Clone Sequence Records
BS13281.3prime Sequence
578 bp (528 high quality bases) assembled on 2006-10-13
> BS13281.3prime
ATGGTCTAGAAAGCTTCTATTTGGTGGTGTGCCTCGCCCAGGTGGTCCTC
TGCACCTGGCTCATCATCTGGCTGCGATTGGGCACCTTCTCGCTGGTGCT
GCGTGTGATGAAACTGGGCGTGGCCGATAGCTTTCTTTGGTGACCCGCCT
CATCGGTGACCCTCAGCAAAACCGTATTGAATCGCGTTTCCCGACTGCTG
CTACTATTGCTATTGCTATTATTGTTGTGGTTCTGGTTGCCATTGCTGCT
TCCAGGACTAATGTTGTTATTGCTGCTCCTCAAACGTGGCGAGGATGGGG
AGTCCAGGGTGGAGGAGCTACGACTGGTATCCCGCGTGCTGGTCGATCCT
CCACAGGCCAGTCCAGCCAGATTGCCATTGGACACCGCCGCCTTGAGTTG
CTCCTCCAGATTATTCAGATTCTGCTCGATGCTCAGGCGTATATCCTCGT
TCAAGGACGAACTCCCGGCAAAGGAATTCCGATTCATGGTGCCCAACGGT
GAGGGGGTCAGTGTTCCCGTGGCTGCCGGTGAGGTTAGGAAATTGAAACC
TCCGGCTCCGCCAGCATTGTTTGTTGGC
BS13281.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32048-PA | 2097 | CG32048-RA | 1543..2097 | 571..17 | 2750 | 99.8 | Minus |
CG32048-PB | 2715 | CG32048-RB | 2161..2715 | 571..17 | 2750 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42673-RC | 3902 | CG32048-RB | 2611..3176 | 578..13 | 2770 | 99.3 | Minus |
CG42673-RB | 3618 | CG32048-RA | 2327..2892 | 578..13 | 2770 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9593218..9593783 | 578..13 | 2770 | 99.3 | Minus |
Blast to na_te.dros performed 2015-02-13 00:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 636..723 | 189..276 | 125 | 64.8 | Plus |
BS13281.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:18 Download gff for
BS13281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32048-PB | 2154..2715 | 17..578 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:46:23 Download gff for
BS13281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42673-RB | 2327..2892 | 13..578 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:38 Download gff for
BS13281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42673-RB | 2327..2892 | 13..578 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:38 Download gff for
BS13281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9593218..9593783 | 13..578 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:46:23 Download gff for
BS13281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9586318..9586883 | 13..578 | 99 | | Minus |
BS13281.5prime Sequence
507 bp (506 high quality bases) assembled on 2006-10-13
> BS13281.5prime
GAAGTTATCAGTCGACATGCCGTCGACGCCGTACGATCTGGTCCAGGATG
ACCAGGATCTGCGGGTGCCGCTGCACGCCGAGCAGGCCTTCTTCCACGGC
ATCACATTTCAGGCCAAGTTCGTTGGCTGGGAAGAGGTGCCACGACCGAA
CACTCGAGCCGAGATTGTTCAGGCCATGCGACGCATAAGGTACGAGTGCA
AAGTGCAGAATCTGAAGAAGCGAAAGGTCACCATTCACATATCGGTAAAT
GGCGTGCGCGTTGTGCTCAAAAAGCGCCGTCGAAAAAAAAAGAACTGGAC
CAATGACCCCGAGGACATCGAGTTGCTCAATCATCCCATCTATAGAATAT
TCTACGTGTCCCACGACAGCAGCGATCTCAAGATATTCAGCTACATAGCG
CGCGATGCCAGCACGGATACGTTCAAGTGTTCCGTCTTCAAAAGTCACAA
AAAGTCTCAGGCGATGCGCATCGTTCGCACCGTGGGACAAGCCTTTGAAG
TGTGCCA
BS13281.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:50:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32048-PA | 2097 | CG32048-RA | 1..491 | 17..507 | 2455 | 100 | Plus |
CG32048-PB | 2715 | CG32048-RB | 1055..1109 | 453..507 | 275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42673-RD | 3582 | CG42673-RD | 792..1282 | 17..507 | 2455 | 100 | Plus |
CG42673-RB | 3618 | CG32048-RA | 792..1282 | 17..507 | 2455 | 100 | Plus |
CG42673-RC | 3902 | CG32048-RB | 1512..1566 | 453..507 | 275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9581546..9581713 | 287..454 | 840 | 100 | Plus |
3L | 28110227 | 3L | 9553435..9553536 | 17..118 | 510 | 100 | Plus |
3L | 28110227 | 3L | 9581390..9581486 | 190..286 | 485 | 100 | Plus |
3L | 28110227 | 3L | 9575649..9575722 | 117..190 | 370 | 100 | Plus |
3L | 28110227 | 3L | 9588238..9588292 | 453..507 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:59:45 has no hits.
