Clone BS13284 Report

Search the DGRC for BS13284

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:84
Vector:pDNR-Dual
Associated Gene/Transcriptpix-RA
Protein status:BS13284.pep: full length peptide match
Sequenced Size:1868

Clone Sequence Records

BS13284.complete Sequence

1868 bp assembled on 2009-12-07

GenBank Submission: KX804113

> BS13284.complete
GAAGTTATCAGTCGACATGTCGCGCAGAAAGGAGAACGAGGAGGTGGACA
AGCAGACGCGTATTGCCATCGTCAGCGATGACAAGTGCAAGCCCAAACGG
TGTCGGCAGGAGTGCAAGAAGACCTGCCCAGTGGTGCGCATGGGCAAGCT
CTGCATCGAGGTGACGCCCACGTCCAAGATAGCCTCGTTGTCCGAGGAGC
TGTGCATCGGTTGCGGTATTTGCGTCAAGAAATGCCCCTTCGAGGCCATC
ACAATCATCAACTTGCCCAGCAATCTGGAGAAGCACACAACGCATCGATA
CAGCAAGAACTCCTTCAAGCTGCATCGTCTGCCCATTCCGCGTCCCGGTG
AAGTGCTCGGTCTTGTGGGACAGAACGGTATTGGCAAGTCGACCGCTTTG
AAGATCCTCGCGGGGAAACAAAAGCCGAACCTGGGGAAGTACGCCAATCC
GCCCGACTGGACGGAGATCCTTAGCTACTTCCGCGGCTCCGAGCTGCAGA
ACTACTTCACCAAGATCTTGGAGGACAATCTGAAGGCGCTGGTCAAGCCG
CAGTATGTGGATCAGATCCCCAAGGCGGTGCGTGGCGCTGTGGGCGATCT
TCTGGATAAGAAGGACGAGAGGGAGCTGCAGACTAAGATTTGTGAAATGC
TGGATCTATCGCACATCCGTGATCGTGAGATCGCTCAGCTTTCTGGCGGA
GAACTGCAACGCTTTGCCATCGCCATGGTATGCATACAGAATGCAGACAT
CTTCATGTTCGACGAGCCGTCCTCGTATTTGGATGTTAAGCAGCGTCTGA
ACGCTGCCTTGACCATTCGATCACTCCTGCATCCCACCAAGTTTATTATT
GTGGTGGAGCACGATTTGTCTGTGCTGGATTACTTGTCTGACTTTATATG
CTGCCTTTACGGAGTTCCCGGCTGCTACGGTGTGGTTACTATGCCTTTCT
CTGTGCGCGAAGGCATCAACATTTTCCTCGATGGCTTTGTGCCCACCGAA
AACATGCGATTCCGCACTGAGTCACTTACTTTCAAAGTATCTGAGTCCGC
TACGGAGGAGGAGATCAAGCGCATGAACCACTACGTATATCCCGCCATGG
TCAAGACCCTGGGCAAGTTCGAGTTGACGGTGGAAAAGGGTCACTTCAGC
GACTCCGAGATCCTGGTGCTCCTGGGCGAGAACGGTACAGGAAAGACGAC
GTTCATTCGCATGCTGGCCGGTAACCTCCAACCCGATGGCGAGGTGGAAC
TGCCTATGCTGAATATTTCCTACAAGCCCCAGAAGATTTCCCCGAAATTC
CAAAATCATGTTCGCCATTTATTGCACGATAAGATTCGTGACGCCTACGT
GCATCCTCAGTTTATTGCCGATGTTATGAAACCCATGAAAATTGAGGAAA
TCATGGACCAGGAGGTGCAGAACCTTTCCGGTGGTGAGTTGCAGCGAGTC
GCCTTGGTCCTGTGTCTTGGCAAGCCAGCGGATGTCTACCTCATCGACGA
ACCCTCTGCCTACTTGGATTCAGAGCAGCGTCTGGTGGCCGCCAAGGTTA
TCAAACGTTACATTCTGCACGCCAAGAAAACTGGATTTGTGGTGGAGCAC
GATTTCATCATGGCCACCTACCTCGCCGACCGTGTCATCGTGATCGAGGG
TCAGCCTTCAGTGAAGACGACAGCCTTTTCGCCGCAGTCGCTGCTAAATG
GCATGAACCGCTTCCTCGAACTGCTTGGTATTACGTTCCGTCGCGATCCC
AACAACTTCAGACCCCGCATTAACAAAAACAATTCGGTCAAGGACACAGA
ACAGAAACGCTCCGGCCAGTTCTTCTTCTTGGAGGACGAAGCCTGCAACT
AAAAGCTTTCTAGACCAT

