Clone Sequence Records
BS13291.complete Sequence
1118 bp assembled on 2010-02-09
GenBank Submission: KX800392
> BS13291.complete
GAAGTTATCAGTCGACATGCTAAACAAGAAGCTGAACGAGAACGACGTTC
GCAAGCTATTTGAAGTCCACGGAGCCATCGAGGAGTGCACCGTCCTTCGG
GACCAAAACGGACAGAGCAAGGGTTGTGCCTTCGTCACATTCGCCACCAA
GCACGCTGCCATTTCGGCCATTAAAGTGACCCTGAGCCAGAACAAGATCA
TGGAGGGCTGCACATCGCCGCTGGTCGTCAAGTTCGCCGATACGCAAAAA
GAGAAGGAGCAGAAGAAGATTCAGCAAATTCAGGCCAATCTCTGGAACCT
GGCCAGCAACATCAACATACCTCTGGGCCAAACGGCCACCAGCGTGACCA
CGCCCATCCTGCCCAATCCGCCGCAGCAGCCTTCGCCGGTTCTCGGCGCA
GATGCCATTACCCCGGCCTCCATTCAACTGCTGCAGCAGCTGCAGGCGGT
GGGACTGCAGCACCAGTTGTTGCAAGCCCTCACAGGACTGGGAGCCCAGC
AGAGCAGCTCGGCGACGGACACCAGCGCTGTGGCGGCCGCAGGACTTTTG
ACCCCGATGACCGTCCAGAATCTAGCGGCCATTGCGGCCATGACGCAGCC
GAGTCTCTCGAATGCCGCCGCGGCAGCCGCCGCTGCCACATCGCCTGGAA
GCGCCCAACTGACCAACACGGCTGCGCTGCTCTGGTCCGATCCGAATCCA
ATGGCATCGGCATATATGTCAACAGCCGCCGGTCTGCCGCAATTCGGGAG
CGCCAGTGCATTGTCCACTTCGCCGCTGGCCAGCGTTGCCCTCAGCGCCG
CAGCCGCCGCCGCAGCGGGAAAGCAGATTGAAGGACCCGAGGGCTGCAAC
CTTTTCATCTACCATCTGCCGCAGGAGTTCACCGATACGGATCTGGCCTC
CACGTTCCTGCCCTTCGGCAATGTGATCTCGGCCAAGGTGTTCATCGACA
AACAGACGAGCCTGTCGAAGTGCTTCGGGTTTGTCTCCTTCGACAATCCG
GACTCGGCCCAGGTGGCCATAAAGGCGATGAACGGCTTCCAGGTGGGCAC
CAAGCGTCTCAAGGTGCAGCTGAAGAAGCCCAAGGACTCGAAGCCCTACT
AGAAGCTTTCTAGACCAT
BS13291.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:19:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aret-RK | 1722 | CG31762-PK | 637..1722 | 17..1102 | 5430 | 100 | Plus |
| aret-RJ | 1722 | CG31762-PJ | 637..1722 | 17..1102 | 5430 | 100 | Plus |
| aret-RI | 1722 | CG31762-PI | 637..1722 | 17..1102 | 5430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:19:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aret-RK | 3510 | CG31762-RK | 1064..2150 | 17..1103 | 5435 | 100 | Plus |
| aret-RJ | 2431 | CG31762-RJ | 1093..2179 | 17..1103 | 5435 | 100 | Plus |
| aret-RI | 3019 | CG31762-RI | 788..1874 | 17..1103 | 5435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:19:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12298813..12299111 | 178..476 | 1495 | 100 | Plus |
| 2L | 23513712 | 2L | 12310680..12310951 | 832..1103 | 1360 | 100 | Plus |
| 2L | 23513712 | 2L | 12299186..12299395 | 475..684 | 1050 | 100 | Plus |
| 2L | 23513712 | 2L | 12298588..12298749 | 17..178 | 810 | 100 | Plus |
| 2L | 23513712 | 2L | 12304446..12304596 | 684..834 | 755 | 100 | Plus |
| 2L | 23513712 | 2L | 12396291..12396524 | 832..1065 | 450 | 79.5 | Plus |
| 2L | 23513712 | 2L | 12385632..12385718 | 67..153 | 240 | 85.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:19:06 has no hits.
