Clone Sequence Records
BS13276.3prime Sequence
474 bp (474 high quality bases) assembled on 2006-10-13
> BS13276.3prime
ATGGTCTAGAAAGCTTTTAACGCTGCAGATACTGACGGGCGCTCAGCAGG
AGGCCCACCATGGCTGCCACGCCCAACGCCGATGCGCCCATCGCTCCGGC
TCCGTTGCAGTTATCCGTATCGCAGGAGCAGACCACCTGCCGACCACCAA
AACCGGCACGCTGATAGCAATAGTTGGTGGAGGTCTGATTCTGATAGGCA
CAGGTCCTAATCACACGGCTATCCGGGGGCAGGCTGTTCACCGAGAACTC
GATGATCTGCGTAATCTTGCGGCAGTATGTGGGTATTCCCTTGCCACGGG
ACGAGTACTGCTCATCGCAGTCCTTCAGCAGATTGTCCGGCGGTATGTCC
AGCGCACAGTTGGCGTCTTTGTGGCTGTTGCAGACAAAGCACTTGATGGC
ATATCCTTGCTGCACGGCGATGGCCAAAATCAGCGCACTAATCACATAGA
TGTACTGCATGTCGACTGATAACT
BS13276.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7781-PA | 444 | CG7781-RA | 1..444 | 460..17 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7781-RB | 1981 | CG7781-RB | 397..840 | 460..17 | 2220 | 100 | Minus |
CG7781-RA | 1834 | CG7781-RA | 250..693 | 460..17 | 2220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8322488..8322702 | 17..231 | 1075 | 100 | Plus |
2L | 23513712 | 2L | 8322774..8322949 | 232..407 | 880 | 100 | Plus |
2L | 23513712 | 2L | 8324958..8325013 | 405..460 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:13:21 has no hits.
BS13276.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:15 Download gff for
BS13276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-PA | 1..444 | 17..460 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:44 Download gff for
BS13276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-RA | 250..693 | 17..460 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:32 Download gff for
BS13276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-RA | 250..693 | 17..460 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:32 Download gff for
BS13276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8322488..8322702 | 17..231 | 100 | <- | Plus |
2L | 8322774..8322947 | 232..405 | 100 | <- | Plus |
2L | 8324959..8325013 | 406..460 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:44 Download gff for
BS13276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8322774..8322947 | 232..405 | 100 | <- | Plus |
arm_2L | 8322488..8322702 | 17..231 | 100 | <- | Plus |
arm_2L | 8324959..8325013 | 406..460 | 100 | | Plus |
BS13276.5prime Sequence
474 bp (474 high quality bases) assembled on 2006-10-13
> BS13276.5prime
GAAGTTATCAGTCGACATGCAGTACATCTATGTGATTAGTGCGCTGATTT
TGGCCATCGCCGTGCAGCAAGGATATGCCATCAAGTGCTTTGTCTGCAAC
AGCCACAAAGACGCCAACTGTGCGCTGGACATACCGCCGGACAATCTGCT
GAAGGACTGCGATGAGCAGTACTCGTCCCGTGGCAAGGGAATACCCACAT
ACTGCCGCAAGATTACGCAGATCATCGAGTTCTCGGTGAACAGCCTGCCC
CCGGATAGCCGTGTGATTAGGACCTGTGCCTATCAGAATCAGACCTCCAC
CAACTATTGCTATCAGCGTGCCGGTTTTGGTGGTCGGCAGGTGGTCTGCT
CCTGCGATACGGATAACTGCAACGGAGCCGGAGCGATGGGCGCATCGGCG
TTGGGCGTGGCAGCCATGGTGGGCCTCCTGCTGAGCGCCCGTCAGTATCT
GCAGCGTTAAAAGCTTTCTAGACC
BS13276.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7781-PA | 444 | CG7781-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:39:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7781-RB | 1981 | CG7781-RB | 397..840 | 17..460 | 2220 | 100 | Plus |
CG7781-RA | 1834 | CG7781-RA | 250..693 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8322488..8322702 | 460..246 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 8322774..8322949 | 245..70 | 880 | 100 | Minus |
2L | 23513712 | 2L | 8324958..8325013 | 72..17 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:39:11 has no hits.