BS13281.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:19 Download gff for
BS13281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32048-PA | 1..490 | 17..506 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:01:18 Download gff for
BS13281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42673-RB | 783..1281 | 6..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:45:18 Download gff for
BS13281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42673-RB | 783..1281 | 6..506 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:45:18 Download gff for
BS13281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9581391..9581486 | 191..286 | 100 | -> | Plus |
3L | 9581546..9581713 | 287..454 | 100 | -> | Plus |
3L | 9588240..9588291 | 455..506 | 100 | | Plus |
3L | 9553426..9553536 | 6..118 | 96 | -> | Plus |
3L | 9575651..9575722 | 119..190 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:01:18 Download gff for
BS13281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9546526..9546636 | 6..118 | 96 | -> | Plus |
arm_3L | 9568751..9568822 | 119..190 | 100 | -> | Plus |
arm_3L | 9574491..9574586 | 191..286 | 100 | -> | Plus |
arm_3L | 9574646..9574813 | 287..454 | 100 | -> | Plus |
arm_3L | 9581340..9581391 | 455..506 | 100 | | Plus |
BS13281.complete Sequence
2129 bp assembled on 2008-08-15
GenBank Submission: KX801150
> BS13281.complete
GAAGTTATCAGTCGACATGCCGTCGACGCCGTACGATCTGGTCCAGGATG
ACCAGGATCTGCGGGTGCCGCTGCACGCCGAGCAGGCCTTCTTCCACGGC
ATCACATTTCAGGCCAAGTTCGTTGGCTGGGAAGAGGTGCCACGACCGAA
CACTCGAGCCGAGATTGTTCAGGCCATGCGACGCATAAGGTACGAGTGCA
AAGTGCAGAATCTGAAGAAGCGAAAGGTCACCATTCACATATCGGTAAAT
GGCGTGCGCGTTGTGCTCAAAAAGCGCCGTCGAAAAAAAAAGAACTGGAC
CAATGACCCCGAGGACATCGAGTTGCTCAATCATCCCATCTATAGAATAT
TCTACGTGTCCCACGACAGCAGCGATCTCAAGATATTCAGCTACATAGCG
CGCGATGCCAGCACGGATACGTTCAAGTGTTCCGTCTTCAAAAGTCACAA
AAAGTCTCAGGCGATGCGCATCGTTCGCACCGTGGGACAAGCCTTTGAAG
TGTGCCACAAATTTAATCTTCATAAGAATTCCCTGGAACCCAATGACGAA
CGCTCCGATATATCCTCATCGGAGCTGCTGGACGTGGAGCAGATCAGCGA
GCAGCAGCTATCCGAGGATGGTGAACGCGGTGGTGGCGACAACGAGACGC
CCAAGAAAGAGCACTTGGCCATAACGCCCGATCTGAACCACACGCAGCCG
CAGCGGCCGAACCACTTGGATATAATGCCATCGCATTCGAGTCTACGCAA
ATCGAACAGCCTGCTGTGCGATGTGGACGACAAGTCGCCAGGCTCACCTT
CCTCGCCGCGCTCTGAGATCACTCAGCTGAAGGACCAGCTGGAGGCACAG
GCTCTGCAGACGCGCCAGGCTCTGGGTCAACTGATGCTGGTGCGGGAGCA
GCTCATCTCGGAGACCAATGCGCGCATCGAGGCACAGGCGCGCACCCAAC
AATTGCTGCAGCAGAACCGCGAGCTCCTGGAGCACCTGGCCTCTTTGGGG
GCCTACAATGAGCAGCAGACAGCCGGACTCACGTCGGCCAACATCGGAAT
GGCGCCACAGCAATCGCAGCTACAAATGCTGCTGCAGGCCACGAGCAACA
ACAACAATCTGGCCACGATCAACCAACAGATCAGCAATCTTGGCAGCATC
AATCAGCAGTTGACCTCGCTGAGTCACCAGCTGAGTGGCCTGAATCAGCA
GAGCCAGCACCTCCAGAATCTGCAGCAGCAGCAGCAACAACAGCAGCAGC
