Clone Sequence Records
BS13280.3prime Sequence
597 bp (556 high quality bases) assembled on 2006-10-13
> BS13280.3prime
ATGGTCTAGAAAGCTTTTAGGCAGTCTTGGTCTCAACCTTCTTCTCGGTC
TCGGCCTCGATGGCGGTCTTGACCTCGGCTTGGGGCGCGGCATCGAGGAC
CACCTGGACAGGCGCCACCTGGGACTCGGCGGGCAGGGGCTCGGATTTCT
CCACCACAACCGATTCCTTGGCAACCACAGGCTCCTCCTTCTCCACTGGG
GCGGCTTCCTTCTCTACAGCAACTTCCTTATTGTCCAGTTCCTGGGAGCG
GGCCTTGCGATACTTCTGCTCATCCTCGGAAACCTTGGGCAGAAGGGCAG
CTGACTTGGCCAACTCGGTGATCTCCTTGGGAATGATGGTGCCAATGGGC
ACGAATCCGTTCTTTCCGGCGGTGTAGTGCACCTCCACGGTGTTGCCATC
GGCGTCGATGTAGCTGTACATACCGGACACCTCCAAGGCCTCGTCCTCGG
TGCCGGCGTTCTCGATCACTCCCTGCTCCTGGCGCACGGACTGGTCACCG
CCCTCGTAGCTGAAGTGGAAGGAGCCATCGGGGTTCTTGTTCGTCTCAAA
CCTCAACAGAGGCACAATCTCACGCTTCTCGGTGGTGCTGTCAACCT
BS13280.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13224-PA | 645 | CG13224-RA | 65..645 | 597..17 | 2880 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Eb-RA | 817 | CG13224-RA | 143..723 | 597..17 | 2890 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11255309..11255889 | 597..17 | 2890 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:02:21 has no hits.
BS13280.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:17 Download gff for
BS13280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13224-PA | 65..645 | 17..597 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:13 Download gff for
BS13280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Eb-RA | 143..734 | 5..597 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:37 Download gff for
BS13280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Eb-RA | 143..734 | 5..597 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:37 Download gff for
BS13280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11255309..11255900 | 5..597 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:13 Download gff for
BS13280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7142814..7143405 | 5..597 | 99 | | Minus |
BS13280.5prime Sequence
675 bp (604 high quality bases) assembled on 2006-10-13
> BS13280.5prime
GAAGTTATCAGTCGACATGTTCAAGATCGCCATCTGCTTGTTGGCCCTGG
TCGGCGGATCTCTGGCTGCCAGCATTGGCCAGGTTGACAGCACCACCGAG
AAGCGTGAGATTGTGCCTCTGCTGAGGTTTGAGACGAACAAGAACCCCGA
TGGCTCCTTCCACTTCAGCTACGAGGGCGGTGACCAGTCCGTGCGCCAGG
AGCAGGGAGTGATCGAGAACGCCGGCACCGAGGACGAGGCCTTGGAGGTG
TCCGGTATGTACAGCTACATCGACGCCGATGGCAACACCGTGGAGGTGCA
CTACACCGCCGGAAAGAACGGATTCGTGCCCATTGGCACCATCATTCCCA
AGGAGATCACCGAGTTGGCCAAGTCAGCTGCCCTTCTGCCCAAGGTTTCC
GAGGATGAGCAGAAGTATCGCAAGGCCCGCTCCCAGGAACTGGACAATAA
GGAAGTTGCTGTAGAGAAGGAAGCCGCCCCAGTGGAGAAGGAGGAGCCTG
TGGTTGCCAAGGAATCGGTTGTGGTGGAGAAATCCGAGCCCCTGCCCGCC
GAGTCCCAGGTGGCGCCTGTCCAGGTGGTCCTCGATGCCGCGCCCCAAGC
CGAGGTCAAGACCGCCATCGAGGCCGAAACCGAGAAAAAAGTTGAAACCA
AGACTGCCTAAAAGCTTTCTAAACC
BS13280.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13224-PA | 645 | CG13224-RA | 1..645 | 17..661 | 3125 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Eb-RA | 817 | CG13224-RA | 75..723 | 13..661 | 3170 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:42:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11255241..11255889 | 13..661 | 3170 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:42:48 has no hits.
