Clone Sequence Records
BS13287.3prime Sequence
771 bp (757 high quality bases) assembled on 2006-10-13
> BS13287.3prime
ATGGTCTAGAAAGCTTCTAAAAGACTTCCAGCTGCTCAATGGGCAGCCAC
TTAGAGCTCTCCAGAGCATCGTACAGACGGCGGTCGGCATCAATGGCCTC
TCGGTTCAGTTTGTCCACATCCAGGACGAACTTGTGCTCCACCAGTCCGT
TCTCATCCTCAGCTCCATTGGCGGCGGAAGCGGTCTGCTGCTGCTGCTGC
TGCTCGTACTGGGCGCTGCGTTGTGCGCTCCAGGCCTCGGCGTGCTGGGC
CAGAGTCTGCGGATTAGAGTGCGACTGCGACATGGCCTGCTGGTAGTATG
CAGCCGCATCTGTGATCGAAGCACCGGCCTGCTCGTAGTAACCTTGCCAG
GCCTGGTATCCCTGCCAATAGGTGCTGGTGGGGTCGTAGTACTGCGAGTA
GTCGGTGCCACCTGCTGCAGTCATACCGCTTCCATATCCATAGTTTGTGT
TGCCTTCGCCCACAGCACCACCCAACTCGGATTTGGGTTTGGGCACGGCA
TTGCAAATCTTTATGGGCTTGGTACCCAATCCGATGTACCCGTTCATGTC
GTACAGCGCTGATTTCTGCTCATCCTCGATGCCAAATCGCACAAAGCCGT
AACCCTTGGAAAACCCCAGGCTGTCCAAGATCACCTTGGCGGTTTTGATC
GATGTGAACTTGCTGGAGAACACCTTGTACAGCTGATAGTCGTCCACGTC
CGAGCTGAGGTCGCCCACCCAGACGCTAAATTCGCGTTCATTCCCGGGCA
GCTTGTACGAGTTGCTGGCCG
BS13287.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15440-PA | 1011 | CG15440-RA | 257..1011 | 771..17 | 3775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15440-RA | 1224 | CG15440-RA | 348..1102 | 771..17 | 3775 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4453291..4454045 | 17..771 | 3775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:32:22 has no hits.
BS13287.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:23 Download gff for
BS13287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-PA | 257..1011 | 17..771 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:33 Download gff for
BS13287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-RA | 348..1114 | 7..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:43 Download gff for
BS13287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-RA | 348..1114 | 7..771 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:43 Download gff for
BS13287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4453279..4454045 | 7..771 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:33 Download gff for
BS13287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4453279..4454045 | 7..771 | 99 | | Plus |
BS13287.5prime Sequence
744 bp (707 high quality bases) assembled on 2006-10-13
> BS13287.5prime
GAAGTTATCAGTCGACATGGCGTCCGTGCATTGTCAACTGTGGATGGGAA
GCCTGGAGTCCTACATGACGGAGAACTTCATAATCGCCGCTTTCCGGAAG
ATGGGCGAAGATCCCACCACGGTGCGCCTGATGCGCAACAAGTACACGGG
CGAACCAGCCGGCTACTGCTTCGTCAACTTCATATCCGATGACCATGCGC
TGGACGCGATGCACAAGCTAAACGGTAAGCCCATTCCGGGCACCAATCCC
ATTGTGCGATTCCGTCTTAACTCGGCCAGCAACTCGTACAAGCTGCCCGG
GAATGAACGCGAATTTAGCGTCTGGGTGGGCGACCTCAGCTCGGACGTGG
ACGACTATCAGCTGTACAAGGTGTTCTCCAGCAAGTTCACATCGATCAAA
ACCGCCAAGGTGATCTTGGACAGCCTGGGGTTTTCCAAGGGTTACGGCTT
TGTGCGATTTGGCATCGAGGATGAGCAGAAATCAGCGCTGTACGACATGA
ACGGGTACATCGGATTGGGTACCAAGCCCATAAAGATTTGCAATGCCGTG
CCCAAACCCAAATCCGAGTTGGGTGGTGCTGTGGGCGAAGGCAACACAAA
CTATGGATATGGAAGCGGTATGACTGCAGCAGGTGGCACCGACTACTCGC
AGTACTACGACCCCACCAGCACCTATTGGCAGGGATACCAGGCCTGGCAA
GGTTACTACAAGCAGGCCGGTGCTTCGATCACAGATGCGGCTGC
BS13287.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15440-PA | 1011 | CG15440-RA | 1..728 | 17..744 | 3590 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:26:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15440-RA | 1224 | CG15440-RA | 92..819 | 17..744 | 3610 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:26:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4453574..4454265 | 744..53 | 3430 | 99.7 | Minus |
2L | 23513712 | 2L | 4454327..4454362 | 52..17 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:26:21 has no hits.
