Clone BS13283 Report

Search the DGRC for BS13283

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptTwdlE-RA
Protein status:BS13283.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13283.3prime Sequence

624 bp (583 high quality bases) assembled on 2006-10-13

> BS13283.3prime
ATGGTCTAGAAAGCTTCTAGTGGGATGGTGCCCCATACGAGCTGCTGGGA
GCAGAGGGTGCGGGCGGGGCAGCTGGAGCTCCGTACTCGGGCGCTGGAGG
CGCCACACTGTTGGGATAGGGTCCGGTCTCCTCCTTCTGGGTCTTGTAGC
GGATGAAGTACACCTCCGGCTTGCTGGGTTGGGTGGGAGCTGGCGTTGGG
ATAATGATCTCCGGCTGCTCCTCCGGCTTCTTGACTAGCACGTACACCAG
GGTCTTCTCTTCGTTCTGTGGGAACTGCGGTATTACAGGGGCGGTCGGTA
CTGGTGGAGATGGCGCCTTGATGAAGACGATCTTGTAGTGCTTCTGCGGA
GGTGGCACGTAAAGGGGTTTCCTGGGTGCCTGGTATTCCGGCTCTGGTGG
AGGTACATGGACGTAGACGTGCTTGTGAATCACCGGCGCCTGCTGGGGAG
GTCCGTACTGGGGCGCAGGGGCGCCGTAGCCTCCGCTGGGTCCACTTGGC
TGGTAGCTGCTGGAGGGGGGCGCACTGTACGAGTCACGAGGCGGCTCTGG
ACGAGCGGCCACCAGGGCAGCCAGGGCCATGAGGACCACTAACACACAAC
TGGAATGCATGTCGACTGATAACT

BS13283.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14534-PA 594 CG14534-RA 1..594 610..17 2970 100 Minus
CG5812-PA 861 GCR(ich)-RA 475..519 346..302 150 93.3 Minus
CG14254-PA 1083 CG14254-RA 471..510 347..308 150 95 Minus
CG8986-PA 597 CG8986-RA 293..326 345..312 145 97 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlE-RA 1346 CG14534-RA 140..733 610..17 2970 100 Minus
lectin-28C-RC 3044 CG7106-RC 1494..1853 17..376 1800 100 Plus
TwdlT-RA 1607 CG5812-RA 665..879 346..132 410 80.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7858570..7858929 17..376 1800 100 Plus
2L 23513712 2L 7860380..7860602 371..593 1115 100 Plus
3R 32079331 3R 27050062..27050276 346..132 370 78.1 Minus
2R 25286936 2R 11862730..11862834 152..256 180 78.1 Plus
Blast to na_te.dros performed on 2015-02-10 17:22:07 has no hits.

BS13283.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:20 Download gff for BS13283.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14534-PA 1..594 17..610 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:41 Download gff for BS13283.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 131..739 9..618 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:47 Download gff for BS13283.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 131..739 9..618 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:47 Download gff for BS13283.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7860381..7860601 372..592 100 <- Plus
2L 7858564..7858924 9..371 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:41 Download gff for BS13283.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7858564..7858924 9..371 98 <- Plus
arm_2L 7860381..7860601 372..592 100 <- Plus

BS13283.5prime Sequence

624 bp (618 high quality bases) assembled on 2006-10-13

> BS13283.5prime
GAAGTTATCAGTCGACATGCATTCCAGTTGTGTGTTAGTGGTCCTCATGG
CCCTGGCTGCCCTGGTGGCCGCTCGTCCAGAGCCGCCTCGTGACTCGTAC
AGTGCGCCCCCCTCCAGCAGCTACCAGCCAAGTGGACCCAGCGGAGGCTA
CGGCGCCCCTGCGCCCCAGTACGGACCTCCCCAGCAGGCGCCGGTGATTC
ACAAGCACGTCTACGTCCATGTACCTCCACCAGAGCCGGAATACCAGGCA
CCCAGGAAACCCCTTTACGTGCCACCTCCGCAGAAGCACTACAAGATCGT
CTTCATCAAGGCGCCATCTCCACCAGTACCGACCGCCCCTGTAATACCGC
AGTTCCCACAGAACGAAGAGAAGACCCTGGTGTACGTGCTAGTCAAGAAG
CCGGAGGAGCAGCCGGAGATCATTATCCCAACGCCAGCTCCCACCCAACC
CAGCAAGCCGGAGGTGTACTTCATCCGCTACAAGACCCAGAAGGAGGAGA
CCGGACCCTATCCCAACAGTGTGGCGCCTCCAGCGCCCGAGTACGGAGCT
CCAGCTGCCCCGCCCGCACCCTCTGCTCCCAGCAGCTCGTATGGGGCACC
ATCCCACTAGAAGCTTTCTAGACC

BS13283.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14534-PA 594 CG14534-RA 1..594 17..610 2970 100 Plus
CG5812-PA 861 GCR(ich)-RA 475..519 281..325 150 93.3 Plus
CG14254-PA 1083 CG14254-RA 471..510 280..319 150 95 Plus
CG8986-PA 597 CG8986-RA 293..326 282..315 145 97 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlE-RA 1346 CG14534-RA 140..733 17..610 2970 100 Plus
lectin-28C-RC 3044 CG7106-RC 1494..1853 610..251 1800 100 Minus
TwdlT-RA 1607 CG5812-RA 665..879 281..495 410 80.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7858570..7858929 610..251 1800 100 Minus
2L 23513712 2L 7860380..7860602 256..34 1115 100 Minus
3R 32079331 3R 27050062..27050276 281..495 370 78.1 Plus
2R 25286936 2R 11862730..11862834 475..371 180 78.1 Minus
Blast to na_te.dros performed on 2015-02-12 03:49:46 has no hits.

