Clone BS13276 Report

Search the DGRC for BS13276

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG7781-RA
Protein status:BS13276.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13276.3prime Sequence

474 bp (474 high quality bases) assembled on 2006-10-13

> BS13276.3prime
ATGGTCTAGAAAGCTTTTAACGCTGCAGATACTGACGGGCGCTCAGCAGG
AGGCCCACCATGGCTGCCACGCCCAACGCCGATGCGCCCATCGCTCCGGC
TCCGTTGCAGTTATCCGTATCGCAGGAGCAGACCACCTGCCGACCACCAA
AACCGGCACGCTGATAGCAATAGTTGGTGGAGGTCTGATTCTGATAGGCA
CAGGTCCTAATCACACGGCTATCCGGGGGCAGGCTGTTCACCGAGAACTC
GATGATCTGCGTAATCTTGCGGCAGTATGTGGGTATTCCCTTGCCACGGG
ACGAGTACTGCTCATCGCAGTCCTTCAGCAGATTGTCCGGCGGTATGTCC
AGCGCACAGTTGGCGTCTTTGTGGCTGTTGCAGACAAAGCACTTGATGGC
ATATCCTTGCTGCACGGCGATGGCCAAAATCAGCGCACTAATCACATAGA
TGTACTGCATGTCGACTGATAACT

BS13276.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7781-PA 444 CG7781-RA 1..444 460..17 2220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7781-RB 1981 CG7781-RB 397..840 460..17 2220 100 Minus
CG7781-RA 1834 CG7781-RA 250..693 460..17 2220 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8322488..8322702 17..231 1075 100 Plus
2L 23513712 2L 8322774..8322949 232..407 880 100 Plus
2L 23513712 2L 8324958..8325013 405..460 280 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:13:21 has no hits.

BS13276.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:15 Download gff for BS13276.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7781-PA 1..444 17..460 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:44 Download gff for BS13276.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 250..693 17..460 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:32 Download gff for BS13276.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 250..693 17..460 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:32 Download gff for BS13276.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8322488..8322702 17..231 100 <- Plus
2L 8322774..8322947 232..405 100 <- Plus
2L 8324959..8325013 406..460 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:44 Download gff for BS13276.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8322774..8322947 232..405 100 <- Plus
arm_2L 8322488..8322702 17..231 100 <- Plus
arm_2L 8324959..8325013 406..460 100   Plus

BS13276.5prime Sequence

474 bp (474 high quality bases) assembled on 2006-10-13

> BS13276.5prime
GAAGTTATCAGTCGACATGCAGTACATCTATGTGATTAGTGCGCTGATTT
TGGCCATCGCCGTGCAGCAAGGATATGCCATCAAGTGCTTTGTCTGCAAC
AGCCACAAAGACGCCAACTGTGCGCTGGACATACCGCCGGACAATCTGCT
GAAGGACTGCGATGAGCAGTACTCGTCCCGTGGCAAGGGAATACCCACAT
ACTGCCGCAAGATTACGCAGATCATCGAGTTCTCGGTGAACAGCCTGCCC
CCGGATAGCCGTGTGATTAGGACCTGTGCCTATCAGAATCAGACCTCCAC
CAACTATTGCTATCAGCGTGCCGGTTTTGGTGGTCGGCAGGTGGTCTGCT
CCTGCGATACGGATAACTGCAACGGAGCCGGAGCGATGGGCGCATCGGCG
TTGGGCGTGGCAGCCATGGTGGGCCTCCTGCTGAGCGCCCGTCAGTATCT
GCAGCGTTAAAAGCTTTCTAGACC

BS13276.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7781-PA 444 CG7781-RA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7781-RB 1981 CG7781-RB 397..840 17..460 2220 100 Plus
CG7781-RA 1834 CG7781-RA 250..693 17..460 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8322488..8322702 460..246 1075 100 Minus
2L 23513712 2L 8322774..8322949 245..70 880 100 Minus
2L 23513712 2L 8324958..8325013 72..17 280 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:39:11 has no hits.

