Clone BS13287 Report

Search the DGRC for BS13287

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG15440-RA
Protein status:BS13287.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13287.3prime Sequence

771 bp (757 high quality bases) assembled on 2006-10-13

> BS13287.3prime
ATGGTCTAGAAAGCTTCTAAAAGACTTCCAGCTGCTCAATGGGCAGCCAC
TTAGAGCTCTCCAGAGCATCGTACAGACGGCGGTCGGCATCAATGGCCTC
TCGGTTCAGTTTGTCCACATCCAGGACGAACTTGTGCTCCACCAGTCCGT
TCTCATCCTCAGCTCCATTGGCGGCGGAAGCGGTCTGCTGCTGCTGCTGC
TGCTCGTACTGGGCGCTGCGTTGTGCGCTCCAGGCCTCGGCGTGCTGGGC
CAGAGTCTGCGGATTAGAGTGCGACTGCGACATGGCCTGCTGGTAGTATG
CAGCCGCATCTGTGATCGAAGCACCGGCCTGCTCGTAGTAACCTTGCCAG
GCCTGGTATCCCTGCCAATAGGTGCTGGTGGGGTCGTAGTACTGCGAGTA
GTCGGTGCCACCTGCTGCAGTCATACCGCTTCCATATCCATAGTTTGTGT
TGCCTTCGCCCACAGCACCACCCAACTCGGATTTGGGTTTGGGCACGGCA
TTGCAAATCTTTATGGGCTTGGTACCCAATCCGATGTACCCGTTCATGTC
GTACAGCGCTGATTTCTGCTCATCCTCGATGCCAAATCGCACAAAGCCGT
AACCCTTGGAAAACCCCAGGCTGTCCAAGATCACCTTGGCGGTTTTGATC
GATGTGAACTTGCTGGAGAACACCTTGTACAGCTGATAGTCGTCCACGTC
CGAGCTGAGGTCGCCCACCCAGACGCTAAATTCGCGTTCATTCCCGGGCA
GCTTGTACGAGTTGCTGGCCG

BS13287.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG15440-PA 1011 CG15440-RA 257..1011 771..17 3775 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG15440-RA 1224 CG15440-RA 348..1102 771..17 3775 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4453291..4454045 17..771 3775 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:32:22 has no hits.

BS13287.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:23 Download gff for BS13287.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15440-PA 257..1011 17..771 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:33 Download gff for BS13287.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 348..1114 7..771 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:43 Download gff for BS13287.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 348..1114 7..771 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:43 Download gff for BS13287.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4453279..4454045 7..771 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:33 Download gff for BS13287.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4453279..4454045 7..771 99   Plus

BS13287.5prime Sequence

744 bp (707 high quality bases) assembled on 2006-10-13

> BS13287.5prime
GAAGTTATCAGTCGACATGGCGTCCGTGCATTGTCAACTGTGGATGGGAA
GCCTGGAGTCCTACATGACGGAGAACTTCATAATCGCCGCTTTCCGGAAG
ATGGGCGAAGATCCCACCACGGTGCGCCTGATGCGCAACAAGTACACGGG
CGAACCAGCCGGCTACTGCTTCGTCAACTTCATATCCGATGACCATGCGC
TGGACGCGATGCACAAGCTAAACGGTAAGCCCATTCCGGGCACCAATCCC
ATTGTGCGATTCCGTCTTAACTCGGCCAGCAACTCGTACAAGCTGCCCGG
GAATGAACGCGAATTTAGCGTCTGGGTGGGCGACCTCAGCTCGGACGTGG
ACGACTATCAGCTGTACAAGGTGTTCTCCAGCAAGTTCACATCGATCAAA
ACCGCCAAGGTGATCTTGGACAGCCTGGGGTTTTCCAAGGGTTACGGCTT
TGTGCGATTTGGCATCGAGGATGAGCAGAAATCAGCGCTGTACGACATGA
ACGGGTACATCGGATTGGGTACCAAGCCCATAAAGATTTGCAATGCCGTG
CCCAAACCCAAATCCGAGTTGGGTGGTGCTGTGGGCGAAGGCAACACAAA
CTATGGATATGGAAGCGGTATGACTGCAGCAGGTGGCACCGACTACTCGC
AGTACTACGACCCCACCAGCACCTATTGGCAGGGATACCAGGCCTGGCAA
GGTTACTACAAGCAGGCCGGTGCTTCGATCACAGATGCGGCTGC

BS13287.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15440-PA 1011 CG15440-RA 1..728 17..744 3590 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG15440-RA 1224 CG15440-RA 92..819 17..744 3610 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4453574..4454265 744..53 3430 99.7 Minus
2L 23513712 2L 4454327..4454362 52..17 180 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:26:21 has no hits.

