Clone BS13281 Report

Search the DGRC for BS13281

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG42673-RB
Protein status:BS13281.pep: full length peptide match
Sequenced Size:2129

Clone Sequence Records

BS13281.3prime Sequence

578 bp (528 high quality bases) assembled on 2006-10-13

> BS13281.3prime
ATGGTCTAGAAAGCTTCTATTTGGTGGTGTGCCTCGCCCAGGTGGTCCTC
TGCACCTGGCTCATCATCTGGCTGCGATTGGGCACCTTCTCGCTGGTGCT
GCGTGTGATGAAACTGGGCGTGGCCGATAGCTTTCTTTGGTGACCCGCCT
CATCGGTGACCCTCAGCAAAACCGTATTGAATCGCGTTTCCCGACTGCTG
CTACTATTGCTATTGCTATTATTGTTGTGGTTCTGGTTGCCATTGCTGCT
TCCAGGACTAATGTTGTTATTGCTGCTCCTCAAACGTGGCGAGGATGGGG
AGTCCAGGGTGGAGGAGCTACGACTGGTATCCCGCGTGCTGGTCGATCCT
CCACAGGCCAGTCCAGCCAGATTGCCATTGGACACCGCCGCCTTGAGTTG
CTCCTCCAGATTATTCAGATTCTGCTCGATGCTCAGGCGTATATCCTCGT
TCAAGGACGAACTCCCGGCAAAGGAATTCCGATTCATGGTGCCCAACGGT
GAGGGGGTCAGTGTTCCCGTGGCTGCCGGTGAGGTTAGGAAATTGAAACC
TCCGGCTCCGCCAGCATTGTTTGTTGGC

BS13281.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG32048-PA 2097 CG32048-RA 1543..2097 571..17 2750 99.8 Minus
CG32048-PB 2715 CG32048-RB 2161..2715 571..17 2750 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG42673-RC 3902 CG32048-RB 2611..3176 578..13 2770 99.3 Minus
CG42673-RB 3618 CG32048-RA 2327..2892 578..13 2770 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9593218..9593783 578..13 2770 99.3 Minus
Blast to na_te.dros performed 2015-02-13 00:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 636..723 189..276 125 64.8 Plus

BS13281.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:18 Download gff for BS13281.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32048-PB 2154..2715 17..578 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:46:23 Download gff for BS13281.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42673-RB 2327..2892 13..578 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:38 Download gff for BS13281.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42673-RB 2327..2892 13..578 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:38 Download gff for BS13281.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9593218..9593783 13..578 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:46:23 Download gff for BS13281.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9586318..9586883 13..578 99   Minus

BS13281.5prime Sequence

507 bp (506 high quality bases) assembled on 2006-10-13

> BS13281.5prime
GAAGTTATCAGTCGACATGCCGTCGACGCCGTACGATCTGGTCCAGGATG
ACCAGGATCTGCGGGTGCCGCTGCACGCCGAGCAGGCCTTCTTCCACGGC
ATCACATTTCAGGCCAAGTTCGTTGGCTGGGAAGAGGTGCCACGACCGAA
CACTCGAGCCGAGATTGTTCAGGCCATGCGACGCATAAGGTACGAGTGCA
AAGTGCAGAATCTGAAGAAGCGAAAGGTCACCATTCACATATCGGTAAAT
GGCGTGCGCGTTGTGCTCAAAAAGCGCCGTCGAAAAAAAAAGAACTGGAC
CAATGACCCCGAGGACATCGAGTTGCTCAATCATCCCATCTATAGAATAT
TCTACGTGTCCCACGACAGCAGCGATCTCAAGATATTCAGCTACATAGCG
CGCGATGCCAGCACGGATACGTTCAAGTGTTCCGTCTTCAAAAGTCACAA
AAAGTCTCAGGCGATGCGCATCGTTCGCACCGTGGGACAAGCCTTTGAAG
TGTGCCA