AGCAGCAGCAACAAACGCAGGCGGCACCGACTGCGGCCACGCCCCCTCCC
GCTGCGGGGGGCAGTAGTCCGTATCCGTCGATGAGTGCGCTGCAGAGCAT
CAGCAATCAGCTGCAGCAGCAGCAGCAACAACAGCAGCAGGACGCATTGT
CCAAGGATCTGTTCCAGGTGAATCAGGAGCTGTTGAATCGCCTGCAGGCA
CTGAACTTGAATGCCAATCCTGGCCAGAGCCAGCCAACGCCCTCGGCCAC
GGCGCACAACTCCTTCTTCTATGTGAATCCCTTGTCCTGCACACCGGCCA
CGCCAAACAACAATGCTGGCGGAGCCGGAGGTTTCAATTTCCTAACCTCA
CCGGCAGCCACGGGAACACTGACCCCCTCACCGTTGGGCACCATGAATCG
GAATTCCTTTGCCGGGAGTTCGTCCTTGAACGAGGATATACGCCTGAGCA
TCGAGCAGAATCTGAATAATCTGGAGGAGCAACTCAAGGCGGCGGTGTCC
AATGGCAATCTGGCTGGACTGGCCTGTGGAGGATCGACCAGCACGCGGGA
TACCAGTCGTAGCTCCTCCACCCTGGACTCCCCATCCTCGCCACGTTTGA
GGAGCAGCAATAACAACATTAGTCCTGGAAGCAGCAATGGCAACCAGAAC
CACAACAATAATAGCAATAGCAATAGTAGCAGCAGTCGGGAAACGCGATT
CAATACGGTTTTGCTGAGGGTCACCGATGAGGCGGGTCACCAAAGAAAGC
TATCGGCCACGCCCAGTTTCATCACACGCAGCACCAGCGAGAAGGTGCCC
AATCGCAGCCAGATGATGAGCCAGGTGCAGAGGACCACCTGGGCGAGGCA
CACCACCAAATAGAAGCTTTCTAGACCAT
BS13281.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42673-RB | 2097 | CG42673-PB | 1..2097 | 17..2113 | 10455 | 99.9 | Plus |
CG42673-RC | 2715 | CG42673-PC | 1055..2715 | 453..2113 | 8275 | 99.9 | Plus |
CG42673-RD | 1317 | CG42673-PD | 1..1049 | 17..1065 | 5215 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42673-RB | 3618 | CG32048-RA | 792..2892 | 17..2117 | 10460 | 99.9 | Plus |
CG42673-RC | 3902 | CG32048-RB | 1512..3176 | 453..2117 | 8280 | 99.8 | Plus |
CG42673-RD | 3582 | CG42673-RD | 792..1840 | 17..1065 | 5215 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9592725..9593783 | 1059..2117 | 5265 | 99.8 | Plus |
3L | 28110227 | 3L | 9588238..9588444 | 453..659 | 1020 | 99.5 | Plus |
3L | 28110227 | 3L | 9592085..9592257 | 766..938 | 865 | 100 | Plus |
3L | 28110227 | 3L | 9581546..9581713 | 287..454 | 840 | 100 | Plus |
3L | 28110227 | 3L | 9592332..9592456 | 936..1060 | 625 | 100 | Plus |
3L | 28110227 | 3L | 9591239..9591347 | 658..766 | 545 | 100 | Plus |
3L | 28110227 | 3L | 9553435..9553536 | 17..118 | 510 | 100 | Plus |
3L | 28110227 | 3L | 9581390..9581486 | 190..286 | 485 | 100 | Plus |
3L | 28110227 | 3L | 9575649..9575722 | 117..190 | 370 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:43:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 636..723 | 1941..1854 | 125 | 64.8 | Minus |
BS13281.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:22:51 Download gff for
BS13281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32048-RA | 783..2892 | 6..2117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:24 Download gff for
BS13281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42673-RB | 792..2882 | 17..2107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:24 Download gff for
