Clone Sequence Records
BS13279.3prime Sequence
627 bp (568 high quality bases) assembled on 2006-10-13
> BS13279.3prime
ATGGTCTAGAAAGCTTTTAAAAGCCTGGGGCATAGCCCTGCATGTTCATG
CGCTCCAGGAAACCGCCGGATGGTGGATACAATCCCTGCATGTTGACCTG
AGGTGCTGGATACAATCCTGGATTGGCTCCACCGAATCCCTGCGGAGCGG
GATATAGACCCGGGCTAACGCCACCGAATCCTTGAGGTGCTGGATATATT
CCGGAACTGCCGCCAGCCAATCCCTGAACATTGGCCATATTGACAATATT
GTTCAGCGATTGAAAGTTATCTACGGCTGGATTGGGCACAAATCCATTAG
GCAGCTGGGGGTTGGGATACATCAGGGAGTTTCCATACATGGGTGCCACG
CCTGGGTAGCCGAATGAGCCAAAGGGATTGAAGCCAGGAACTGAACCAGT
CAGATTGGGATCCGGATACGAGGGATAGTTGTTGGCAATGTTCGTCTGCA
GACCGGGAACACCATTTAGGCCAGGTGCCGGCGCAAGGCCAGGATAGATC
AGACCCGGGTAGTTGGGATACCGCACCAACTGGCCACCGACCGAGCTCAG
GGCCATCTGGTTCATTGGCACACCCATGGTCATCGACATTGGTTGAGATC
CCGTCGCTGGAGTCACGTTGGCCACCA
BS13279.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13216-PA | 777 | CG13216-RA | 167..777 | 627..17 | 3030 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:46:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13216-RA | 888 | CG13216-RA | 199..809 | 627..17 | 3040 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:46:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11238187..11238797 | 17..627 | 3040 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:46:53 has no hits.
BS13279.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:17 Download gff for
BS13279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-PA | 168..777 | 17..626 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:39 Download gff for
BS13279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-RA | 200..818 | 10..626 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:17 Download gff for
BS13279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-RA | 200..818 | 10..626 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:17 Download gff for
BS13279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11238178..11238796 | 10..626 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:39 Download gff for
BS13279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7125683..7126301 | 10..626 | 99 | | Plus |
BS13279.5prime Sequence
660 bp (579 high quality bases) assembled on 2006-10-13
> BS13279.5prime
GAAGTTATCAGTCGACATGACCAAGTTCGTTGCGAAGAAAGCTATCCTGC
TGCTCTCCCTGCTCCTTCTGGGCACGGCGGAGTCAAAGCCACTGGATGCG
GAACAGCAGCATATCGATGATCAGCATGTGCGAAAGGAGCGTCAGCTGAA
GATGGCCGGTTCTGCGGATCCAGACGTTAAAATGGTGGCCAACGTGACTC
CAGCGACGGGATCTCAACCAATGTCGATGACCATGGGTGTGCCAATGAAC
CAGATGGCCCTGAGCTCGGTCGGTGGCCAGTTGGTGCGGTATCCCAACTA
CCCGGGTCTGATCTATCCTGGCCTTGCGCCGGCACCTGGCCTAAATGGTG
TTCCCGGTCTGCAGACGAACATTGCCAACAACTATCCCTCGTATCCGGAT
CCCAATCTGACTGGTTCAGTTCCTGGCTTCAATCCCTTTGGCTCATTCGG
CTACCCAGGCGTGGCACCCATGTATGGAAACTCCCTGATGTATCCCAACC
CCCAGCTGCCTAATGGATTTGTGCCCAATCCAGCCGTAGATAACTTTCAA
TCGCTGAACAATATTGTCAATATGGCCAATGTTCAGGGATTGGCTGGCGG
CAGTTCCGGAATATATCCAGCACCTCAAGGATTCGGTGGCGTTAGCCCGG
GTCTATATCC
BS13279.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13216-PA | 777 | CG13216-RA | 1..644 | 17..660 | 3195 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13216-RA | 888 | CG13216-RA | 29..676 | 13..660 | 3210 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11238320..11238967 | 660..13 | 3210 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:32:24 has no hits.
