Clone Sequence Records
BS13277.3prime Sequence
734 bp (621 high quality bases) assembled on 2006-10-13
> BS13277.3prime
ATGGTCTAGAAAGCTTTCAATAGTAGAGACCTCGCATGCGGCGCGCGGAT
CCCTGGCGGTCGTACAGCATATTAAACTTGTTCACAAAGTGGTGCATATC
ATTGCAGCCCTTGGTCAGCGTGCCCAGGTAGCTAATCAGTCCCACATCGT
TGCACTGCGTGTAGAATTCCTCCTGGAAGGCGGGCACCTGCATGACGGGC
AGTCGGTGGCAGAGAGCGTAGGCTTCTCGCAGAATCTCTTGGTTGGCCCG
CAGCTTTCCGGCCTCCACATCGCGTATGTACTGCAGCACGATCTTGATGC
GTGTATTTAGCATCTTAATGGCACTGTCCTGGGCCACCAAATGCTCCGCC
ACCACGCTCTTCTCGCCGGACTCGTTCGAGGTCATGCGCGCCACATGATC
CACACCAATGCGCTCCGCCTCCTCGGTGGCCAGTGTGTAGGTGAGGGGCA
CGAACAGCATGGTGGCCTCGCCGTCCACCAGATCGATTAGGGACTCGAAT
AGCTTCAGGGGAAGGTGGTCGACGCTGCGGGAGAGCGGATTCAGCTGTAG
CATGATGGGGCACTCGTTGATGGCGGCTATCTGTCTTTGGATCTTAATGT
CATCGGCAGTGGGATTGTCGCCGGTTGTGTACCAGCCTATGAAGTCGAGA
TCACTGAACACCTGCTTGTACTGTTGTTCCTTCTTGTTGTAGTAGTCCTT
GTTGATCACTGTTTCATCGCCAATAACGTCCGTC
BS13277.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6932-PA | 1026 | CSN6-RA | 309..1026 | 734..17 | 3590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN6-RA | 1203 | CG6932-RA | 431..1148 | 734..17 | 3590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22581331..22581978 | 664..17 | 3240 | 100 | Minus |
3R | 32079331 | 3R | 22581203..22581278 | 734..659 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:41:14 has no hits.
BS13277.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:16 Download gff for
BS13277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6932-PA | 309..1026 | 17..734 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:07 Download gff for
BS13277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-RA | 431..1148 | 17..734 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:29 Download gff for
BS13277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-RA | 431..1148 | 17..734 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:29 Download gff for
BS13277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22581203..22581275 | 662..734 | 100 | -> | Minus |
3R | 22581334..22581978 | 17..661 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:07 Download gff for
BS13277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18406925..18406997 | 662..734 | 100 | -> | Minus |
arm_3R | 18407056..18407700 | 17..661 | 100 | | Minus |
BS13277.5prime Sequence
696 bp (676 high quality bases) assembled on 2006-10-13
> BS13277.5prime
GAAGTTATCAGTCGACATGGAGCAAATGGAAGTGGACGTTGACATGTCGG
CCAAGCCCAGCACATCGTCCTCCGCCGCCGCCGGGAGCAGTATGGCAGTG
GATAAGACTGCGGATCAAAACCCACAGCCGCAGGGAAACATAATGGCTGC
AGCGGGCACCAGTGGTTCTGTGACCATATCGCTGCATCCGCTGGTCATAA
TGAACATCTCCGAGCACTGGACACGCTTTCGTGCACAGCACGGTGAGCCG
CGACAGGTGTACGGAGCACTGATTGGCAAGCAGAAGGGCCGCAACATTGA
GATTATGAACTCGTTCGAACTGAAGACGGACGTTATTGGCGATGAAACAG
TGATCAACAAGGACTACTACAACAAGAAGGAACAACAGTACAAGCAGGTG
TTCAGTGATCTCGACTTCATAGGCTGGTACACAACCGGCGACAATCCCAC
TGCCGATGACATTAAGATCCAAAGACAGATAGCCGCCATCAACGAGTGCC
CCATCATGCTACAGCTGAATCCGCTCTCCCGCAGCGTCGACCACCTTCCC
CTGAAGCTATTCGAGTCCCTAATCGATCTGGTGGACGGCGAGGCCACCAT
GCTGTTCGTGCCCCTCACCTACACACTGGCCACCGAGGAGGCGGAGCGCA
TTGGTGTGGATCATGTGGCGCGCATGACCTCAAACGAGTCCGGCGA
BS13277.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6932-PA | 1026 | CSN6-RA | 1..680 | 17..696 | 3375 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:03:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN6-RA | 1203 | CG6932-RA | 122..802 | 16..696 | 3390 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:03:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22580894..22581278 | 16..400 | 1925 | 100 | Plus |
3R | 32079331 | 3R | 22581331..22581632 | 395..696 | 1495 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:03:27 has no hits.