BS13281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32048-RA | 792..2882 | 17..2107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:27 Download gff for
BS13281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42673-RB | 792..2882 | 17..2107 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:27 Download gff for
BS13281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9581546..9581713 | 287..454 | 100 | -> | Plus |
3L | 9588240..9588444 | 455..659 | 99 | -> | Plus |
3L | 9591241..9591347 | 660..766 | 100 | -> | Plus |
3L | 9592086..9592256 | 767..937 | 100 | -> | Plus |
3L | 9592334..9592456 | 938..1060 | 100 | -> | Plus |
3L | 9553435..9553536 | 17..118 | 100 | -> | Plus |
3L | 9575651..9575722 | 119..190 | 100 | -> | Plus |
3L | 9581391..9581486 | 191..286 | 100 | -> | Plus |
3L | 9592727..9593773 | 1061..2107 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:24 Download gff for
BS13281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9546535..9546636 | 17..118 | 100 | -> | Plus |
arm_3L | 9568751..9568822 | 119..190 | 100 | -> | Plus |
arm_3L | 9574491..9574586 | 191..286 | 100 | -> | Plus |
arm_3L | 9574646..9574813 | 287..454 | 100 | -> | Plus |
arm_3L | 9581340..9581544 | 455..659 | 99 | -> | Plus |
arm_3L | 9584341..9584447 | 660..766 | 100 | -> | Plus |
arm_3L | 9585186..9585356 | 767..937 | 100 | -> | Plus |
arm_3L | 9585434..9585556 | 938..1060 | 100 | -> | Plus |
arm_3L | 9585827..9586873 | 1061..2107 | 99 | | Plus |
BS13281.pep Sequence
Translation from 16 to 2112
> BS13281.pep
MPSTPYDLVQDDQDLRVPLHAEQAFFHGITFQAKFVGWEEVPRPNTRAEI
VQAMRRIRYECKVQNLKKRKVTIHISVNGVRVVLKKRRRKKKNWTNDPED
IELLNHPIYRIFYVSHDSSDLKIFSYIARDASTDTFKCSVFKSHKKSQAM
RIVRTVGQAFEVCHKFNLHKNSLEPNDERSDISSSELLDVEQISEQQLSE
DGERGGGDNETPKKEHLAITPDLNHTQPQRPNHLDIMPSHSSLRKSNSLL
CDVDDKSPGSPSSPRSEITQLKDQLEAQALQTRQALGQLMLVREQLISET
NARIEAQARTQQLLQQNRELLEHLASLGAYNEQQTAGLTSANIGMAPQQS
QLQMLLQATSNNNNLATINQQISNLGSINQQLTSLSHQLSGLNQQSQHLQ
NLQQQQQQQQQQQQQQTQAAPTAATPPPAAGGSSPYPSMSALQSISNQLQ
QQQQQQQQDALSKDLFQVNQELLNRLQALNLNANPGQSQPTPSATAHNSF
FYVNPLSCTPATPNNNAGGAGGFNFLTSPAATGTLTPSPLGTMNRNSFAG
SSSLNEDIRLSIEQNLNNLEEQLKAAVSNGNLAGLACGGSTSTRDTSRSS
STLDSPSSPRLRSSNNNISPGSSNGNQNHNNNSNSNSSSSRETRFNTVLL
RVTDEAGHQRKLSATPSFITRSTSEKVPNRSQMMSQVQRTTWARHTTK*
BS13281.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42673-PB | 698 | CG32048-PA | 1..698 | 1..698 | 3562 | 100 | Plus |
CG42673-PC | 904 | CG32048-PB | 333..904 | 127..698 | 2806 | 97 | Plus |
CG42673-PD | 438 | CG42673-PD | 1..350 | 1..350 | 1794 | 99.7 | Plus |
Pdp1-PC | 570 | CG17888-PC | 17..306 | 380..646 | 188 | 29.6 | Plus |
Pdp1-PL | 581 | CG17888-PL | 17..306 | 380..646 | 188 | 29.6 | Plus |