Clone BS13277 Report

Search the DGRC for BS13277

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCSN6-RA
Protein status:BS13277.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13277.3prime Sequence

734 bp (621 high quality bases) assembled on 2006-10-13

> BS13277.3prime
ATGGTCTAGAAAGCTTTCAATAGTAGAGACCTCGCATGCGGCGCGCGGAT
CCCTGGCGGTCGTACAGCATATTAAACTTGTTCACAAAGTGGTGCATATC
ATTGCAGCCCTTGGTCAGCGTGCCCAGGTAGCTAATCAGTCCCACATCGT
TGCACTGCGTGTAGAATTCCTCCTGGAAGGCGGGCACCTGCATGACGGGC
AGTCGGTGGCAGAGAGCGTAGGCTTCTCGCAGAATCTCTTGGTTGGCCCG
CAGCTTTCCGGCCTCCACATCGCGTATGTACTGCAGCACGATCTTGATGC
GTGTATTTAGCATCTTAATGGCACTGTCCTGGGCCACCAAATGCTCCGCC
ACCACGCTCTTCTCGCCGGACTCGTTCGAGGTCATGCGCGCCACATGATC
CACACCAATGCGCTCCGCCTCCTCGGTGGCCAGTGTGTAGGTGAGGGGCA
CGAACAGCATGGTGGCCTCGCCGTCCACCAGATCGATTAGGGACTCGAAT
AGCTTCAGGGGAAGGTGGTCGACGCTGCGGGAGAGCGGATTCAGCTGTAG
CATGATGGGGCACTCGTTGATGGCGGCTATCTGTCTTTGGATCTTAATGT
CATCGGCAGTGGGATTGTCGCCGGTTGTGTACCAGCCTATGAAGTCGAGA
TCACTGAACACCTGCTTGTACTGTTGTTCCTTCTTGTTGTAGTAGTCCTT
GTTGATCACTGTTTCATCGCCAATAACGTCCGTC

BS13277.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6932-PA 1026 CSN6-RA 309..1026 734..17 3590 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
CSN6-RA 1203 CG6932-RA 431..1148 734..17 3590 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22581331..22581978 664..17 3240 100 Minus
3R 32079331 3R 22581203..22581278 734..659 380 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:41:14 has no hits.

BS13277.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:16 Download gff for BS13277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6932-PA 309..1026 17..734 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:07 Download gff for BS13277.3prime
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 431..1148 17..734 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:29 Download gff for BS13277.3prime
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 431..1148 17..734 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:29 Download gff for BS13277.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22581203..22581275 662..734 100 -> Minus
3R 22581334..22581978 17..661 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:07 Download gff for BS13277.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18406925..18406997 662..734 100 -> Minus
arm_3R 18407056..18407700 17..661 100   Minus

BS13277.5prime Sequence

696 bp (676 high quality bases) assembled on 2006-10-13

> BS13277.5prime
GAAGTTATCAGTCGACATGGAGCAAATGGAAGTGGACGTTGACATGTCGG
CCAAGCCCAGCACATCGTCCTCCGCCGCCGCCGGGAGCAGTATGGCAGTG
GATAAGACTGCGGATCAAAACCCACAGCCGCAGGGAAACATAATGGCTGC
AGCGGGCACCAGTGGTTCTGTGACCATATCGCTGCATCCGCTGGTCATAA
TGAACATCTCCGAGCACTGGACACGCTTTCGTGCACAGCACGGTGAGCCG
CGACAGGTGTACGGAGCACTGATTGGCAAGCAGAAGGGCCGCAACATTGA
GATTATGAACTCGTTCGAACTGAAGACGGACGTTATTGGCGATGAAACAG
TGATCAACAAGGACTACTACAACAAGAAGGAACAACAGTACAAGCAGGTG
TTCAGTGATCTCGACTTCATAGGCTGGTACACAACCGGCGACAATCCCAC
TGCCGATGACATTAAGATCCAAAGACAGATAGCCGCCATCAACGAGTGCC
CCATCATGCTACAGCTGAATCCGCTCTCCCGCAGCGTCGACCACCTTCCC
CTGAAGCTATTCGAGTCCCTAATCGATCTGGTGGACGGCGAGGCCACCAT
GCTGTTCGTGCCCCTCACCTACACACTGGCCACCGAGGAGGCGGAGCGCA
TTGGTGTGGATCATGTGGCGCGCATGACCTCAAACGAGTCCGGCGA

BS13277.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6932-PA 1026 CSN6-RA 1..680 17..696 3375 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
CSN6-RA 1203 CG6932-RA 122..802 16..696 3390 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22580894..22581278 16..400 1925 100 Plus
3R 32079331 3R 22581331..22581632 395..696 1495 99.7 Plus
Blast to na_te.dros performed on 2015-02-10 21:03:27 has no hits.

