Clone BS13286 Report

Search the DGRC for BS13286

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL42-RA
Protein status:BS13286.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13286.3prime Sequence

405 bp (405 high quality bases) assembled on 2006-10-13

> BS13286.3prime
ATGGTCTAGAAAGCTTCTATAGGTACGGCCGGTCCATCGGCGTTTGCTTG
GCCTTCCTGTCGCGGGCGCGTGGAAACCAGCGGTGTTTAGTCGTGTGGGT
CAGCTGCATCAGCTCCTGGCGAGCCACTTCTGGATGTTTGCTTTTAAAGG
CACGCATCGCCGTCTTCAGAGCCGATTCCTTAACCACCGCCGAGCTCTGA
ATCTCGCTGATCTCTGGCAGCGGCAGGGTGTTCTCGTAGGGAACTGGTGT
GTCCGGATGCCAGGCCACAATGGTGCGACCATTTTTGGTCACTGCCACGG
CCTCCACCAGGCTCTTGCCACCGACGGCATTGCGCTGCACGGCACTCGAG
GAAAATAAACGAAATCCTCCGTATAAACGTGCCGCTGACATGTCGACTGA
TAACT

BS13286.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12921-PA 375 mRpL42-RA 1..375 391..17 1875 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL42-RB 460 CG12921-RB 32..406 391..17 1875 100 Minus
mRpL42-RA 593 CG12921-RA 165..539 391..17 1875 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10066814..10067188 391..17 1875 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:32:11 has no hits.

BS13286.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:22 Download gff for BS13286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12921-PA 1..375 17..391 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:30 Download gff for BS13286.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL42-RA 159..544 9..397 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:42 Download gff for BS13286.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL42-RA 159..544 9..397 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:42 Download gff for BS13286.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10066814..10067193 9..391 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:30 Download gff for BS13286.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5954319..5954698 9..391 98   Minus

BS13286.5prime Sequence

405 bp (405 high quality bases) assembled on 2006-10-13

> BS13286.5prime
GAAGTTATCAGTCGACATGTCAGCGGCACGTTTATACGGAGGATTTCGTT
TATTTTCCTCGAGTGCCGTGCAGCGCAATGCCGTCGGTGGCAAGAGCCTG
GTGGAGGCCGTGGCAGTGACCAAAAATGGTCGCACCATTGTGGCCTGGCA
TCCGGACACACCAGTTCCCTACGAGAACACCCTGCCGCTGCCAGAGATCA
GCGAGATTCAGAGCTCGGCGGTGGTTAAGGAATCGGCTCTGAAGACGGCG
ATGCGTGCCTTTAAAAGCAAACATCCAGAAGTGGCTCGCCAGGAGCTGAT
GCAGCTGACCCACACGACTAAACACCGCTGGTTTCCACGCGCCCGCGACA
GGAAGGCCAAGCAAACGCCGATGGACCGGCCGTACCTATAGAAGCTTTCT
AGACC

BS13286.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12921-PA 375 mRpL42-RA 1..375 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL42-RB 460 CG12921-RB 32..406 17..391 1875 100 Plus
mRpL42-RA 593 CG12921-RA 165..539 17..391 1875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10066814..10067188 17..391 1875 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:02:58 has no hits.

BS13286.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:22 Download gff for BS13286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12921-PA 1..375 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:21 Download gff for BS13286.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL42-RA 159..544 11..399 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:52 Download gff for BS13286.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL42-RA 159..544 11..399 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:52 Download gff for BS13286.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10066814..10067193 17..399 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:21 Download gff for BS13286.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5954319..5954698 17..399 98   Plus

BS13286.complete Sequence

407 bp assembled on 2006-11-01

GenBank Submission: FJ637417

> BS13286.complete
GAAGTTATCAGTCGACATGTCAGCGGCACGTTTATACGGAGGATTTCGTT
TATTTTCCTCGAGTGCCGTGCAGCGCAATGCCGTCGGTGGCAAGAGCCTG
GTGGAGGCCGTGGCAGTGACCAAAAATGGTCGCACCATTGTGGCCTGGCA
TCCGGACACACCAGTTCCCTACGAGAACACCCTGCCGCTGCCAGAGATCA
GCGAGATTCAGAGCTCGGCGGTGGTTAAGGAATCGGCTCTGAAGACGGCG
ATGCGTGCCTTTAAAAGCAAACATCCAGAAGTGGCTCGCCAGGAGCTGAT
GCAGCTGACCCACACGACTAAACACCGCTGGTTTCCACGCGCCCGCGACA
GGAAGGCCAAGCAAACGCCGATGGACCGGCCGTACCTATAGAAGCTTTCT
AGACCAT

BS13286.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL42-RB 375 CG12921-PB 1..375 17..391 1875 100 Plus
mRpL42-RA 375 CG12921-PA 1..375 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL42-RB 460 CG12921-RB 32..406 17..391 1875 100 Plus
mRpL42-RA 593 CG12921-RA 165..539 17..391 1875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10066814..10067188 17..391 1875 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:53:46 has no hits.

BS13286.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:28 Download gff for BS13286.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL42-RA 1..375 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:49 Download gff for BS13286.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL42-RA 160..545 11..399 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:48 Download gff for BS13286.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL42-RA 165..539 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:28 Download gff for BS13286.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL42-RA 160..545 11..399 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:39 Download gff for BS13286.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL42-RA 165..539 17..391 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:39 Download gff for BS13286.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10066814..10067188 17..391 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:48 Download gff for BS13286.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5954319..5954693 17..391 100   Plus

BS13286.pep Sequence

Translation from 16 to 390

> BS13286.pep
MSAARLYGGFRLFSSSAVQRNAVGGKSLVEAVAVTKNGRTIVAWHPDTPV
PYENTLPLPEISEIQSSAVVKESALKTAMRAFKSKHPEVARQELMQLTHT
TKHRWFPRARDRKAKQTPMDRPYL*

BS13286.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL42-PB 124 CG12921-PB 1..124 1..124 637 100 Plus
mRpL42-PA 124 CG12921-PA 1..124 1..124 637 100 Plus