Clone Sequence Records
BS13283.3prime Sequence
624 bp (583 high quality bases) assembled on 2006-10-13
> BS13283.3prime
ATGGTCTAGAAAGCTTCTAGTGGGATGGTGCCCCATACGAGCTGCTGGGA
GCAGAGGGTGCGGGCGGGGCAGCTGGAGCTCCGTACTCGGGCGCTGGAGG
CGCCACACTGTTGGGATAGGGTCCGGTCTCCTCCTTCTGGGTCTTGTAGC
GGATGAAGTACACCTCCGGCTTGCTGGGTTGGGTGGGAGCTGGCGTTGGG
ATAATGATCTCCGGCTGCTCCTCCGGCTTCTTGACTAGCACGTACACCAG
GGTCTTCTCTTCGTTCTGTGGGAACTGCGGTATTACAGGGGCGGTCGGTA
CTGGTGGAGATGGCGCCTTGATGAAGACGATCTTGTAGTGCTTCTGCGGA
GGTGGCACGTAAAGGGGTTTCCTGGGTGCCTGGTATTCCGGCTCTGGTGG
AGGTACATGGACGTAGACGTGCTTGTGAATCACCGGCGCCTGCTGGGGAG
GTCCGTACTGGGGCGCAGGGGCGCCGTAGCCTCCGCTGGGTCCACTTGGC
TGGTAGCTGCTGGAGGGGGGCGCACTGTACGAGTCACGAGGCGGCTCTGG
ACGAGCGGCCACCAGGGCAGCCAGGGCCATGAGGACCACTAACACACAAC
TGGAATGCATGTCGACTGATAACT
BS13283.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14534-PA | 594 | CG14534-RA | 1..594 | 610..17 | 2970 | 100 | Minus |
CG5812-PA | 861 | GCR(ich)-RA | 475..519 | 346..302 | 150 | 93.3 | Minus |
CG14254-PA | 1083 | CG14254-RA | 471..510 | 347..308 | 150 | 95 | Minus |
CG8986-PA | 597 | CG8986-RA | 293..326 | 345..312 | 145 | 97 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:22:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlE-RA | 1346 | CG14534-RA | 140..733 | 610..17 | 2970 | 100 | Minus |
lectin-28C-RC | 3044 | CG7106-RC | 1494..1853 | 17..376 | 1800 | 100 | Plus |
TwdlT-RA | 1607 | CG5812-RA | 665..879 | 346..132 | 410 | 80.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:22:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7858570..7858929 | 17..376 | 1800 | 100 | Plus |
2L | 23513712 | 2L | 7860380..7860602 | 371..593 | 1115 | 100 | Plus |
3R | 32079331 | 3R | 27050062..27050276 | 346..132 | 370 | 78.1 | Minus |
2R | 25286936 | 2R | 11862730..11862834 | 152..256 | 180 | 78.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:22:07 has no hits.
BS13283.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:20 Download gff for
BS13283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14534-PA | 1..594 | 17..610 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:41 Download gff for
BS13283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlE-RA | 131..739 | 9..618 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:47 Download gff for
BS13283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlE-RA | 131..739 | 9..618 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:47 Download gff for
BS13283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7860381..7860601 | 372..592 | 100 | <- | Plus |
2L | 7858564..7858924 | 9..371 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:41 Download gff for
BS13283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7858564..7858924 | 9..371 | 98 | <- | Plus |
arm_2L | 7860381..7860601 | 372..592 | 100 | <- | Plus |
BS13283.5prime Sequence
624 bp (618 high quality bases) assembled on 2006-10-13
> BS13283.5prime
GAAGTTATCAGTCGACATGCATTCCAGTTGTGTGTTAGTGGTCCTCATGG
CCCTGGCTGCCCTGGTGGCCGCTCGTCCAGAGCCGCCTCGTGACTCGTAC
AGTGCGCCCCCCTCCAGCAGCTACCAGCCAAGTGGACCCAGCGGAGGCTA
CGGCGCCCCTGCGCCCCAGTACGGACCTCCCCAGCAGGCGCCGGTGATTC
ACAAGCACGTCTACGTCCATGTACCTCCACCAGAGCCGGAATACCAGGCA
CCCAGGAAACCCCTTTACGTGCCACCTCCGCAGAAGCACTACAAGATCGT
CTTCATCAAGGCGCCATCTCCACCAGTACCGACCGCCCCTGTAATACCGC
AGTTCCCACAGAACGAAGAGAAGACCCTGGTGTACGTGCTAGTCAAGAAG
CCGGAGGAGCAGCCGGAGATCATTATCCCAACGCCAGCTCCCACCCAACC
CAGCAAGCCGGAGGTGTACTTCATCCGCTACAAGACCCAGAAGGAGGAGA
CCGGACCCTATCCCAACAGTGTGGCGCCTCCAGCGCCCGAGTACGGAGCT
CCAGCTGCCCCGCCCGCACCCTCTGCTCCCAGCAGCTCGTATGGGGCACC
ATCCCACTAGAAGCTTTCTAGACC
BS13283.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14534-PA | 594 | CG14534-RA | 1..594 | 17..610 | 2970 | 100 | Plus |
CG5812-PA | 861 | GCR(ich)-RA | 475..519 | 281..325 | 150 | 93.3 | Plus |
CG14254-PA | 1083 | CG14254-RA | 471..510 | 280..319 | 150 | 95 | Plus |
CG8986-PA | 597 | CG8986-RA | 293..326 | 282..315 | 145 | 97 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlE-RA | 1346 | CG14534-RA | 140..733 | 17..610 | 2970 | 100 | Plus |
lectin-28C-RC | 3044 | CG7106-RC | 1494..1853 | 610..251 | 1800 | 100 | Minus |
TwdlT-RA | 1607 | CG5812-RA | 665..879 | 281..495 | 410 | 80.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7858570..7858929 | 610..251 | 1800 | 100 | Minus |
2L | 23513712 | 2L | 7860380..7860602 | 256..34 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 27050062..27050276 | 281..495 | 370 | 78.1 | Plus |
2R | 25286936 | 2R | 11862730..11862834 | 475..371 | 180 | 78.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:49:46 has no hits.