BS13277.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:16 Download gff for
BS13277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6932-PA | 1..679 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:38 Download gff for
BS13277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-RA | 122..801 | 16..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:07 Download gff for
BS13277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-RA | 122..801 | 16..695 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:07 Download gff for
BS13277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22580894..22581275 | 16..397 | 100 | -> | Plus |
3R | 22581334..22581631 | 398..695 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:38 Download gff for
BS13277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18406616..18406997 | 16..397 | 100 | -> | Plus |
arm_3R | 18407056..18407353 | 398..695 | 99 | | Plus |
BS13277.complete Sequence
1058 bp assembled on 2006-11-01
GenBank Submission: FJ637413
> BS13277.complete
GAAGTTATCAGTCGACATGGAGCAAATGGAAGTGGACGTTGACATGTCGG
CCAAGCCCAGCACATCGTCCTCCGCCGCCGCCGGGAGCAGTATGGCAGTG
GATAAGACTGCGGATCAAAACCCACAGCCGCAGGGAAACATAATGGCTGC
AGCGGGCACCAGTGGTTCTGTGACCATATCGCTGCATCCGCTGGTCATAA
TGAACATCTCCGAGCACTGGACACGCTTTCGTGCACAGCACGGTGAGCCG
CGACAGGTGTACGGAGCACTGATTGGCAAGCAGAAGGGCCGCAACATTGA
GATTATGAACTCGTTCGAACTGAAGACGGACGTTATTGGCGATGAAACAG
TGATCAACAAGGACTACTACAACAAGAAGGAACAACAGTACAAGCAGGTG
TTCAGTGATCTCGACTTCATAGGCTGGTACACAACCGGCGACAATCCCAC
TGCCGATGACATTAAGATCCAAAGACAGATAGCCGCCATCAACGAGTGCC
CCATCATGCTACAGCTGAATCCGCTCTCCCGCAGCGTCGACCACCTTCCC
CTGAAGCTATTCGAGTCCCTAATCGATCTGGTGGACGGCGAGGCCACCAT
GCTGTTCGTGCCCCTCACCTACACACTGGCCACCGAGGAGGCGGAGCGCA
TTGGTGTGGATCATGTGGCGCGCATGACCTCGAACGAGTCCGGCGAGAAG
AGCGTGGTGGCGGAGCATTTGGTGGCCCAGGACAGTGCCATTAAGATGCT
AAATACACGCATCAAGATCGTGCTGCAGTACATACGCGATGTGGAGGCCG
GAAAGCTGCGGGCCAACCAAGAGATTCTGCGAGAAGCCTACGCTCTCTGC
CACCGACTGCCCGTCATGCAGGTGCCCGCCTTCCAGGAGGAATTCTACAC
GCAGTGCAACGATGTGGGACTGATTAGCTACCTGGGCACGCTGACCAAGG
GCTGCAATGATATGCACCACTTTGTGAACAAGTTTAATATGCTGTACGAC
CGCCAGGGATCCGCGCGCCGCATGCGAGGTCTCTACTATTGAAAGCTTTC
TAGACCAT
BS13277.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN6-RA | 1026 | CG6932-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN6-RA | 1203 | CG6932-RA | 122..1148 | 16..1042 | 5135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22581331..22581978 | 395..1042 | 3240 | 100 | Plus |
3R | 32079331 | 3R | 22580894..22581278 | 16..400 | 1925 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:36:23 has no hits.
BS13277.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:53 Download gff for
BS13277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-RA | 1..1026 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:40 Download gff for
BS13277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-RA | 120..1146 | 16..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:51 Download gff for
BS13277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-RA | 123..1147 | 17..1041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:53 Download gff for
BS13277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-RA | 120..1146 | 16..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:43 Download gff for
BS13277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-RA | 123..1147 | 17..1041 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:43 Download gff for
BS13277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22580895..22581275 | 17..397 | 100 | -> | Plus |
3R | 22581334..22581977 | 398..1041 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:51 Download gff for
BS13277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18406617..18406997 | 17..397 | 100 | -> | Plus |
arm_3R | 18407056..18407699 | 398..1041 | 100 | | Plus |
BS13277.pep Sequence
Translation from 16 to 1041
> BS13277.pep
MEQMEVDVDMSAKPSTSSSAAAGSSMAVDKTADQNPQPQGNIMAAAGTSG
SVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSF
ELKTDVIGDETVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIK
IQRQIAAINECPIMLQLNPLSRSVDHLPLKLFESLIDLVDGEATMLFVPL
TYTLATEEAERIGVDHVARMTSNESGEKSVVAEHLVAQDSAIKMLNTRIK
IVLQYIRDVEAGKLRANQEILREAYALCHRLPVMQVPAFQEEFYTQCNDV
GLISYLGTLTKGCNDMHHFVNKFNMLYDRQGSARRMRGLYY*
BS13277.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN6-PA | 341 | CG6932-PA | 1..341 | 1..341 | 1755 | 100 | Plus |
Rpn8-PC | 338 | CG3416-PC | 11..280 | 54..321 | 223 | 23 | Plus |
Rpn8-PA | 338 | CG3416-PA | 11..280 | 54..321 | 223 | 23 | Plus |
Rpn8-PB | 358 | CG3416-PB | 11..280 | 54..321 | 223 | 23 | Plus |