Clone Sequence Records
BS13286.3prime Sequence
405 bp (405 high quality bases) assembled on 2006-10-13
> BS13286.3prime
ATGGTCTAGAAAGCTTCTATAGGTACGGCCGGTCCATCGGCGTTTGCTTG
GCCTTCCTGTCGCGGGCGCGTGGAAACCAGCGGTGTTTAGTCGTGTGGGT
CAGCTGCATCAGCTCCTGGCGAGCCACTTCTGGATGTTTGCTTTTAAAGG
CACGCATCGCCGTCTTCAGAGCCGATTCCTTAACCACCGCCGAGCTCTGA
ATCTCGCTGATCTCTGGCAGCGGCAGGGTGTTCTCGTAGGGAACTGGTGT
GTCCGGATGCCAGGCCACAATGGTGCGACCATTTTTGGTCACTGCCACGG
CCTCCACCAGGCTCTTGCCACCGACGGCATTGCGCTGCACGGCACTCGAG
GAAAATAAACGAAATCCTCCGTATAAACGTGCCGCTGACATGTCGACTGA
TAACT
BS13286.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12921-PA | 375 | mRpL42-RA | 1..375 | 391..17 | 1875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL42-RB | 460 | CG12921-RB | 32..406 | 391..17 | 1875 | 100 | Minus |
mRpL42-RA | 593 | CG12921-RA | 165..539 | 391..17 | 1875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:32:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10066814..10067188 | 391..17 | 1875 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:32:11 has no hits.
BS13286.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:22 Download gff for
BS13286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12921-PA | 1..375 | 17..391 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:30 Download gff for
BS13286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL42-RA | 159..544 | 9..397 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:42 Download gff for
BS13286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL42-RA | 159..544 | 9..397 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:42 Download gff for
BS13286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10066814..10067193 | 9..391 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:30 Download gff for
BS13286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5954319..5954698 | 9..391 | 98 | | Minus |
BS13286.5prime Sequence
405 bp (405 high quality bases) assembled on 2006-10-13
> BS13286.5prime
GAAGTTATCAGTCGACATGTCAGCGGCACGTTTATACGGAGGATTTCGTT
TATTTTCCTCGAGTGCCGTGCAGCGCAATGCCGTCGGTGGCAAGAGCCTG
GTGGAGGCCGTGGCAGTGACCAAAAATGGTCGCACCATTGTGGCCTGGCA
TCCGGACACACCAGTTCCCTACGAGAACACCCTGCCGCTGCCAGAGATCA
GCGAGATTCAGAGCTCGGCGGTGGTTAAGGAATCGGCTCTGAAGACGGCG
ATGCGTGCCTTTAAAAGCAAACATCCAGAAGTGGCTCGCCAGGAGCTGAT
GCAGCTGACCCACACGACTAAACACCGCTGGTTTCCACGCGCCCGCGACA
GGAAGGCCAAGCAAACGCCGATGGACCGGCCGTACCTATAGAAGCTTTCT
AGACC
BS13286.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12921-PA | 375 | mRpL42-RA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL42-RB | 460 | CG12921-RB | 32..406 | 17..391 | 1875 | 100 | Plus |
mRpL42-RA | 593 | CG12921-RA | 165..539 | 17..391 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10066814..10067188 | 17..391 | 1875 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:02:58 has no hits.
BS13286.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:22 Download gff for
BS13286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12921-PA | 1..375 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:21 Download gff for
BS13286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL42-RA | 159..544 | 11..399 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:52 Download gff for
BS13286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL42-RA | 159..544 | 11..399 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:52 Download gff for
BS13286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10066814..10067193 | 17..399 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:21 Download gff for
BS13286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5954319..5954698 | 17..399 | 98 | | Plus |
BS13286.complete Sequence
407 bp assembled on 2006-11-01
GenBank Submission: FJ637417
> BS13286.complete
GAAGTTATCAGTCGACATGTCAGCGGCACGTTTATACGGAGGATTTCGTT
TATTTTCCTCGAGTGCCGTGCAGCGCAATGCCGTCGGTGGCAAGAGCCTG
GTGGAGGCCGTGGCAGTGACCAAAAATGGTCGCACCATTGTGGCCTGGCA
TCCGGACACACCAGTTCCCTACGAGAACACCCTGCCGCTGCCAGAGATCA
GCGAGATTCAGAGCTCGGCGGTGGTTAAGGAATCGGCTCTGAAGACGGCG
ATGCGTGCCTTTAAAAGCAAACATCCAGAAGTGGCTCGCCAGGAGCTGAT
GCAGCTGACCCACACGACTAAACACCGCTGGTTTCCACGCGCCCGCGACA
GGAAGGCCAAGCAAACGCCGATGGACCGGCCGTACCTATAGAAGCTTTCT
AGACCAT
BS13286.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL42-RB | 375 | CG12921-PB | 1..375 | 17..391 | 1875 | 100 | Plus |
mRpL42-RA | 375 | CG12921-PA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL42-RB | 460 | CG12921-RB | 32..406 | 17..391 | 1875 | 100 | Plus |
mRpL42-RA | 593 | CG12921-RA | 165..539 | 17..391 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:53:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10066814..10067188 | 17..391 | 1875 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:53:46 has no hits.
BS13286.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:28 Download gff for
BS13286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL42-RA | 1..375 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:49 Download gff for
BS13286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL42-RA | 160..545 | 11..399 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:48 Download gff for
BS13286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL42-RA | 165..539 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:28 Download gff for
BS13286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL42-RA | 160..545 | 11..399 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:39 Download gff for
BS13286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL42-RA | 165..539 | 17..391 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:39 Download gff for
BS13286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10066814..10067188 | 17..391 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:48 Download gff for
BS13286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5954319..5954693 | 17..391 | 100 | | Plus |
BS13286.pep Sequence
Translation from 16 to 390
> BS13286.pep
MSAARLYGGFRLFSSSAVQRNAVGGKSLVEAVAVTKNGRTIVAWHPDTPV
PYENTLPLPEISEIQSSAVVKESALKTAMRAFKSKHPEVARQELMQLTHT
TKHRWFPRARDRKAKQTPMDRPYL*
BS13286.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL42-PB | 124 | CG12921-PB | 1..124 | 1..124 | 637 | 100 | Plus |
mRpL42-PA | 124 | CG12921-PA | 1..124 | 1..124 | 637 | 100 | Plus |