BS13281.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG32048-PA 2097 CG32048-RA 1..491 17..507 2455 100 Plus
CG32048-PB 2715 CG32048-RB 1055..1109 453..507 275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG42673-RD 3582 CG42673-RD 792..1282 17..507 2455 100 Plus
CG42673-RB 3618 CG32048-RA 792..1282 17..507 2455 100 Plus
CG42673-RC 3902 CG32048-RB 1512..1566 453..507 275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9581546..9581713 287..454 840 100 Plus
3L 28110227 3L 9553435..9553536 17..118 510 100 Plus
3L 28110227 3L 9581390..9581486 190..286 485 100 Plus
3L 28110227 3L 9575649..9575722 117..190 370 100 Plus
3L 28110227 3L 9588238..9588292 453..507 275 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:59:45 has no hits.

BS13281.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:19 Download gff for BS13281.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32048-PA 1..490 17..506 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:01:18 Download gff for BS13281.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42673-RB 783..1281 6..506 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:45:18 Download gff for BS13281.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42673-RB 783..1281 6..506 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:45:18 Download gff for BS13281.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9581391..9581486 191..286 100 -> Plus
3L 9581546..9581713 287..454 100 -> Plus
3L 9588240..9588291 455..506 100   Plus
3L 9553426..9553536 6..118 96 -> Plus
3L 9575651..9575722 119..190 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:01:18 Download gff for BS13281.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9546526..9546636 6..118 96 -> Plus
arm_3L 9568751..9568822 119..190 100 -> Plus
arm_3L 9574491..9574586 191..286 100 -> Plus
arm_3L 9574646..9574813 287..454 100 -> Plus
arm_3L 9581340..9581391 455..506 100   Plus