BS13284.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
pix-RB 1836 CG5651-PB 1..1836 17..1852 9180 100 Plus
pix-RA 1836 CG5651-PA 1..1836 17..1852 9180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
pix-RB 2184 CG5651-RB 71..1907 16..1852 9185 100 Plus
pix-RA 2223 CG5651-RA 110..1946 16..1852 9185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8972685..8973401 1557..841 3585 100 Minus
3L 28110227 3L 8973459..8974073 842..228 3075 100 Minus
3L 28110227 3L 8972333..8972628 1852..1557 1480 100 Minus
3L 28110227 3L 8974134..8974347 229..16 1070 100 Minus
Blast to na_te.dros performed 2014-11-28 02:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 781..867 307..219 115 61.8 Minus

BS13284.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:10 Download gff for BS13284.complete
Subject Subject Range Query Range Percent Splice Strand
pix-RB 72..1905 17..1850 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:08 Download gff for BS13284.complete
Subject Subject Range Query Range Percent Splice Strand
pix-RA 111..1944 17..1850 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:40 Download gff for BS13284.complete
Subject Subject Range Query Range Percent Splice Strand
pix-RB 72..1905 17..1850 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:50 Download gff for BS13284.complete
Subject Subject Range Query Range Percent Splice Strand
pix-RA 111..1944 17..1850 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:50 Download gff for BS13284.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8972335..8972627 1558..1850 100 <- Minus
3L 8972685..8973401 841..1557 100 <- Minus
3L 8973461..8974071 230..840 100 <- Minus
3L 8974134..8974346 17..229 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:08 Download gff for BS13284.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8965435..8965727 1558..1850 100 <- Minus
arm_3L 8965785..8966501 841..1557 100 <- Minus
arm_3L 8966561..8967171 230..840 100 <- Minus
arm_3L 8967234..8967446 17..229 100   Minus

BS13284.3prime Sequence

785 bp (691 high quality bases) assembled on 2006-10-13

> BS13284.3prime
ATGGTCTAGAAAGCTTTTAGTTGCAGGCTTCGTCCTCCAAGAAGAAGAAC
TGGCCGGAGCGTTTCTGTTCTGTGTCCTTGACCGAATTGTTTTTGTTAAT
GCGGGGTCTGAAGTTGTTGGGATCGCGACGGAACGTAATACCAAGCAGTT
CGAGGAAGCGGTTCATGCCATTTAGCAGCGACTGCGGCGAAAAGGCTGTC
GTCTTCACTGAAGGCTGACCCTCGATCACGATGACACGGTCGGCGAGGTA
GGTGGCCATGATGAAATCGTGCTCCACCACAAATCCAGTTTTCTTGGCGT
GCAGAATGTAACGTTTGATAACCTTGGCGGCCACCAGACGCTGCTCTGAA
TCCAAGTAGGCAGAGGGTTCGTCGATGAGGTAGACATCCGCTGGCTTGCC
AAGACACAGGACCAAGGCGACTCGCTGCAACTCACCACCGGAAAGGTTCT
GCACCTCCTGGTCCATGATTTCCTCAATTTTCATGGGTTTCATAACATCG
GCAATAAACTGAGGATGCACGTAGGCGTCACGAATCTTATCGTGCAATAA
ATGGCGAACATGATTTTGGAATTTCGGGGAAATCTTCTGGGGCTTGTAGG
AAATATTCAGCATAGGCAGTTCCACCTCGCCATCGGGTTGGAGGTTACCG
GCCAGCATGCGAATGAACGTCGTCTTTCCTGTACCGTTCTCGCCCAGGAG
CACCAGGATCTCGGAGTCGCTGAAGTGACCCTTTTCCACCGTCAACTCGA
ACTTGCCCAGGGTCTTGACCATGGCGGGATATACG

BS13284.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5651-PA 1836 CG5651-RA 1068..1836 785..17 3845 100 Minus
CG5651-PB 1836 CG5651-RB 1068..1836 785..17 3845 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
pix-RB 2184 CG5651-RB 1139..1907 785..17 3845 100 Minus
pix-RA 2223 CG5651-RA 1178..1946 785..17 3845 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8972685..8973158 312..785 2370 100 Plus
3L 28110227 3L 8972333..8972628 17..312 1480 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:57:52 has no hits.

BS13284.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:21 Download gff for BS13284.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5651-PB 1068..1836 17..785 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:47:43 Download gff for BS13284.3prime
Subject Subject Range Query Range Percent Splice Strand
pix-RA 1178..1946 17..785 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:26:27 Download gff for BS13284.3prime
Subject Subject Range Query Range Percent Splice Strand
pix-RA 1178..1946 17..785 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:26:27 Download gff for BS13284.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8972337..8972627 21..311 100 <- Plus
3L 8972685..8973158 312..785 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:47:43 Download gff for BS13284.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8965437..8965727 21..311 100 <- Plus
arm_3L 8965785..8966258 312..785 100   Plus