BS13287.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:23 Download gff for BS13287.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15440-PA 1..728 17..744 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:35 Download gff for BS13287.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 92..819 17..744 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:29 Download gff for BS13287.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 92..819 17..744 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:29 Download gff for BS13287.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4453574..4454265 53..744 99 <- Minus
2L 4454327..4454362 17..52 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:35 Download gff for BS13287.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4453574..4454265 53..744 99 <- Minus
arm_2L 4454327..4454362 17..52 100   Minus

BS13287.complete Sequence

1043 bp assembled on 2006-11-01

GenBank Submission: FJ637418

> BS13287.complete
GAAGTTATCAGTCGACATGGCGTCCGTGCATTGTCAACTGTGGATGGGAA
GCCTGGAGTCCTACATGACGGAGAACTTCATAATCGCCGCTTTCCGGAAG
ATGGGCGAAGATCCCACCACGGTGCGCCTGATGCGCAACAAGTACACGGG
CGAACCAGCCGGCTACTGCTTCGTCAACTTCATATCCGATGACCATGCGC
TGGACGCGATGCACAAGCTAAACGGTAAGCCCATTCCGGGCACCAATCCC
ATTGTGCGATTCCGTCTTAACTCGGCCAGCAACTCGTACAAGCTGCCCGG
GAATGAACGCGAATTTAGCGTCTGGGTGGGCGACCTCAGCTCGGACGTGG
ACGACTATCAGCTGTACAAGGTGTTCTCCAGCAAGTTCACATCGATCAAA
ACCGCCAAGGTGATCTTGGACAGCCTGGGGTTTTCCAAGGGTTACGGCTT
TGTGCGATTTGGCATCGAGGATGAGCAGAAATCAGCGCTGTACGACATGA
ACGGGTACATCGGATTGGGTACCAAGCCCATAAAGATTTGCAATGCCGTG
CCCAAACCCAAATCCGAGTTGGGTGGTGCTGTGGGCGAAGGCAACACAAA
CTATGGATATGGAAGCGGTATGACTGCAGCAGGTGGCACCGACTACTCGC
AGTACTACGACCCCACCAGCACCTATTGGCAGGGATACCAGGCCTGGCAA
GGTTACTACGAGCAGGCCGGTGCTTCGATCACAGATGCGGCTGCATACTA
CCAGCAGGCCATGTCGCAGTCGCACTCTAATCCGCAGACTCTGGCCCAGC
ACGCCGAGGCCTGGAGCGCACAACGCAGCGCCCAGTACGAGCAGCAGCAG
CAGCAGCAGACCGCTTCCGCCGCCAATGGAGCTGAGGATGAGAACGGACT
GGTGGAGCACAAGTTCGTCCTGGATGTGGACAAACTGAACCGAGAGGCCA
TTGATGCCGACCGCCGTCTGTACGATGCTCTGGAGAGCTCTAAGTGGCTG
CCCATTGAGCAGCTGGAAGTCTTTTAGAAGCTTTCTAGACCAT

BS13287.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG15440-RA 1011 CG15440-PA 1..1011 17..1027 5040 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG15440-RA 1224 CG15440-RA 92..1102 17..1027 5040 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4453291..4454265 1027..53 4860 99.9 Minus
Blast to na_te.dros performed on 2014-11-27 14:30:49 has no hits.

BS13287.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:13 Download gff for BS13287.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 1..1011 17..1027 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:22 Download gff for BS13287.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 96..1118 17..1037 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:13 Download gff for BS13287.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 92..1102 17..1027 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:13 Download gff for BS13287.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 96..1118 17..1037 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:22 Download gff for BS13287.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 92..1102 17..1027 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:22 Download gff for BS13287.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4453291..4454265 53..1027 99 <- Minus
2L 4454327..4454362 17..52 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:13 Download gff for BS13287.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4453291..4454265 53..1027 99 <- Minus
arm_2L 4454327..4454362 17..52 100   Minus

BS13287.pep Sequence

Translation from 16 to 1026

> BS13287.pep
MASVHCQLWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGY
CFVNFISDDHALDAMHKLNGKPIPGTNPIVRFRLNSASNSYKLPGNEREF
SVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDSLGFSKGYGFVRFGI
EDEQKSALYDMNGYIGLGTKPIKICNAVPKPKSELGGAVGEGNTNYGYGS
GMTAAGGTDYSQYYDPTSTYWQGYQAWQGYYEQAGASITDAAAYYQQAMS
QSHSNPQTLAQHAEAWSAQRSAQYEQQQQQQTASAANGAEDENGLVEHKF
VLDVDKLNREAIDADRRLYDALESSKWLPIEQLEVF*

BS13287.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG15440-PA 336 CG15440-PA 1..336 1..336 1779 100 Plus
Rbp9-PH 439 CG3151-PH 117..309 13..207 153 28.4 Plus
Rbp9-PG 439 CG3151-PG 117..309 13..207 153 28.4 Plus
Rbp9-PF 439 CG3151-PF 117..309 13..207 153 28.4 Plus
Rbp9-PE 439 CG3151-PE 117..309 13..207 153 28.4 Plus