BS13277.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:16 Download gff for BS13277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6932-PA 1..679 17..695 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:38 Download gff for BS13277.5prime
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 122..801 16..695 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:07 Download gff for BS13277.5prime
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 122..801 16..695 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:07 Download gff for BS13277.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22580894..22581275 16..397 100 -> Plus
3R 22581334..22581631 398..695 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:38 Download gff for BS13277.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18406616..18406997 16..397 100 -> Plus
arm_3R 18407056..18407353 398..695 99   Plus

BS13277.complete Sequence

1058 bp assembled on 2006-11-01

GenBank Submission: FJ637413

> BS13277.complete
GAAGTTATCAGTCGACATGGAGCAAATGGAAGTGGACGTTGACATGTCGG
CCAAGCCCAGCACATCGTCCTCCGCCGCCGCCGGGAGCAGTATGGCAGTG
GATAAGACTGCGGATCAAAACCCACAGCCGCAGGGAAACATAATGGCTGC
AGCGGGCACCAGTGGTTCTGTGACCATATCGCTGCATCCGCTGGTCATAA
TGAACATCTCCGAGCACTGGACACGCTTTCGTGCACAGCACGGTGAGCCG
CGACAGGTGTACGGAGCACTGATTGGCAAGCAGAAGGGCCGCAACATTGA
GATTATGAACTCGTTCGAACTGAAGACGGACGTTATTGGCGATGAAACAG
TGATCAACAAGGACTACTACAACAAGAAGGAACAACAGTACAAGCAGGTG
TTCAGTGATCTCGACTTCATAGGCTGGTACACAACCGGCGACAATCCCAC
TGCCGATGACATTAAGATCCAAAGACAGATAGCCGCCATCAACGAGTGCC
CCATCATGCTACAGCTGAATCCGCTCTCCCGCAGCGTCGACCACCTTCCC
CTGAAGCTATTCGAGTCCCTAATCGATCTGGTGGACGGCGAGGCCACCAT
GCTGTTCGTGCCCCTCACCTACACACTGGCCACCGAGGAGGCGGAGCGCA
TTGGTGTGGATCATGTGGCGCGCATGACCTCGAACGAGTCCGGCGAGAAG
AGCGTGGTGGCGGAGCATTTGGTGGCCCAGGACAGTGCCATTAAGATGCT
AAATACACGCATCAAGATCGTGCTGCAGTACATACGCGATGTGGAGGCCG
GAAAGCTGCGGGCCAACCAAGAGATTCTGCGAGAAGCCTACGCTCTCTGC
CACCGACTGCCCGTCATGCAGGTGCCCGCCTTCCAGGAGGAATTCTACAC
GCAGTGCAACGATGTGGGACTGATTAGCTACCTGGGCACGCTGACCAAGG
GCTGCAATGATATGCACCACTTTGTGAACAAGTTTAATATGCTGTACGAC
CGCCAGGGATCCGCGCGCCGCATGCGAGGTCTCTACTATTGAAAGCTTTC
TAGACCAT

BS13277.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
CSN6-RA 1026 CG6932-PA 1..1026 17..1042 5130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
CSN6-RA 1203 CG6932-RA 122..1148 16..1042 5135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22581331..22581978 395..1042 3240 100 Plus
3R 32079331 3R 22580894..22581278 16..400 1925 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:36:23 has no hits.

BS13277.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:53 Download gff for BS13277.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 1..1026 17..1042 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:40 Download gff for BS13277.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 120..1146 16..1042 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:51 Download gff for BS13277.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 123..1147 17..1041 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:53 Download gff for BS13277.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 120..1146 16..1042 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:43 Download gff for BS13277.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 123..1147 17..1041 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:43 Download gff for BS13277.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22580895..22581275 17..397 100 -> Plus
3R 22581334..22581977 398..1041 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:51 Download gff for BS13277.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18406617..18406997 17..397 100 -> Plus
arm_3R 18407056..18407699 398..1041 100   Plus

BS13277.pep Sequence

Translation from 16 to 1041

> BS13277.pep
MEQMEVDVDMSAKPSTSSSAAAGSSMAVDKTADQNPQPQGNIMAAAGTSG
SVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSF
ELKTDVIGDETVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIK
IQRQIAAINECPIMLQLNPLSRSVDHLPLKLFESLIDLVDGEATMLFVPL
TYTLATEEAERIGVDHVARMTSNESGEKSVVAEHLVAQDSAIKMLNTRIK
IVLQYIRDVEAGKLRANQEILREAYALCHRLPVMQVPAFQEEFYTQCNDV
GLISYLGTLTKGCNDMHHFVNKFNMLYDRQGSARRMRGLYY*

BS13277.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
CSN6-PA 341 CG6932-PA 1..341 1..341 1755 100 Plus
Rpn8-PC 338 CG3416-PC 11..280 54..321 223 23 Plus
Rpn8-PA 338 CG3416-PA 11..280 54..321 223 23 Plus
Rpn8-PB 358 CG3416-PB 11..280 54..321 223 23 Plus