BS13291.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:41 Download gff for
BS13291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 724..1815 | 11..1102 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:34:16 Download gff for
BS13291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 1059..2144 | 17..1102 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:43 Download gff for
BS13291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RI | 788..1873 | 17..1102 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:59 Download gff for
BS13291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 1059..2144 | 17..1102 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:08:26 Download gff for
BS13291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RI | 788..1873 | 17..1102 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:08:26 Download gff for
BS13291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12298588..12298749 | 17..178 | 100 | -> | Plus |
| 2L | 12298814..12299111 | 179..476 | 100 | -> | Plus |
| 2L | 12299188..12299394 | 477..683 | 100 | -> | Plus |
| 2L | 12304446..12304595 | 684..833 | 100 | -> | Plus |
| 2L | 12310682..12310950 | 834..1102 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:43 Download gff for
BS13291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12298588..12298749 | 17..178 | 100 | -> | Plus |
| arm_2L | 12298814..12299111 | 179..476 | 100 | -> | Plus |
| arm_2L | 12299188..12299394 | 477..683 | 100 | -> | Plus |
| arm_2L | 12304446..12304595 | 684..833 | 100 | -> | Plus |
| arm_2L | 12310682..12310950 | 834..1102 | 100 | | Plus |
BS13291.3prime Sequence
752 bp (684 high quality bases) assembled on 2006-10-13
> BS13291.3prime
ATGGTCTAGAAAGCTTCTAGTAGGGCTTCGAGTCCTTGGGCTTCTTCAGC
TGCACCTTGAGACGCTTGGTGCCCACCTGGAAGCCGTTCATCGCCTTTAT
GGCCACCTGGGCCGAGTCCGGATTGTCGAAGGAGACAAACCCGAAGCACT
TCGACAGGCTCGTCTGTTTGTCGATGAACACCTTGGCCGAGATCACATTG
CCGAAGGGCAGGAACGTGGAGGCCAGATCCGTATCGGTGAACTCCTGCGG
CAGATGGTAGATGAAAAGGTTGCAGCCCTCGGGTCCTTCAATCTGCTTTC
CCGCTGCGGCGGCGGCTGCGGCGCTGAGGGCAACGCTGGCCAGCGGCGAA
GTGGACAATGCACTGGCGCTCCCGAATTGCGGCAGACCGGCGGCTGTTGA
CATATATGCCGATGCCATTGGATTCGGATCGGACCAGAGCAGCGCAGCCG
TGTTGGTCAGTTGGGCGCTTCCAGGCGATGTGGCAGCGGCGGCTGCCGCG
GCGGCATTCGAGAGACTCGGCTGCGTCATGGCCGCAATGGCCGCTAGATT
CTGGACGGTCATCGGGGTCAAAAGTCCTGCGGCCGCCACAGCGCTGGTGT
CCGTCGCCGAGCTGCTCTGCTGGGCTCCCAGTCCTGTGAGGGCTTGCAAC
AACTGGTGCTGCAGTCCCACCGCCTGCAGCTGCTGCAGCAGTTGAATGGA
GGCCGGGGTAATGGCATCTGCGCCGAGAACCGGCGAAGGCTGCTGCGGCG
GA
BS13291.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:51:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31762-PB | 2433 | aret-RB | 1698..2433 | 752..17 | 3680 | 100 | Minus |
| CG31762-PA | 1815 | aret-RA | 1080..1815 | 752..17 | 3680 | 100 | Minus |
| CG31762-PD | 1086 | aret-RD | 351..1086 | 752..17 | 3680 | 100 | Minus |
| CG31762-PC | 1851 | aret-RC | 1433..1851 | 435..17 | 2095 | 100 | Minus |
