Clone Sequence Records
BS13284.complete Sequence
1868 bp assembled on 2009-12-07
GenBank Submission: KX804113
> BS13284.complete
GAAGTTATCAGTCGACATGTCGCGCAGAAAGGAGAACGAGGAGGTGGACA
AGCAGACGCGTATTGCCATCGTCAGCGATGACAAGTGCAAGCCCAAACGG
TGTCGGCAGGAGTGCAAGAAGACCTGCCCAGTGGTGCGCATGGGCAAGCT
CTGCATCGAGGTGACGCCCACGTCCAAGATAGCCTCGTTGTCCGAGGAGC
TGTGCATCGGTTGCGGTATTTGCGTCAAGAAATGCCCCTTCGAGGCCATC
ACAATCATCAACTTGCCCAGCAATCTGGAGAAGCACACAACGCATCGATA
CAGCAAGAACTCCTTCAAGCTGCATCGTCTGCCCATTCCGCGTCCCGGTG
AAGTGCTCGGTCTTGTGGGACAGAACGGTATTGGCAAGTCGACCGCTTTG
AAGATCCTCGCGGGGAAACAAAAGCCGAACCTGGGGAAGTACGCCAATCC
GCCCGACTGGACGGAGATCCTTAGCTACTTCCGCGGCTCCGAGCTGCAGA
ACTACTTCACCAAGATCTTGGAGGACAATCTGAAGGCGCTGGTCAAGCCG
CAGTATGTGGATCAGATCCCCAAGGCGGTGCGTGGCGCTGTGGGCGATCT
TCTGGATAAGAAGGACGAGAGGGAGCTGCAGACTAAGATTTGTGAAATGC
TGGATCTATCGCACATCCGTGATCGTGAGATCGCTCAGCTTTCTGGCGGA
GAACTGCAACGCTTTGCCATCGCCATGGTATGCATACAGAATGCAGACAT
CTTCATGTTCGACGAGCCGTCCTCGTATTTGGATGTTAAGCAGCGTCTGA
ACGCTGCCTTGACCATTCGATCACTCCTGCATCCCACCAAGTTTATTATT
GTGGTGGAGCACGATTTGTCTGTGCTGGATTACTTGTCTGACTTTATATG
CTGCCTTTACGGAGTTCCCGGCTGCTACGGTGTGGTTACTATGCCTTTCT
CTGTGCGCGAAGGCATCAACATTTTCCTCGATGGCTTTGTGCCCACCGAA
AACATGCGATTCCGCACTGAGTCACTTACTTTCAAAGTATCTGAGTCCGC
TACGGAGGAGGAGATCAAGCGCATGAACCACTACGTATATCCCGCCATGG
TCAAGACCCTGGGCAAGTTCGAGTTGACGGTGGAAAAGGGTCACTTCAGC
GACTCCGAGATCCTGGTGCTCCTGGGCGAGAACGGTACAGGAAAGACGAC
GTTCATTCGCATGCTGGCCGGTAACCTCCAACCCGATGGCGAGGTGGAAC
TGCCTATGCTGAATATTTCCTACAAGCCCCAGAAGATTTCCCCGAAATTC
CAAAATCATGTTCGCCATTTATTGCACGATAAGATTCGTGACGCCTACGT
GCATCCTCAGTTTATTGCCGATGTTATGAAACCCATGAAAATTGAGGAAA
TCATGGACCAGGAGGTGCAGAACCTTTCCGGTGGTGAGTTGCAGCGAGTC
GCCTTGGTCCTGTGTCTTGGCAAGCCAGCGGATGTCTACCTCATCGACGA
ACCCTCTGCCTACTTGGATTCAGAGCAGCGTCTGGTGGCCGCCAAGGTTA
TCAAACGTTACATTCTGCACGCCAAGAAAACTGGATTTGTGGTGGAGCAC
GATTTCATCATGGCCACCTACCTCGCCGACCGTGTCATCGTGATCGAGGG
TCAGCCTTCAGTGAAGACGACAGCCTTTTCGCCGCAGTCGCTGCTAAATG
GCATGAACCGCTTCCTCGAACTGCTTGGTATTACGTTCCGTCGCGATCCC
AACAACTTCAGACCCCGCATTAACAAAAACAATTCGGTCAAGGACACAGA
ACAGAAACGCTCCGGCCAGTTCTTCTTCTTGGAGGACGAAGCCTGCAACT
AAAAGCTTTCTAGACCAT
BS13284.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:13:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pix-RB | 1836 | CG5651-PB | 1..1836 | 17..1852 | 9180 | 100 | Plus |
pix-RA | 1836 | CG5651-PA | 1..1836 | 17..1852 | 9180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pix-RB | 2184 | CG5651-RB | 71..1907 | 16..1852 | 9185 | 100 | Plus |
pix-RA | 2223 | CG5651-RA | 110..1946 | 16..1852 | 9185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8972685..8973401 | 1557..841 | 3585 | 100 | Minus |
3L | 28110227 | 3L | 8973459..8974073 | 842..228 | 3075 | 100 | Minus |
3L | 28110227 | 3L | 8972333..8972628 | 1852..1557 | 1480 | 100 | Minus |
3L | 28110227 | 3L | 8974134..8974347 | 229..16 | 1070 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:13:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\INE-1 | 1467 | Dbuz\INE-1 ISBU1 1467bp | 781..867 | 307..219 | 115 | 61.8 | Minus |