BS13280.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:18 Download gff for
BS13280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13224-PA | 1..645 | 17..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:20 Download gff for
BS13280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Eb-RA | 72..737 | 9..675 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:41 Download gff for
BS13280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Eb-RA | 72..737 | 9..675 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:41 Download gff for
BS13280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11255238..11255903 | 9..675 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:20 Download gff for
BS13280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7142743..7143408 | 9..675 | 98 | | Plus |
BS13280.complete Sequence
677 bp assembled on 2006-11-01
GenBank Submission: FJ637415
> BS13280.complete
GAAGTTATCAGTCGACATGTTCAAGATCGCCATCTGCTTGTTGGCCCTGG
TCGGCGGATCTCTGGCTGCCAGCATTGGCCAGGTTGACAGCACCACCGAG
AAGCGTGAGATTGTGCCTCTGCTGAGGTTTGAGACGAACAAGAACCCCGA
TGGCTCCTTCCACTTCAGCTACGAGGGCGGTGACCAGTCCGTGCGCCAGG
AGCAGGGAGTGATCGAGAACGCCGGCACCGAGGACGAGGCCTTGGAGGTG
TCCGGTATGTACAGCTACATCGACGCCGATGGCAACACCGTGGAGGTGCA
CTACACCGCCGGAAAGAACGGATTCGTGCCCATTGGCACCATCATTCCCA
AGGAGATCACCGAGTTGGCCAAGTCAGCTGCCCTTCTGCCCAAGGTTTCC
GAGGATGAGCAGAAGTATCGCAAGGCCCGCTCCCAGGAACTGGACAATAA
GGAAGTTGCTGTAGAGAAGGAAGCCGCCCCAGTGGAGAAGGAGGAGCCTG
TGGTTGCCAAGGAATCGGTTGTGGTGGAGAAATCCGAGCCCCTGCCCGCC
GAGTCCCAGGTGGCGCCTGTCCAGGTGGTCCTCGATGCCGCGCCCCAAGC
CGAGGTCAAGACCGCCATCGAGGCCGAGACCGAGAAGAAGGTTGAGACCA
AGACTGCCTAAAAGCTTTCTAGACCAT
BS13280.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Eb-RA | 645 | CG13224-PA | 1..645 | 17..661 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:42:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Eb-RA | 817 | CG13224-RA | 75..723 | 13..661 | 3230 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11255241..11255889 | 13..661 | 3230 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:42:31 has no hits.
BS13280.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:05 Download gff for
BS13280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Eb-RA | 1..645 | 17..661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:58 Download gff for
BS13280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Eb-RA | 70..732 | 9..673 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:21 Download gff for
BS13280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Eb-RA | 84..721 | 22..659 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:06 Download gff for
BS13280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Eb-RA | 70..732 | 9..673 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:49 Download gff for
BS13280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Eb-RA | 84..721 | 22..659 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:49 Download gff for
BS13280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11255250..11255887 | 22..659 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:21 Download gff for
BS13280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7142755..7143392 | 22..659 | 100 | | Plus |
BS13280.pep Sequence
Translation from 16 to 660
> BS13280.pep
MFKIAICLLALVGGSLAASIGQVDSTTEKREIVPLLRFETNKNPDGSFHF
SYEGGDQSVRQEQGVIENAGTEDEALEVSGMYSYIDADGNTVEVHYTAGK
NGFVPIGTIIPKEITELAKSAALLPKVSEDEQKYRKARSQELDNKEVAVE
KEAAPVEKEEPVVAKESVVVEKSEPLPAESQVAPVQVVLDAAPQAEVKTA
IEAETEKKVETKTA*
BS13280.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Eb-PA | 214 | CG13224-PA | 1..214 | 1..214 | 1059 | 100 | Plus |
| Cpr47Ec-PA | 131 | CG9077-PA | 4..130 | 8..135 | 240 | 43.8 | Plus |
| Cpr78E-PA | 137 | CG7160-PA | 1..133 | 1..136 | 227 | 42.3 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 134..212 | 33..111 | 194 | 44.3 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 134..212 | 33..111 | 194 | 44.3 | Plus |