BS13287.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:23 Download gff for
BS13287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-PA | 1..728 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:35 Download gff for
BS13287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-RA | 92..819 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:29 Download gff for
BS13287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-RA | 92..819 | 17..744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:29 Download gff for
BS13287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4453574..4454265 | 53..744 | 99 | <- | Minus |
2L | 4454327..4454362 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:35 Download gff for
BS13287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4453574..4454265 | 53..744 | 99 | <- | Minus |
arm_2L | 4454327..4454362 | 17..52 | 100 | | Minus |
BS13287.complete Sequence
1043 bp assembled on 2006-11-01
GenBank Submission: FJ637418
> BS13287.complete
GAAGTTATCAGTCGACATGGCGTCCGTGCATTGTCAACTGTGGATGGGAA
GCCTGGAGTCCTACATGACGGAGAACTTCATAATCGCCGCTTTCCGGAAG
ATGGGCGAAGATCCCACCACGGTGCGCCTGATGCGCAACAAGTACACGGG
CGAACCAGCCGGCTACTGCTTCGTCAACTTCATATCCGATGACCATGCGC
TGGACGCGATGCACAAGCTAAACGGTAAGCCCATTCCGGGCACCAATCCC
ATTGTGCGATTCCGTCTTAACTCGGCCAGCAACTCGTACAAGCTGCCCGG
GAATGAACGCGAATTTAGCGTCTGGGTGGGCGACCTCAGCTCGGACGTGG
ACGACTATCAGCTGTACAAGGTGTTCTCCAGCAAGTTCACATCGATCAAA
ACCGCCAAGGTGATCTTGGACAGCCTGGGGTTTTCCAAGGGTTACGGCTT
TGTGCGATTTGGCATCGAGGATGAGCAGAAATCAGCGCTGTACGACATGA
ACGGGTACATCGGATTGGGTACCAAGCCCATAAAGATTTGCAATGCCGTG
CCCAAACCCAAATCCGAGTTGGGTGGTGCTGTGGGCGAAGGCAACACAAA
CTATGGATATGGAAGCGGTATGACTGCAGCAGGTGGCACCGACTACTCGC
AGTACTACGACCCCACCAGCACCTATTGGCAGGGATACCAGGCCTGGCAA
GGTTACTACGAGCAGGCCGGTGCTTCGATCACAGATGCGGCTGCATACTA
CCAGCAGGCCATGTCGCAGTCGCACTCTAATCCGCAGACTCTGGCCCAGC
ACGCCGAGGCCTGGAGCGCACAACGCAGCGCCCAGTACGAGCAGCAGCAG
CAGCAGCAGACCGCTTCCGCCGCCAATGGAGCTGAGGATGAGAACGGACT
GGTGGAGCACAAGTTCGTCCTGGATGTGGACAAACTGAACCGAGAGGCCA
TTGATGCCGACCGCCGTCTGTACGATGCTCTGGAGAGCTCTAAGTGGCTG
CCCATTGAGCAGCTGGAAGTCTTTTAGAAGCTTTCTAGACCAT
BS13287.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15440-RA | 1011 | CG15440-PA | 1..1011 | 17..1027 | 5040 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15440-RA | 1224 | CG15440-RA | 92..1102 | 17..1027 | 5040 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4453291..4454265 | 1027..53 | 4860 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:30:49 has no hits.
BS13287.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:13 Download gff for
BS13287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-RA | 1..1011 | 17..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:22 Download gff for
BS13287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-RA | 96..1118 | 17..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:13 Download gff for
BS13287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-RA | 92..1102 | 17..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:13 Download gff for
BS13287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-RA | 96..1118 | 17..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:22 Download gff for
BS13287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-RA | 92..1102 | 17..1027 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:22 Download gff for
BS13287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4453291..4454265 | 53..1027 | 99 | <- | Minus |
2L | 4454327..4454362 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:13 Download gff for
BS13287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4453291..4454265 | 53..1027 | 99 | <- | Minus |
arm_2L | 4454327..4454362 | 17..52 | 100 | | Minus |
BS13287.pep Sequence
Translation from 16 to 1026
> BS13287.pep
MASVHCQLWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGY
CFVNFISDDHALDAMHKLNGKPIPGTNPIVRFRLNSASNSYKLPGNEREF
SVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDSLGFSKGYGFVRFGI
EDEQKSALYDMNGYIGLGTKPIKICNAVPKPKSELGGAVGEGNTNYGYGS
GMTAAGGTDYSQYYDPTSTYWQGYQAWQGYYEQAGASITDAAAYYQQAMS
QSHSNPQTLAQHAEAWSAQRSAQYEQQQQQQTASAANGAEDENGLVEHKF
VLDVDKLNREAIDADRRLYDALESSKWLPIEQLEVF*
BS13287.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15440-PA | 336 | CG15440-PA | 1..336 | 1..336 | 1779 | 100 | Plus |
Rbp9-PH | 439 | CG3151-PH | 117..309 | 13..207 | 153 | 28.4 | Plus |
Rbp9-PG | 439 | CG3151-PG | 117..309 | 13..207 | 153 | 28.4 | Plus |
Rbp9-PF | 439 | CG3151-PF | 117..309 | 13..207 | 153 | 28.4 | Plus |
Rbp9-PE | 439 | CG3151-PE | 117..309 | 13..207 | 153 | 28.4 | Plus |