BS13284.5prime Sequence

807 bp (736 high quality bases) assembled on 2006-10-13

> BS13284.5prime
GAAGTTATCAGTCGACATGTCGCGCAGAAAGGAGAACGAGGAGGTGGACA
AGCAGACGCGTATTGCCATCGTCAGCGATGACAAGTGCAAGCCCAAACGG
TGTCGGCAGGAGTGCAAGAAGACCTGCCCAGTGGTGCGCATGGGCAAGCT
CTGCATCGAGGTGACGCCCACGTCCAAGATAGCCTCGTTGTCCGAGGAGC
TGTGCATCGGTTGCGGTATTTGCGTCAAGAAATGCCCCTTCGAGGCCATC
ACAATCATCAACTTGCCCAGCAATCTGGAGAAGCACACAACGCATCGATA
CAGCAAGAACTCCTTCAAGCTGCATCGTCTGCCCATTCCGCGTCCCGGTG
AAGTGCTCGGTCTTGTGGGACAGAACGGTATTGGCAAGTCGACCGCTTTG
AAGATCCTCGCGGGGAAACAAAAGCCGAACCTGGGGAAGTACGCCAATCC
GCCCGACTGGACGGAGATCCTTAGCTACTTCCGCGGCTCCGAGCTGCAGA
ACTACTTCACCAAGATCTTGGAGGACAATCTGAAGGCGCTGGTCAAGCCG
CAGTATGTGGATCAGATCCCCAAGGCGGTGCGTGGCGCTGTGGGCGATCT
TCTGGATAAGAAGGACGAGAGGGAGCTGCAGACTAAGATTTGTGAAATGC
TGGATCTATCGCACATCCGTGATCGTGAGATCGCTCAGCTTTCTGGCGGA
GAACTGCAACGCTTTGCCATCGCCATGGTATGCATACAGAATGCAGACAT
CTTCATGTTCGACGAGCCGTCCTCGTATTTGGATGTTAAGCAGCGTCTGA
ACGCTGC

BS13284.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5651-PA 1836 CG5651-RA 1..791 17..807 3955 100 Plus
CG5651-PB 1836 CG5651-RB 1..791 17..807 3955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
pix-RB 2184 CG5651-RB 71..862 16..807 3960 100 Plus
pix-RA 2223 CG5651-RA 110..901 16..807 3960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8973494..8974073 807..228 2900 100 Minus
3L 28110227 3L 8974134..8974347 229..16 1070 100 Minus
Blast to na_te.dros performed 2015-02-13 07:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 781..867 307..219 115 61.8 Minus

BS13284.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:21 Download gff for BS13284.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5651-PB 1..791 17..807 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:40:56 Download gff for BS13284.5prime
Subject Subject Range Query Range Percent Splice Strand
pix-RA 110..901 16..807 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:24:15 Download gff for BS13284.5prime
Subject Subject Range Query Range Percent Splice Strand
pix-RA 110..901 16..807 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:24:15 Download gff for BS13284.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8973494..8974071 230..807 100 <- Minus
3L 8974134..8974356 6..229 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:40:56 Download gff for BS13284.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8966594..8967171 230..807 100 <- Minus
arm_3L 8967234..8967456 6..229 98   Minus

BS13284.pep Sequence

Translation from 16 to 1851

> BS13284.pep
MSRRKENEEVDKQTRIAIVSDDKCKPKRCRQECKKTCPVVRMGKLCIEVT
PTSKIASLSEELCIGCGICVKKCPFEAITIINLPSNLEKHTTHRYSKNSF
KLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGKYANPPDWTE
ILSYFRGSELQNYFTKILEDNLKALVKPQYVDQIPKAVRGAVGDLLDKKD
ERELQTKICEMLDLSHIRDREIAQLSGGELQRFAIAMVCIQNADIFMFDE
PSSYLDVKQRLNAALTIRSLLHPTKFIIVVEHDLSVLDYLSDFICCLYGV
PGCYGVVTMPFSVREGINIFLDGFVPTENMRFRTESLTFKVSESATEEEI
KRMNHYVYPAMVKTLGKFELTVEKGHFSDSEILVLLGENGTGKTTFIRML
AGNLQPDGEVELPMLNISYKPQKISPKFQNHVRHLLHDKIRDAYVHPQFI
ADVMKPMKIEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYL
DSEQRLVAAKVIKRYILHAKKTGFVVEHDFIMATYLADRVIVIEGQPSVK
TTAFSPQSLLNGMNRFLELLGITFRRDPNNFRPRINKNNSVKDTEQKRSG
QFFFLEDEACN*

BS13284.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
pix-PB 611 CG5651-PB 1..611 1..611 3172 100 Plus
pix-PA 611 CG5651-PA 1..611 1..611 3172 100 Plus
CG34120-PD 1981 CG34120-PD 1641..1839 370..559 175 28.6 Plus
CG34120-PC 1997 CG34120-PC 1657..1855 370..559 175 28.6 Plus
CG34120-PE 1998 CG34120-PE 1658..1856 370..559 175 28.6 Plus