| CG31762-PC | 1851 | aret-RC | 1080..1397 | 752..435 | 1590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:57:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aret-RK | 3510 | CG31762-RK | 1414..2150 | 752..16 | 3685 | 100 | Minus |
| aret-RJ | 2431 | CG31762-RJ | 1443..2179 | 752..16 | 3685 | 100 | Minus |
| aret-RI | 3019 | CG31762-RI | 1138..1874 | 752..16 | 3685 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12310680..12310951 | 287..16 | 1360 | 100 | Minus |
| 2L | 23513712 | 2L | 12299186..12299395 | 644..435 | 1050 | 100 | Minus |
| 2L | 23513712 | 2L | 12304446..12304596 | 435..285 | 755 | 100 | Minus |
| 2L | 23513712 | 2L | 12299002..12299111 | 752..643 | 550 | 100 | Minus |
| 2L | 23513712 | 2L | 12396291..12396524 | 287..54 | 450 | 79.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:57:35 has no hits.
BS13291.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:26 Download gff for
BS13291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31762-PD | 352..1086 | 17..751 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:24 Download gff for
BS13291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RI | 1139..1877 | 13..751 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:30 Download gff for
BS13291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RI | 1139..1877 | 13..751 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:30 Download gff for
BS13291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12299188..12299394 | 436..642 | 100 | -> | Minus |
| 2L | 12304446..12304595 | 286..435 | 100 | -> | Minus |
| 2L | 12310682..12310954 | 13..285 | 99 | | Minus |
| 2L | 12299003..12299111 | 643..751 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:24 Download gff for
BS13291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12299003..12299111 | 643..751 | 100 | -> | Minus |
| arm_2L | 12310682..12310954 | 13..285 | 99 | | Minus |
| arm_2L | 12299188..12299394 | 436..642 | 100 | -> | Minus |
| arm_2L | 12304446..12304595 | 286..435 | 100 | -> | Minus |
BS13291.5prime Sequence
773 bp (694 high quality bases) assembled on 2006-10-13
> BS13291.5prime
GAAGTTATCAGTCGACATGCTAAACAAGAAGCTGAACGAGAACGACGTTC
GCAAGCTATTTGAAGTCCACGGAGCCATCGAGGAGTGCACCGTCCTTCGG
GACCAAAACGGACAGAGCAAGGGTTGTGCCTTCGTCACATTCGCCACCAA
GCACGCTGCCATTTCGGCCATTAAAGTGACCCTGAGCCAGAACAAGATCA
TGGAGGGCTGCACATCGCCGCTGGTCGTCAAGTTCGCCGATACGCAAAAA
GAGAAGGAGCAGAAGAAGATTCAGCAAATTCAGGCCAATCTCTGGAACCT
GGCCAGCAACATCAACATACCTCTGGGCCAAACGGCCACCAGCGTGACCA
CGCCCATCCTGCCCAATCCGCCGCAGCAGCCTTCGCCGGTTCTCGGCGCA
GATGCCATTACCCCGGCCTCCATTCAACTGCTGCAGCAGCTGCAGGCGGT
GGGACTGCAGCACCAGTTGTTGCAAGCCCTCACAGGACTGGGAGCCCAGC
AGAGCAGCTCGGCGACGGACACCAGCGCTGTGGCGGCCGCAGGACTTTTG
ACCCCGATGACCGTCCAGAATCTAGCGGCCATTGCGGCCATGACGCAGCC
GAGTCTCTCGAATGCCGCCGCGGCAGCCGCCGCTGCCACATCGCCTGGAA
GCGCCCAACTGACCAACACGGCTGCGCTGCTCTGGTCCGATCCGAATCCA
ATGGCATCGGCATATATGTCAACAGCCGCCGGTCTGCCGCAATTCGGGAG
CGCCAGTGCATTGTCCACTTCGC
BS13291.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31762-PB | 2433 | aret-RB | 1348..2104 | 17..773 | 3785 | 100 | Plus |