BS13284.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:10 Download gff for
BS13284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pix-RB | 72..1905 | 17..1850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:08 Download gff for
BS13284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pix-RA | 111..1944 | 17..1850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:40 Download gff for
BS13284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pix-RB | 72..1905 | 17..1850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:50 Download gff for
BS13284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pix-RA | 111..1944 | 17..1850 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:50 Download gff for
BS13284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8972335..8972627 | 1558..1850 | 100 | <- | Minus |
3L | 8972685..8973401 | 841..1557 | 100 | <- | Minus |
3L | 8973461..8974071 | 230..840 | 100 | <- | Minus |
3L | 8974134..8974346 | 17..229 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:08 Download gff for
BS13284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8965435..8965727 | 1558..1850 | 100 | <- | Minus |
arm_3L | 8965785..8966501 | 841..1557 | 100 | <- | Minus |
arm_3L | 8966561..8967171 | 230..840 | 100 | <- | Minus |
arm_3L | 8967234..8967446 | 17..229 | 100 | | Minus |
BS13284.3prime Sequence
785 bp (691 high quality bases) assembled on 2006-10-13
> BS13284.3prime
ATGGTCTAGAAAGCTTTTAGTTGCAGGCTTCGTCCTCCAAGAAGAAGAAC
TGGCCGGAGCGTTTCTGTTCTGTGTCCTTGACCGAATTGTTTTTGTTAAT
GCGGGGTCTGAAGTTGTTGGGATCGCGACGGAACGTAATACCAAGCAGTT
CGAGGAAGCGGTTCATGCCATTTAGCAGCGACTGCGGCGAAAAGGCTGTC
GTCTTCACTGAAGGCTGACCCTCGATCACGATGACACGGTCGGCGAGGTA
GGTGGCCATGATGAAATCGTGCTCCACCACAAATCCAGTTTTCTTGGCGT
GCAGAATGTAACGTTTGATAACCTTGGCGGCCACCAGACGCTGCTCTGAA
TCCAAGTAGGCAGAGGGTTCGTCGATGAGGTAGACATCCGCTGGCTTGCC
AAGACACAGGACCAAGGCGACTCGCTGCAACTCACCACCGGAAAGGTTCT
GCACCTCCTGGTCCATGATTTCCTCAATTTTCATGGGTTTCATAACATCG
GCAATAAACTGAGGATGCACGTAGGCGTCACGAATCTTATCGTGCAATAA
ATGGCGAACATGATTTTGGAATTTCGGGGAAATCTTCTGGGGCTTGTAGG
AAATATTCAGCATAGGCAGTTCCACCTCGCCATCGGGTTGGAGGTTACCG
GCCAGCATGCGAATGAACGTCGTCTTTCCTGTACCGTTCTCGCCCAGGAG
CACCAGGATCTCGGAGTCGCTGAAGTGACCCTTTTCCACCGTCAACTCGA
ACTTGCCCAGGGTCTTGACCATGGCGGGATATACG
BS13284.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:50:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5651-PA | 1836 | CG5651-RA | 1068..1836 | 785..17 | 3845 | 100 | Minus |
CG5651-PB | 1836 | CG5651-RB | 1068..1836 | 785..17 | 3845 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:57:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pix-RB | 2184 | CG5651-RB | 1139..1907 | 785..17 | 3845 | 100 | Minus |
pix-RA | 2223 | CG5651-RA | 1178..1946 | 785..17 | 3845 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:57:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8972685..8973158 | 312..785 | 2370 | 100 | Plus |
3L | 28110227 | 3L | 8972333..8972628 | 17..312 | 1480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:57:52 has no hits.