BS13276.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:15 Download gff for
BS13276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-PA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:42 Download gff for
BS13276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-RA | 250..693 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:43:15 Download gff for
BS13276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-RA | 250..693 | 17..460 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:43:15 Download gff for
BS13276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8322488..8322702 | 246..460 | 100 | <- | Minus |
2L | 8322774..8322947 | 72..245 | 100 | <- | Minus |
2L | 8324959..8325013 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:42 Download gff for
BS13276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8322488..8322702 | 246..460 | 100 | <- | Minus |
arm_2L | 8322774..8322947 | 72..245 | 100 | <- | Minus |
arm_2L | 8324959..8325013 | 17..71 | 100 | | Minus |
BS13276.complete Sequence
476 bp assembled on 2006-11-01
GenBank Submission: FJ637412
> BS13276.complete
GAAGTTATCAGTCGACATGCAGTACATCTATGTGATTAGTGCGCTGATTT
TGGCCATCGCCGTGCAGCAAGGATATGCCATCAAGTGCTTTGTCTGCAAC
AGCCACAAAGACGCCAACTGTGCGCTGGACATACCGCCGGACAATCTGCT
GAAGGACTGCGATGAGCAGTACTCGTCCCGTGGCAAGGGAATACCCACAT
ACTGCCGCAAGATTACGCAGATCATCGAGTTCTCGGTGAACAGCCTGCCC
CCGGATAGCCGTGTGATTAGGACCTGTGCCTATCAGAATCAGACCTCCAC
CAACTATTGCTATCAGCGTGCCGGTTTTGGTGGTCGGCAGGTGGTCTGCT
CCTGCGATACGGATAACTGCAACGGAGCCGGAGCGATGGGCGCATCGGCG
TTGGGCGTGGCAGCCATGGTGGGCCTCCTGCTGAGCGCCCGTCAGTATCT
GCAGCGTTAAAAGCTTTCTAGACCAT
BS13276.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:12:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7781-RB | 444 | CG7781-PB | 1..444 | 17..460 | 2220 | 100 | Plus |
CG7781-RA | 444 | CG7781-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7781-RB | 1981 | CG7781-RB | 397..840 | 17..460 | 2220 | 100 | Plus |
CG7781-RA | 1834 | CG7781-RA | 250..693 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8322488..8322702 | 460..246 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 8322774..8322949 | 245..70 | 880 | 100 | Minus |
2L | 23513712 | 2L | 8324958..8325013 | 72..17 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:12:13 has no hits.
BS13276.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:52 Download gff for
BS13276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-RA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:38 Download gff for
BS13276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-RA | 287..730 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:57 Download gff for
BS13276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-RA | 250..691 | 17..458 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:52 Download gff for
BS13276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-RA | 287..730 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:17 Download gff for
BS13276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-RA | 250..691 | 17..458 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:17 Download gff for
BS13276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8322490..8322702 | 246..458 | 100 | <- | Minus |
2L | 8322774..8322947 | 72..245 | 100 | <- | Minus |
2L | 8324959..8325013 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:57 Download gff for
BS13276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8322490..8322702 | 246..458 | 100 | <- | Minus |
arm_2L | 8322774..8322947 | 72..245 | 100 | <- | Minus |
arm_2L | 8324959..8325013 | 17..71 | 100 | | Minus |
BS13276.pep Sequence
Translation from 16 to 459
> BS13276.pep
MQYIYVISALILAIAVQQGYAIKCFVCNSHKDANCALDIPPDNLLKDCDE
QYSSRGKGIPTYCRKITQIIEFSVNSLPPDSRVIRTCAYQNQTSTNYCYQ
RAGFGGRQVVCSCDTDNCNGAGAMGASALGVAAMVGLLLSARQYLQR*
BS13276.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7781-PB | 147 | CG7781-PB | 1..147 | 1..147 | 779 | 100 | Plus |
CG7781-PA | 147 | CG7781-PA | 1..147 | 1..147 | 779 | 100 | Plus |
CG14275-PB | 148 | CG14275-PB | 6..144 | 3..141 | 147 | 29.5 | Plus |
CG14275-PA | 148 | CG14275-PA | 6..144 | 3..141 | 147 | 29.5 | Plus |
crok-PA | 151 | CG17218-PA | 7..142 | 5..140 | 146 | 32.7 | Plus |