BS13283.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:20 Download gff for
BS13283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14534-PA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:24 Download gff for
BS13283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlE-RA | 131..739 | 9..618 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:21 Download gff for
BS13283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlE-RA | 131..739 | 9..618 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:21 Download gff for
BS13283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7858564..7858924 | 256..618 | 98 | <- | Minus |
2L | 7860381..7860601 | 35..255 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:24 Download gff for
BS13283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7858564..7858924 | 256..618 | 98 | <- | Minus |
arm_2L | 7860381..7860601 | 35..255 | 100 | <- | Minus |
BS13283.complete Sequence
626 bp assembled on 2006-11-01
GenBank Submission: FJ637416
> BS13283.complete
GAAGTTATCAGTCGACATGCATTCCAGTTGTGTGTTAGTGGTCCTCATGG
CCCTGGCTGCCCTGGTGGCCGCTCGTCCAGAGCCGCCTCGTGACTCGTAC
AGTGCGCCCCCCTCCAGCAGCTACCAGCCAAGTGGACCCAGCGGAGGCTA
CGGCGCCCCTGCGCCCCAGTACGGACCTCCCCAGCAGGCGCCGGTGATTC
ACAAGCACGTCTACGTCCATGTACCTCCACCAGAGCCGGAATACCAGGCA
CCCAGGAAACCCCTTTACGTGCCACCTCCGCAGAAGCACTACAAGATCGT
CTTCATCAAGGCGCCATCTCCACCAGTACCGACCGCCCCTGTAATACCGC
AGTTCCCACAGAACGAAGAGAAGACCCTGGTGTACGTGCTAGTCAAGAAG
CCGGAGGAGCAGCCGGAGATCATTATCCCAACGCCAGCTCCCACCCAACC
CAGCAAGCCGGAGGTGTACTTCATCCGCTACAAGACCCAGAAGGAGGAGA
CCGGACCCTATCCCAACAGTGTGGCGCCTCCAGCGCCCGAGTACGGAGCT
CCAGCTGCCCCGCCCGCACCCTCTGCTCCCAGCAGCTCGTATGGGGCACC
ATCCCACTAGAAGCTTTCTAGACCAT
BS13283.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:55:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlE-RA | 594 | CG14534-PA | 1..594 | 17..610 | 2970 | 100 | Plus |
TwdlT-RA | 861 | CG5812-PA | 475..689 | 281..495 | 370 | 78.1 | Plus |
TwdlBeta-RA | 597 | CG8986-PA | 382..486 | 371..475 | 180 | 78.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlE-RA | 1346 | CG14534-RA | 140..733 | 17..610 | 2970 | 100 | Plus |
lectin-28C-RC | 3044 | CG7106-RC | 1494..1853 | 610..251 | 1800 | 100 | Minus |
TwdlT-RA | 1607 | CG5812-RA | 665..879 | 281..495 | 370 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:55:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7858570..7858929 | 610..251 | 1800 | 100 | Minus |
2L | 23513712 | 2L | 7860380..7860602 | 256..34 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 27050062..27050276 | 281..495 | 370 | 78.1 | Plus |
2R | 25286936 | 2R | 11862730..11862834 | 475..371 | 180 | 78.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:55:32 has no hits.
BS13283.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:10 Download gff for
BS13283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlE-RA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:29 Download gff for
BS13283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlE-RA | 130..738 | 9..618 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:39 Download gff for
BS13283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlE-RA | 140..733 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:11 Download gff for
BS13283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlE-RA | 130..738 | 9..618 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:55 Download gff for
BS13283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlE-RA | 140..733 | 17..610 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:55 Download gff for
BS13283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7858570..7858924 | 256..610 | 100 | <- | Minus |
2L | 7860381..7860601 | 35..255 | 100 | <- | Minus |
2L | 7860683..7860700 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:39 Download gff for
BS13283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7858570..7858924 | 256..610 | 100 | <- | Minus |
arm_2L | 7860381..7860601 | 35..255 | 100 | <- | Minus |
arm_2L | 7860683..7860700 | 17..34 | 100 | | Minus |
BS13283.pep Sequence
Translation from 16 to 609
> BS13283.pep
MHSSCVLVVLMALAALVAARPEPPRDSYSAPPSSSYQPSGPSGGYGAPAP
QYGPPQQAPVIHKHVYVHVPPPEPEYQAPRKPLYVPPPQKHYKIVFIKAP
SPPVPTAPVIPQFPQNEEKTLVYVLVKKPEEQPEIIIPTPAPTQPSKPEV
YFIRYKTQKEETGPYPNSVAPPAPEYGAPAAPPAPSAPSSSYGAPSH*
BS13283.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlE-PA | 197 | CG14534-PA | 1..197 | 1..197 | 1071 | 100 | Plus |
TwdlBeta-PA | 198 | CG8986-PA | 1..189 | 1..195 | 501 | 50.5 | Plus |
TwdlT-PA | 286 | CG5812-PA | 113..233 | 40..163 | 403 | 63.7 | Plus |
TwdlC-PA | 360 | CG14254-PA | 95..288 | 24..196 | 367 | 44.2 | Plus |
TwdlG-PC | 278 | CG14643-PC | 82..214 | 33..160 | 280 | 48.5 | Plus |