BS13281.complete Sequence

2129 bp assembled on 2008-08-15

GenBank Submission: KX801150

> BS13281.complete
GAAGTTATCAGTCGACATGCCGTCGACGCCGTACGATCTGGTCCAGGATG
ACCAGGATCTGCGGGTGCCGCTGCACGCCGAGCAGGCCTTCTTCCACGGC
ATCACATTTCAGGCCAAGTTCGTTGGCTGGGAAGAGGTGCCACGACCGAA
CACTCGAGCCGAGATTGTTCAGGCCATGCGACGCATAAGGTACGAGTGCA
AAGTGCAGAATCTGAAGAAGCGAAAGGTCACCATTCACATATCGGTAAAT
GGCGTGCGCGTTGTGCTCAAAAAGCGCCGTCGAAAAAAAAAGAACTGGAC
CAATGACCCCGAGGACATCGAGTTGCTCAATCATCCCATCTATAGAATAT
TCTACGTGTCCCACGACAGCAGCGATCTCAAGATATTCAGCTACATAGCG
CGCGATGCCAGCACGGATACGTTCAAGTGTTCCGTCTTCAAAAGTCACAA
AAAGTCTCAGGCGATGCGCATCGTTCGCACCGTGGGACAAGCCTTTGAAG
TGTGCCACAAATTTAATCTTCATAAGAATTCCCTGGAACCCAATGACGAA
CGCTCCGATATATCCTCATCGGAGCTGCTGGACGTGGAGCAGATCAGCGA
GCAGCAGCTATCCGAGGATGGTGAACGCGGTGGTGGCGACAACGAGACGC
CCAAGAAAGAGCACTTGGCCATAACGCCCGATCTGAACCACACGCAGCCG
CAGCGGCCGAACCACTTGGATATAATGCCATCGCATTCGAGTCTACGCAA
ATCGAACAGCCTGCTGTGCGATGTGGACGACAAGTCGCCAGGCTCACCTT
CCTCGCCGCGCTCTGAGATCACTCAGCTGAAGGACCAGCTGGAGGCACAG
GCTCTGCAGACGCGCCAGGCTCTGGGTCAACTGATGCTGGTGCGGGAGCA
GCTCATCTCGGAGACCAATGCGCGCATCGAGGCACAGGCGCGCACCCAAC
AATTGCTGCAGCAGAACCGCGAGCTCCTGGAGCACCTGGCCTCTTTGGGG
GCCTACAATGAGCAGCAGACAGCCGGACTCACGTCGGCCAACATCGGAAT
GGCGCCACAGCAATCGCAGCTACAAATGCTGCTGCAGGCCACGAGCAACA
ACAACAATCTGGCCACGATCAACCAACAGATCAGCAATCTTGGCAGCATC
AATCAGCAGTTGACCTCGCTGAGTCACCAGCTGAGTGGCCTGAATCAGCA
GAGCCAGCACCTCCAGAATCTGCAGCAGCAGCAGCAACAACAGCAGCAGC
AGCAGCAGCAACAAACGCAGGCGGCACCGACTGCGGCCACGCCCCCTCCC
GCTGCGGGGGGCAGTAGTCCGTATCCGTCGATGAGTGCGCTGCAGAGCAT
CAGCAATCAGCTGCAGCAGCAGCAGCAACAACAGCAGCAGGACGCATTGT
CCAAGGATCTGTTCCAGGTGAATCAGGAGCTGTTGAATCGCCTGCAGGCA
CTGAACTTGAATGCCAATCCTGGCCAGAGCCAGCCAACGCCCTCGGCCAC
GGCGCACAACTCCTTCTTCTATGTGAATCCCTTGTCCTGCACACCGGCCA
CGCCAAACAACAATGCTGGCGGAGCCGGAGGTTTCAATTTCCTAACCTCA
CCGGCAGCCACGGGAACACTGACCCCCTCACCGTTGGGCACCATGAATCG
GAATTCCTTTGCCGGGAGTTCGTCCTTGAACGAGGATATACGCCTGAGCA
TCGAGCAGAATCTGAATAATCTGGAGGAGCAACTCAAGGCGGCGGTGTCC
AATGGCAATCTGGCTGGACTGGCCTGTGGAGGATCGACCAGCACGCGGGA
TACCAGTCGTAGCTCCTCCACCCTGGACTCCCCATCCTCGCCACGTTTGA
GGAGCAGCAATAACAACATTAGTCCTGGAAGCAGCAATGGCAACCAGAAC
CACAACAATAATAGCAATAGCAATAGTAGCAGCAGTCGGGAAACGCGATT
CAATACGGTTTTGCTGAGGGTCACCGATGAGGCGGGTCACCAAAGAAAGC
TATCGGCCACGCCCAGTTTCATCACACGCAGCACCAGCGAGAAGGTGCCC
AATCGCAGCCAGATGATGAGCCAGGTGCAGAGGACCACCTGGGCGAGGCA
CACCACCAAATAGAAGCTTTCTAGACCAT

BS13281.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG42673-RB 2097 CG42673-PB 1..2097 17..2113 10455 99.9 Plus
CG42673-RC 2715 CG42673-PC 1055..2715 453..2113 8275 99.9 Plus
CG42673-RD 1317 CG42673-PD 1..1049 17..1065 5215 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG42673-RB 3618 CG32048-RA 792..2892 17..2117 10460 99.9 Plus
CG42673-RC 3902 CG32048-RB 1512..3176 453..2117 8280 99.8 Plus
CG42673-RD 3582 CG42673-RD 792..1840 17..1065 5215 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9592725..9593783 1059..2117 5265 99.8 Plus
3L 28110227 3L 9588238..9588444 453..659 1020 99.5 Plus
3L 28110227 3L 9592085..9592257 766..938 865 100 Plus
3L 28110227 3L 9581546..9581713 287..454 840 100 Plus
3L 28110227 3L 9592332..9592456 936..1060 625 100 Plus
3L 28110227 3L 9591239..9591347 658..766 545 100 Plus
3L 28110227 3L 9553435..9553536 17..118 510 100 Plus
3L 28110227 3L 9581390..9581486 190..286 485 100 Plus
3L 28110227 3L 9575649..9575722 117..190 370 100 Plus
Blast to na_te.dros performed 2014-11-27 14:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 636..723 1941..1854 125 64.8 Minus