| CG31762-PA | 1815 | aret-RA | 730..1486 | 17..773 | 3785 | 100 | Plus |
| CG31762-PD | 1086 | aret-RD | 1..757 | 17..773 | 3785 | 100 | Plus |
| CG31762-PC | 1851 | aret-RC | 730..1397 | 17..684 | 3340 | 100 | Plus |
| CG31762-PC | 1851 | aret-RC | 1433..1522 | 684..773 | 450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aret-RK | 3510 | CG31762-RK | 1064..1820 | 17..773 | 3785 | 100 | Plus |
| aret-RJ | 2431 | CG31762-RJ | 1093..1849 | 17..773 | 3785 | 100 | Plus |
| aret-RI | 3019 | CG31762-RI | 788..1544 | 17..773 | 3785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12298813..12299111 | 178..476 | 1495 | 100 | Plus |
| 2L | 23513712 | 2L | 12299186..12299395 | 475..684 | 1050 | 100 | Plus |
| 2L | 23513712 | 2L | 12298588..12298749 | 17..178 | 810 | 100 | Plus |
| 2L | 23513712 | 2L | 12304446..12304535 | 684..773 | 450 | 100 | Plus |
| 2L | 23513712 | 2L | 12385632..12385718 | 67..153 | 240 | 85.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:59:46 has no hits.
BS13291.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:26 Download gff for
BS13291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31762-PD | 1..757 | 17..773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:46:25 Download gff for
BS13291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RI | 782..1544 | 11..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:20 Download gff for
BS13291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RI | 782..1544 | 11..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:20 Download gff for
BS13291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12299188..12299394 | 477..683 | 100 | -> | Plus |
| 2L | 12304446..12304535 | 684..773 | 100 | | Plus |
| 2L | 12298582..12298749 | 11..178 | 98 | -> | Plus |
| 2L | 12298814..12299111 | 179..476 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:46:25 Download gff for
BS13291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12298814..12299111 | 179..476 | 100 | -> | Plus |
| arm_2L | 12298582..12298749 | 11..178 | 98 | -> | Plus |
| arm_2L | 12299188..12299394 | 477..683 | 100 | -> | Plus |
| arm_2L | 12304446..12304535 | 684..773 | 100 | | Plus |
BS13291.pep Sequence
Translation from 16 to 1101
> BS13291.pep
MLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAIS
AIKVTLSQNKIMEGCTSPLVVKFADTQKEKEQKKIQQIQANLWNLASNIN
IPLGQTATSVTTPILPNPPQQPSPVLGADAITPASIQLLQQLQAVGLQHQ
LLQALTGLGAQQSSSATDTSAVAAAGLLTPMTVQNLAAIAAMTQPSLSNA
AAAAAAATSPGSAQLTNTAALLWSDPNPMASAYMSTAAGLPQFGSASALS
TSPLASVALSAAAAAAAGKQIEGPEGCNLFIYHLPQEFTDTDLASTFLPF
GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV
QLKKPKDSKPY*
BS13291.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aret-PD | 361 | CG31762-PD | 1..361 | 1..361 | 1802 | 100 | Plus |
| aret-PK | 573 | CG31762-PK | 213..573 | 1..361 | 1802 | 100 | Plus |
| aret-PJ | 573 | CG31762-PJ | 213..573 | 1..361 | 1802 | 100 | Plus |
| aret-PI | 573 | CG31762-PI | 213..573 | 1..361 | 1802 | 100 | Plus |
| aret-PH | 573 | CG31762-PH | 213..573 | 1..361 | 1802 | 100 | Plus |