BS13284.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:21 Download gff for
BS13284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5651-PB | 1068..1836 | 17..785 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:47:43 Download gff for
BS13284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pix-RA | 1178..1946 | 17..785 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:26:27 Download gff for
BS13284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pix-RA | 1178..1946 | 17..785 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:26:27 Download gff for
BS13284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8972337..8972627 | 21..311 | 100 | <- | Plus |
3L | 8972685..8973158 | 312..785 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:47:43 Download gff for
BS13284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8965437..8965727 | 21..311 | 100 | <- | Plus |
arm_3L | 8965785..8966258 | 312..785 | 100 | | Plus |
BS13284.5prime Sequence
807 bp (736 high quality bases) assembled on 2006-10-13
> BS13284.5prime
GAAGTTATCAGTCGACATGTCGCGCAGAAAGGAGAACGAGGAGGTGGACA
AGCAGACGCGTATTGCCATCGTCAGCGATGACAAGTGCAAGCCCAAACGG
TGTCGGCAGGAGTGCAAGAAGACCTGCCCAGTGGTGCGCATGGGCAAGCT
CTGCATCGAGGTGACGCCCACGTCCAAGATAGCCTCGTTGTCCGAGGAGC
TGTGCATCGGTTGCGGTATTTGCGTCAAGAAATGCCCCTTCGAGGCCATC
ACAATCATCAACTTGCCCAGCAATCTGGAGAAGCACACAACGCATCGATA
CAGCAAGAACTCCTTCAAGCTGCATCGTCTGCCCATTCCGCGTCCCGGTG
AAGTGCTCGGTCTTGTGGGACAGAACGGTATTGGCAAGTCGACCGCTTTG
AAGATCCTCGCGGGGAAACAAAAGCCGAACCTGGGGAAGTACGCCAATCC
GCCCGACTGGACGGAGATCCTTAGCTACTTCCGCGGCTCCGAGCTGCAGA
ACTACTTCACCAAGATCTTGGAGGACAATCTGAAGGCGCTGGTCAAGCCG
CAGTATGTGGATCAGATCCCCAAGGCGGTGCGTGGCGCTGTGGGCGATCT
TCTGGATAAGAAGGACGAGAGGGAGCTGCAGACTAAGATTTGTGAAATGC
TGGATCTATCGCACATCCGTGATCGTGAGATCGCTCAGCTTTCTGGCGGA
GAACTGCAACGCTTTGCCATCGCCATGGTATGCATACAGAATGCAGACAT
CTTCATGTTCGACGAGCCGTCCTCGTATTTGGATGTTAAGCAGCGTCTGA
ACGCTGC
BS13284.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:51:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5651-PA | 1836 | CG5651-RA | 1..791 | 17..807 | 3955 | 100 | Plus |
CG5651-PB | 1836 | CG5651-RB | 1..791 | 17..807 | 3955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:06:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pix-RB | 2184 | CG5651-RB | 71..862 | 16..807 | 3960 | 100 | Plus |
pix-RA | 2223 | CG5651-RA | 110..901 | 16..807 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8973494..8974073 | 807..228 | 2900 | 100 | Minus |
3L | 28110227 | 3L | 8974134..8974347 | 229..16 | 1070 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 07:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\INE-1 | 1467 | Dbuz\INE-1 ISBU1 1467bp | 781..867 | 307..219 | 115 | 61.8 | Minus |
BS13284.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:21 Download gff for
BS13284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5651-PB | 1..791 | 17..807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:40:56 Download gff for
BS13284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pix-RA | 110..901 | 16..807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:24:15 Download gff for
BS13284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pix-RA | 110..901 | 16..807 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:24:15 Download gff for
BS13284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8973494..8974071 | 230..807 | 100 | <- | Minus |
3L | 8974134..8974356 | 6..229 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:40:56 Download gff for
BS13284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8966594..8967171 | 230..807 | 100 | <- | Minus |
arm_3L | 8967234..8967456 | 6..229 | 98 | | Minus |
BS13284.pep Sequence
Translation from 16 to 1851
> BS13284.pep
MSRRKENEEVDKQTRIAIVSDDKCKPKRCRQECKKTCPVVRMGKLCIEVT
PTSKIASLSEELCIGCGICVKKCPFEAITIINLPSNLEKHTTHRYSKNSF
KLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGKYANPPDWTE
ILSYFRGSELQNYFTKILEDNLKALVKPQYVDQIPKAVRGAVGDLLDKKD
ERELQTKICEMLDLSHIRDREIAQLSGGELQRFAIAMVCIQNADIFMFDE
PSSYLDVKQRLNAALTIRSLLHPTKFIIVVEHDLSVLDYLSDFICCLYGV
PGCYGVVTMPFSVREGINIFLDGFVPTENMRFRTESLTFKVSESATEEEI
KRMNHYVYPAMVKTLGKFELTVEKGHFSDSEILVLLGENGTGKTTFIRML
AGNLQPDGEVELPMLNISYKPQKISPKFQNHVRHLLHDKIRDAYVHPQFI
ADVMKPMKIEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYL
DSEQRLVAAKVIKRYILHAKKTGFVVEHDFIMATYLADRVIVIEGQPSVK
TTAFSPQSLLNGMNRFLELLGITFRRDPNNFRPRINKNNSVKDTEQKRSG
QFFFLEDEACN*
BS13284.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:45:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pix-PB | 611 | CG5651-PB | 1..611 | 1..611 | 3172 | 100 | Plus |
pix-PA | 611 | CG5651-PA | 1..611 | 1..611 | 3172 | 100 | Plus |
CG34120-PD | 1981 | CG34120-PD | 1641..1839 | 370..559 | 175 | 28.6 | Plus |
CG34120-PC | 1997 | CG34120-PC | 1657..1855 | 370..559 | 175 | 28.6 | Plus |
CG34120-PE | 1998 | CG34120-PE | 1658..1856 | 370..559 | 175 | 28.6 | Plus |