628 637..68 870 77.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12374167..12374800 650..17 3170 100 Minus
3R 32079331 3R 12372028..12372593 634..69 940 77.7 Minus
3R 32079331 3R 12375791..12376360 637..68 840 76.5 Minus
3R 32079331 3R 12378672..12379083 547..139 525 75.7 Minus
3R 32079331 3R 12373185..12373672 561..74 490 73.4 Minus
3R 32079331 3R 12368257..12368457 353..553 480 82.6 Plus
3R 32079331 3R 12364952..12365427 74..549 355 71.6 Plus
3R 32079331 3R 12380071..12380347 629..353 320 74.4 Minus
3R 32079331 3R 12366595..12366777 365..547 300 77.6 Plus
3R 32079331 3R 12377316..12377483 520..353 300 78.6 Minus
3R 32079331 3R 12367978..12368187 74..283 225 73.8 Plus
Blast to na_te.dros performed on 2015-01-31 10:03:51 has no hits.

BS13274.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:13 Download gff for BS13274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11512-PA 15..648 17..650 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:15 Download gff for BS13274.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD4-RA 66..701 12..650 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:59 Download gff for BS13274.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD4-RA 68..703 12..650 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:59 Download gff for BS13274.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12374167..12374802 12..650 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:15 Download gff for BS13274.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8199889..8200524 12..650 99   Minus

BS13274.5prime Sequence

678 bp (678 high quality bases) assembled on 2006-10-13

> BS13274.5prime
GAAGTTATCAGTCGACATGGATTTCTACTACTCCCCTCGAAGCAGTGGAT
CCCGCACCATTATCATGGTTGCCAAAGCTCTTGGACTGGAACTGAACAAA
AAGCAACTGCGTATCACAGAAGGGGAACACCTCAAGCCAGAATTCCTTAA
GCTCAATCCCCAGCACACCATTCCCACGCTGGTGGACAATGGATTCGCCA
TTTGGGAGTCCCGTGCCATAGCCGTCTATCTGGTGGAAAAGTACGGCAAG
GACGACTCCCTTTTTCCCAATGATCCCCAGAAACGCGCATTGATCAATCA
GCGATTGTACTTCGATATGGGAACCCTGCATGACTCCTTTATGAAGTACT
ATTACCCATTCATCCGTACTGGTCAGCTTGGGAATGCCGAGAATTATAAG
AAGGTCGAAGCTGCCTTTGAATTCCTGGACATTTTCTTGGAGGGCCAGGA
CTACGTGGCTGGTAGCCAGCTAACTGTGGCCGACATCGCCATCCTCTCCA
GCGTTTCCACTTTCGAAGTGGTTGAGTTTGACATCAGCAAGTATCCAAAT
GTGGCACGTTGGTACGCCAATGCCAAAAAGATCACACCCGGATGGGATGA
AAACTGGAAGGGTCTGCTACAAATGAAAACAATGTACGAAGCCCAAAAGG
CCTCATTAAAGTAAAAGCTTTCTAGACC

BS13274.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11512-PA 648 GstD4-RA 1..648 17..664 3240 100 Plus
CG4181-PA 648 GstD2-RA 131..236 147..252 355 93.3 Plus
CG12242-PA 651 GstD5-RA 133..236 149..252 320 92.3 Plus
CG4371-PA 675 GstD7-RA 154..242 161..249 295 93.2 Plus
CG10045-PA 630 GstD1-RA 140..185 153..198 205 97.8 Plus
CG10045-PB 630 GstD1-RB 140..185 153..198 205 97.8 Plus
CG4381-PA 600 GstD3-RA 106..155 170..219 150 92 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
GstD4-RA 725 CG11512-RA 52..701 15..664 3250 100 Plus
GstD2-RA 734 CG4181-RA 58..623 47..612 940 78.2 Plus
GstD5-RA 840 CG12242-RA 28..628 13..613 920 77.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12374151..12374800 15..664 3250 100 Plus
3R 32079331 3R 12372028..12372593 47..612 940 77.7 Plus
3R 32079331 3R 12375760..12376360 13..613 890 76.5 Plus
3R 32079331 3R 12378672..12379083 134..542 525 75.7 Plus
3R 32079331 3R 12373185..12373672 120..607 490 73.4 Plus
3R 32079331 3R 12368257..12368457 328..128 480 82.6 Minus
3R 32079331 3R 12364952..12365427 607..132 355 71.6 Minus
3R 32079331 3R 12380071..12380347 52..328 320 74.4 Plus
3R 32079331 3R 12366595..12366777 316..134 300 77.6 Minus
3R 32079331 3R 12377316..12377483 161..328 300 78.6 Plus
3R 32079331 3R 12367978..12368187 607..398 225 73.8 Minus
Blast to na_te.dros performed on 2015-02-12 11:01:38 has no hits.