BS13281.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:22:51 Download gff for BS13281.complete
Subject Subject Range Query Range Percent Splice Strand
CG32048-RA 783..2892 6..2117 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:24 Download gff for BS13281.complete
Subject Subject Range Query Range Percent Splice Strand
CG42673-RB 792..2882 17..2107 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:24 Download gff for BS13281.complete
Subject Subject Range Query Range Percent Splice Strand
CG32048-RA 792..2882 17..2107 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:27 Download gff for BS13281.complete
Subject Subject Range Query Range Percent Splice Strand
CG42673-RB 792..2882 17..2107 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:27 Download gff for BS13281.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9581546..9581713 287..454 100 -> Plus
3L 9588240..9588444 455..659 99 -> Plus
3L 9591241..9591347 660..766 100 -> Plus
3L 9592086..9592256 767..937 100 -> Plus
3L 9592334..9592456 938..1060 100 -> Plus
3L 9553435..9553536 17..118 100 -> Plus
3L 9575651..9575722 119..190 100 -> Plus
3L 9581391..9581486 191..286 100 -> Plus
3L 9592727..9593773 1061..2107 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:24 Download gff for BS13281.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9546535..9546636 17..118 100 -> Plus
arm_3L 9568751..9568822 119..190 100 -> Plus
arm_3L 9574491..9574586 191..286 100 -> Plus
arm_3L 9574646..9574813 287..454 100 -> Plus
arm_3L 9581340..9581544 455..659 99 -> Plus
arm_3L 9584341..9584447 660..766 100 -> Plus
arm_3L 9585186..9585356 767..937 100 -> Plus
arm_3L 9585434..9585556 938..1060 100 -> Plus
arm_3L 9585827..9586873 1061..2107 99   Plus

BS13281.pep Sequence

Translation from 16 to 2112

> BS13281.pep
MPSTPYDLVQDDQDLRVPLHAEQAFFHGITFQAKFVGWEEVPRPNTRAEI
VQAMRRIRYECKVQNLKKRKVTIHISVNGVRVVLKKRRRKKKNWTNDPED
IELLNHPIYRIFYVSHDSSDLKIFSYIARDASTDTFKCSVFKSHKKSQAM
RIVRTVGQAFEVCHKFNLHKNSLEPNDERSDISSSELLDVEQISEQQLSE
DGERGGGDNETPKKEHLAITPDLNHTQPQRPNHLDIMPSHSSLRKSNSLL
CDVDDKSPGSPSSPRSEITQLKDQLEAQALQTRQALGQLMLVREQLISET
NARIEAQARTQQLLQQNRELLEHLASLGAYNEQQTAGLTSANIGMAPQQS
QLQMLLQATSNNNNLATINQQISNLGSINQQLTSLSHQLSGLNQQSQHLQ
NLQQQQQQQQQQQQQQTQAAPTAATPPPAAGGSSPYPSMSALQSISNQLQ
QQQQQQQQDALSKDLFQVNQELLNRLQALNLNANPGQSQPTPSATAHNSF
FYVNPLSCTPATPNNNAGGAGGFNFLTSPAATGTLTPSPLGTMNRNSFAG
SSSLNEDIRLSIEQNLNNLEEQLKAAVSNGNLAGLACGGSTSTRDTSRSS
STLDSPSSPRLRSSNNNISPGSSNGNQNHNNNSNSNSSSSRETRFNTVLL
RVTDEAGHQRKLSATPSFITRSTSEKVPNRSQMMSQVQRTTWARHTTK*

BS13281.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG42673-PB 698 CG32048-PA 1..698 1..698 3562 100 Plus
CG42673-PC 904 CG32048-PB 333..904 127..698 2806 97 Plus
CG42673-PD 438 CG42673-PD 1..350 1..350 1794 99.7 Plus
Pdp1-PC 570 CG17888-PC 17..306 380..646 188 29.6 Plus
Pdp1-PL 581 CG17888-PL 17..306 380..646 188 29.6 Plus