BS13279.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:17 Download gff for
BS13279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-PA | 1..644 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:41 Download gff for
BS13279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-RA | 29..676 | 13..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:18 Download gff for
BS13279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-RA | 29..676 | 13..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:18 Download gff for
BS13279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11238320..11238967 | 13..660 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:41 Download gff for
BS13279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7125825..7126472 | 13..660 | 99 | | Minus |
BS13279.complete Sequence
809 bp assembled on 2006-11-01
GenBank Submission: FJ637414
> BS13279.complete
GAAGTTATCAGTCGACATGACCAAGTTCGTTGCGAAGAAAGCTATCCTGC
TGCTCTCCCTGCTCCTTCTGGGCACGGCGGAGTCAAAGCCACTGGATGCG
GAACAGCAGCATATCGATGATCAGCATGTGCGAAAGGAGCGTCAGCTGAA
GATGGCCGGTTCTGCGGATCCAGACGTTAAAATGGTGGCCAACGTGACTC
CAGCGACGGGATCTCAACCAATGTCGATGACCATGGGTGTGCCAATGAAC
CAGATGGCCCTGAGCTCGGTCGGTGGCCAGTTGGTGCGGTATCCCAACTA
CCCGGGTCTGATCTATCCTGGCCTTGCGCCGGCACCTGGCCTAAATGGTG
TTCCCGGTCTGCAGACGAACATTGCCAACAACTATCCCTCGTATCCGGAT
CCCAATCTGACTGGTTCAGTTCCTGGCTTCAATCCCTTTGGCTCATTCGG
CTACCCAGGCGTGGCACCCATGTATGGAAACTCCCTGATGTATCCCAACC
CCCAGCTGCCTAATGGATTTGTGCCCAATCCAGCCGTAGATAACTTTCAA
TCGCTGAACAATATTGTCAATATGGCCAATGTTCAGGGATTGGCTGGCGG
CAGTTCCGGAATATATCCAGCACCTCAAGGATTCGGTGGCGTTAGCCCGG
GTCTATATCCCGCTCCGCAGGGATTCGGTGGAGCCAATCCAGGATTGTAT
CCAGCACCTCAGGTCAACATGCAGGGATTGTATCCACCATCCGGCGGTTT
CCTGGAGCGCATGAACATGCAGGGCTATGCCCCAGGCTTTTAAAAGCTTT
CTAGACCAT
BS13279.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13216-RA | 777 | CG13216-PA | 1..777 | 17..793 | 3870 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13216-RA | 888 | CG13216-RA | 29..809 | 13..793 | 3875 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:27:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11238187..11238967 | 793..13 | 3875 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:27:30 has no hits.
BS13279.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:55 Download gff for
BS13279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-RA | 1..777 | 17..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:41 Download gff for
BS13279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-RA | 28..817 | 13..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:25 Download gff for
BS13279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-RA | 33..807 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:55 Download gff for
BS13279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-RA | 28..817 | 13..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:58 Download gff for
BS13279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-RA | 33..807 | 17..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:58 Download gff for
BS13279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11238189..11238963 | 17..791 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:25 Download gff for
BS13279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7125694..7126468 | 17..791 | 99 | | Minus |
BS13279.pep Sequence
Translation from 16 to 792
> BS13279.pep
MTKFVAKKAILLLSLLLLGTAESKPLDAEQQHIDDQHVRKERQLKMAGSA
DPDVKMVANVTPATGSQPMSMTMGVPMNQMALSSVGGQLVRYPNYPGLIY
PGLAPAPGLNGVPGLQTNIANNYPSYPDPNLTGSVPGFNPFGSFGYPGVA
PMYGNSLMYPNPQLPNGFVPNPAVDNFQSLNNIVNMANVQGLAGGSSGIY
PAPQGFGGVSPGLYPAPQGFGGANPGLYPAPQVNMQGLYPPSGGFLERMN
MQGYAPGF*
BS13279.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13216-PA | 258 | CG13216-PA | 1..258 | 1..258 | 1379 | 100 | Plus |