BS13283.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:20 Download gff for BS13283.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14534-PA 1..594 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:24 Download gff for BS13283.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 131..739 9..618 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:21 Download gff for BS13283.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 131..739 9..618 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:21 Download gff for BS13283.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7858564..7858924 256..618 98 <- Minus
2L 7860381..7860601 35..255 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:24 Download gff for BS13283.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7858564..7858924 256..618 98 <- Minus
arm_2L 7860381..7860601 35..255 100 <- Minus

BS13283.complete Sequence

626 bp assembled on 2006-11-01

GenBank Submission: FJ637416

> BS13283.complete
GAAGTTATCAGTCGACATGCATTCCAGTTGTGTGTTAGTGGTCCTCATGG
CCCTGGCTGCCCTGGTGGCCGCTCGTCCAGAGCCGCCTCGTGACTCGTAC
AGTGCGCCCCCCTCCAGCAGCTACCAGCCAAGTGGACCCAGCGGAGGCTA
CGGCGCCCCTGCGCCCCAGTACGGACCTCCCCAGCAGGCGCCGGTGATTC
ACAAGCACGTCTACGTCCATGTACCTCCACCAGAGCCGGAATACCAGGCA
CCCAGGAAACCCCTTTACGTGCCACCTCCGCAGAAGCACTACAAGATCGT
CTTCATCAAGGCGCCATCTCCACCAGTACCGACCGCCCCTGTAATACCGC
AGTTCCCACAGAACGAAGAGAAGACCCTGGTGTACGTGCTAGTCAAGAAG
CCGGAGGAGCAGCCGGAGATCATTATCCCAACGCCAGCTCCCACCCAACC
CAGCAAGCCGGAGGTGTACTTCATCCGCTACAAGACCCAGAAGGAGGAGA
CCGGACCCTATCCCAACAGTGTGGCGCCTCCAGCGCCCGAGTACGGAGCT
CCAGCTGCCCCGCCCGCACCCTCTGCTCCCAGCAGCTCGTATGGGGCACC
ATCCCACTAGAAGCTTTCTAGACCAT

BS13283.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlE-RA 594 CG14534-PA 1..594 17..610 2970 100 Plus
TwdlT-RA 861 CG5812-PA 475..689 281..495 370 78.1 Plus
TwdlBeta-RA 597 CG8986-PA 382..486 371..475 180 78.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlE-RA 1346 CG14534-RA 140..733 17..610 2970 100 Plus
lectin-28C-RC 3044 CG7106-RC 1494..1853 610..251 1800 100 Minus
TwdlT-RA 1607 CG5812-RA 665..879 281..495 370 78.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7858570..7858929 610..251 1800 100 Minus
2L 23513712 2L 7860380..7860602 256..34 1115 100 Minus
3R 32079331 3R 27050062..27050276 281..495 370 78.1 Plus
2R 25286936 2R 11862730..11862834 475..371 180 78.1 Minus
Blast to na_te.dros performed on 2014-11-26 14:55:32 has no hits.

BS13283.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:10 Download gff for BS13283.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 1..594 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:29 Download gff for BS13283.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 130..738 9..618 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:39 Download gff for BS13283.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 140..733 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:11 Download gff for BS13283.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 130..738 9..618 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:55 Download gff for BS13283.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 140..733 17..610 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:55 Download gff for BS13283.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7858570..7858924 256..610 100 <- Minus
2L 7860381..7860601 35..255 100 <- Minus
2L 7860683..7860700 17..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:39 Download gff for BS13283.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7858570..7858924 256..610 100 <- Minus
arm_2L 7860381..7860601 35..255 100 <- Minus
arm_2L 7860683..7860700 17..34 100   Minus

BS13283.pep Sequence

Translation from 16 to 609

> BS13283.pep
MHSSCVLVVLMALAALVAARPEPPRDSYSAPPSSSYQPSGPSGGYGAPAP
QYGPPQQAPVIHKHVYVHVPPPEPEYQAPRKPLYVPPPQKHYKIVFIKAP
SPPVPTAPVIPQFPQNEEKTLVYVLVKKPEEQPEIIIPTPAPTQPSKPEV
YFIRYKTQKEETGPYPNSVAPPAPEYGAPAAPPAPSAPSSSYGAPSH*

BS13283.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlE-PA 197 CG14534-PA 1..197 1..197 1071 100 Plus
TwdlBeta-PA 198 CG8986-PA 1..189 1..195 501 50.5 Plus
TwdlT-PA 286 CG5812-PA 113..233 40..163 403 63.7 Plus
TwdlC-PA 360 CG14254-PA 95..288 24..196 367 44.2 Plus
TwdlG-PC 278 CG14643-PC 82..214 33..160 280 48.5 Plus