BS13274.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:14 Download gff for BS13274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11512-PA 1..648 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:03 Download gff for BS13274.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD4-RA 45..701 9..669 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:31 Download gff for BS13274.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD4-RA 47..703 9..669 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:31 Download gff for BS13274.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12374146..12374802 9..669 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:03 Download gff for BS13274.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8199868..8200524 9..669 99   Plus

BS13274.complete Sequence

680 bp assembled on 2006-11-01

GenBank Submission: FJ637411

> BS13274.complete
GAAGTTATCAGTCGACATGGATTTCTACTACTCCCCTCGAAGCAGTGGAT
CCCGCACCATTATCATGGTTGCCAAAGCTCTTGGACTGGAACTGAACAAA
AAGCAACTGCGTATCACAGAAGGGGAACACCTCAAGCCAGAATTCCTTAA
GCTCAATCCCCAGCACACCATTCCCACGCTGGTGGACAATGGATTCGCCA
TTTGGGAGTCCCGTGCCATAGCCGTCTATCTGGTGGAAAAGTACGGCAAG
GACGACTCCCTTTTTCCCAATGATCCCCAGAAACGCGCATTGATCAATCA
GCGATTGTACTTCGATATGGGAACCCTGCATGACTCCTTTATGAAGTACT
ATTACCCATTCATCCGTACTGGTCAGCTTGGGAATGCCGAGAATTATAAG
AAGGTCGAAGCTGCCTTTGAATTCCTGGACATTTTCTTGGAGGGCCAGGA
CTACGTGGCTGGTAGCCAGCTAACTGTGGCCGACATCGCCATCCTCTCCA
GCGTTTCCACTTTCGAAGTGGTTGAGTTTGACATCAGCAAGTATCCAAAT
GTGGCACGTTGGTACGCCAATGCCAAAAAGATCACACCCGGATGGGATGA
AAACTGGAAGGGTCTGCTACAAATGAAAACAATGTACGAAGCCCAAAAGG
CCTCATTAAAGTAAAAGCTTTCTAGACCAT

BS13274.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
GstD4-RA 648 CG11512-PA 1..648 17..664 3240 100 Plus
GstD2-RA 648 CG4181-PA 31..596 47..612 940 77.7 Plus
GstD5-RA 651 CG12242-PA 1..597 17..613 885 76.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
GstD4-RA 725 CG11512-RA 52..701 15..664 3250 100 Plus
GstD2-RA 734 CG4181-RA 58..623 47..612 940 77.7 Plus
GstD5-RA 840 CG12242-RA 28..628 13..613 890 76.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12374151..12374800 15..664 3250 100 Plus
3R 32079331 3R 12372028..12372593 47..612 940 77.7 Plus
3R 32079331 3R 12375760..12376360 13..613 890 76.5 Plus
3R 32079331 3R 12378672..12379083 134..542 525 75.7 Plus
3R 32079331 3R 12373185..12373672 120..607 490 73.4 Plus
3R 32079331 3R 12368257..12368457 328..128 480 82.6 Minus
3R 32079331 3R 12364952..12365427 607..132 355 71.6 Minus
3R 32079331 3R 12380071..12380347 52..328 320 74.4 Plus
3R 32079331 3R 12366595..12366777 316..134 300 77.6 Minus
3R 32079331 3R 12377316..12377483 161..328 300 78.6 Plus
3R 32079331 3R 12367978..12368187 607..398 225 73.8 Minus
Blast to na_te.dros performed on 2014-11-27 07:37:31 has no hits.

BS13274.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:51 Download gff for BS13274.complete
Subject Subject Range Query Range Percent Splice Strand
GstD4-RA 1..648 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:37 Download gff for BS13274.complete
Subject Subject Range Query Range Percent Splice Strand
GstD4-RA 45..701 9..669 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:15 Download gff for BS13274.complete
Subject Subject Range Query Range Percent Splice Strand
GstD4-RA 52..697 17..662 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:51 Download gff for BS13274.complete
Subject Subject Range Query Range Percent Splice Strand
GstD4-RA 45..701 9..669 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:08 Download gff for BS13274.complete
Subject Subject Range Query Range Percent Splice Strand
GstD4-RA 54..699 17..662 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:08 Download gff for BS13274.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12374153..12374798 17..662 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:15 Download gff for BS13274.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8199875..8200520 17..662 100   Plus

BS13274.pep Sequence

Translation from 16 to 663

> BS13274.pep
MDFYYSPRSSGSRTIIMVAKALGLELNKKQLRITEGEHLKPEFLKLNPQH
TIPTLVDNGFAIWESRAIAVYLVEKYGKDDSLFPNDPQKRALINQRLYFD
MGTLHDSFMKYYYPFIRTGQLGNAENYKKVEAAFEFLDIFLEGQDYVAGS
QLTVADIAILSSVSTFEVVEFDISKYPNVARWYANAKKITPGWDENWKGL
LQMKTMYEAQKASLK*

BS13274.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
GstD4-PA 215 CG11512-PA 1..215 1..215 1123 100 Plus
GstD2-PA 215 CG4181-PA 1..215 1..215 877 75.3 Plus
GstD5-PA 216 CG12242-PA 1..215 1..215 877 72.6 Plus
GstD1-PB 209 CG10045-PB 2..209 1..208 779 68.8 Plus
GstD1-PA 209 CG10045-PA 2..209 1..208 779 68.8 Plus