BS13276.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:15 Download gff for BS13276.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7781-PA 1..444 17..460 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:42 Download gff for BS13276.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 250..693 17..460 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:43:15 Download gff for BS13276.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 250..693 17..460 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:43:15 Download gff for BS13276.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8322488..8322702 246..460 100 <- Minus
2L 8322774..8322947 72..245 100 <- Minus
2L 8324959..8325013 17..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:42 Download gff for BS13276.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8322488..8322702 246..460 100 <- Minus
arm_2L 8322774..8322947 72..245 100 <- Minus
arm_2L 8324959..8325013 17..71 100   Minus

BS13276.complete Sequence

476 bp assembled on 2006-11-01

GenBank Submission: FJ637412

> BS13276.complete
GAAGTTATCAGTCGACATGCAGTACATCTATGTGATTAGTGCGCTGATTT
TGGCCATCGCCGTGCAGCAAGGATATGCCATCAAGTGCTTTGTCTGCAAC
AGCCACAAAGACGCCAACTGTGCGCTGGACATACCGCCGGACAATCTGCT
GAAGGACTGCGATGAGCAGTACTCGTCCCGTGGCAAGGGAATACCCACAT
ACTGCCGCAAGATTACGCAGATCATCGAGTTCTCGGTGAACAGCCTGCCC
CCGGATAGCCGTGTGATTAGGACCTGTGCCTATCAGAATCAGACCTCCAC
CAACTATTGCTATCAGCGTGCCGGTTTTGGTGGTCGGCAGGTGGTCTGCT
CCTGCGATACGGATAACTGCAACGGAGCCGGAGCGATGGGCGCATCGGCG
TTGGGCGTGGCAGCCATGGTGGGCCTCCTGCTGAGCGCCCGTCAGTATCT
GCAGCGTTAAAAGCTTTCTAGACCAT

BS13276.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7781-RB 444 CG7781-PB 1..444 17..460 2220 100 Plus
CG7781-RA 444 CG7781-PA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7781-RB 1981 CG7781-RB 397..840 17..460 2220 100 Plus
CG7781-RA 1834 CG7781-RA 250..693 17..460 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8322488..8322702 460..246 1075 100 Minus
2L 23513712 2L 8322774..8322949 245..70 880 100 Minus
2L 23513712 2L 8324958..8325013 72..17 280 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:12:13 has no hits.

BS13276.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:52 Download gff for BS13276.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 1..444 17..460 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:38 Download gff for BS13276.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 287..730 17..460 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:57 Download gff for BS13276.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 250..691 17..458 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:52 Download gff for BS13276.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 287..730 17..460 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:17 Download gff for BS13276.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 250..691 17..458 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:17 Download gff for BS13276.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8322490..8322702 246..458 100 <- Minus
2L 8322774..8322947 72..245 100 <- Minus
2L 8324959..8325013 17..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:57 Download gff for BS13276.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8322490..8322702 246..458 100 <- Minus
arm_2L 8322774..8322947 72..245 100 <- Minus
arm_2L 8324959..8325013 17..71 100   Minus

BS13276.pep Sequence

Translation from 16 to 459

> BS13276.pep
MQYIYVISALILAIAVQQGYAIKCFVCNSHKDANCALDIPPDNLLKDCDE
QYSSRGKGIPTYCRKITQIIEFSVNSLPPDSRVIRTCAYQNQTSTNYCYQ
RAGFGGRQVVCSCDTDNCNGAGAMGASALGVAAMVGLLLSARQYLQR*

BS13276.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7781-PB 147 CG7781-PB 1..147 1..147 779 100 Plus
CG7781-PA 147 CG7781-PA 1..147 1..147 779 100 Plus
CG14275-PB 148 CG14275-PB 6..144 3..141 147 29.5 Plus
CG14275-PA 148 CG14275-PA 6..144 3..141 147 29.5 Plus
crok-PA 151 CG17218-PA 7..142 5..140 146 32.7 Plus